Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:A12:A11
Extra
PDB:
ATOM 1 O3' U A 11 -9.471 -31.361 5.678 1.00 23.94 O
ATOM 2 P G A 12 -9.221 -29.998 6.470 1.00 23.55 P
ATOM 3 OP1 G A 12 -10.364 -29.699 7.368 1.00 24.05 O
ATOM 4 OP2 G A 12 -8.812 -29.007 5.450 1.00 23.24 O
ATOM 5 O5' G A 12 -7.965 -30.354 7.366 1.00 22.71 O
ATOM 6 C5' G A 12 -6.729 -29.725 7.107 1.00 22.42 C
ATOM 7 C4' G A 12 -5.630 -30.738 6.959 1.00 21.97 C
ATOM 8 O4' G A 12 -6.047 -31.918 6.233 1.00 21.98 O
ATOM 9 C3' G A 12 -4.529 -30.152 6.121 1.00 21.66 C
ATOM 10 O3' G A 12 -3.750 -29.328 6.936 1.00 21.25 O
ATOM 11 C2' G A 12 -3.838 -31.372 5.548 1.00 20.80 C
ATOM 12 O2' G A 12 -2.972 -31.940 6.502 1.00 20.71 O
ATOM 13 C1' G A 12 -5.025 -32.307 5.324 1.00 21.52 C
ATOM 14 N9 G A 12 -5.579 -32.248 3.973 1.00 22.07 N
ATOM 15 C8 G A 12 -6.864 -31.893 3.636 1.00 23.64 C
ATOM 16 N7 G A 12 -7.091 -31.928 2.352 1.00 24.25 N
ATOM 17 C5 G A 12 -5.883 -32.328 1.802 1.00 24.00 C
ATOM 18 C6 G A 12 -5.525 -32.538 0.450 1.00 24.51 C
ATOM 19 O6 G A 12 -6.230 -32.404 -0.563 1.00 25.49 O
ATOM 20 N1 G A 12 -4.202 -32.944 0.330 1.00 22.87 N
ATOM 21 C2 G A 12 -3.337 -33.121 1.374 1.00 23.52 C
ATOM 22 N2 G A 12 -2.103 -33.524 1.050 1.00 23.07 N
ATOM 23 N3 G A 12 -3.655 -32.923 2.644 1.00 24.10 N
ATOM 24 C4 G A 12 -4.938 -32.532 2.785 1.00 23.29 C
ATOM 25 P C A 13 -3.502 -27.827 6.479 1.00 22.40 P
ATOM 26 OP1 C A 13 -2.942 -27.080 7.634 1.00 22.41 O
ATOM 27 OP2 C A 13 -4.751 -27.345 5.824 1.00 20.68 O
ATOM 28 O5' C A 13 -2.374 -28.005 5.366 1.00 22.62 O
TER
ATOM 1 O3' G B 10 -9.736 -35.879 10.182 1.00 21.76 O
ATOM 2 P U B 11 -9.769 -34.278 10.263 1.00 21.62 P
ATOM 3 OP1 U B 11 -8.382 -33.830 10.561 1.00 22.17 O
ATOM 4 OP2 U B 11 -10.886 -33.869 11.155 1.00 19.60 O
ATOM 5 O5' U B 11 -10.095 -33.823 8.773 1.00 22.39 O
ATOM 6 C5' U B 11 -9.074 -33.862 7.753 1.00 23.24 C
ATOM 7 C4' U B 11 -9.689 -33.649 6.394 1.00 23.48 C
ATOM 8 O4' U B 11 -10.736 -34.627 6.194 1.00 23.34 O
ATOM 9 C3' U B 11 -10.387 -32.314 6.184 1.00 24.23 C
ATOM 10 O3' U B 11 -9.471 -31.361 5.678 1.00 23.94 O
ATOM 11 C2' U B 11 -11.392 -32.615 5.084 1.00 24.64 C
ATOM 12 O2' U B 11 -10.775 -32.487 3.817 1.00 26.79 O
ATOM 13 C1' U B 11 -11.719 -34.088 5.335 1.00 24.15 C
ATOM 14 N1 U B 11 -13.061 -34.397 5.856 1.00 24.03 N
ATOM 15 C2 U B 11 -13.924 -35.057 5.007 1.00 25.40 C
ATOM 16 O2 U B 11 -13.611 -35.384 3.880 1.00 27.01 O
ATOM 17 N3 U B 11 -15.167 -35.326 5.522 1.00 25.42 N
ATOM 18 C4 U B 11 -15.623 -35.016 6.780 1.00 26.43 C
ATOM 19 O4 U B 11 -16.775 -35.330 7.108 1.00 26.91 O
ATOM 20 C5 U B 11 -14.668 -34.339 7.603 1.00 26.12 C
ATOM 21 C6 U B 11 -13.452 -34.056 7.123 1.00 24.81 C
ATOM 22 P G B 12 -9.221 -29.998 6.470 1.00 23.55 P
ATOM 23 OP1 G B 12 -10.364 -29.699 7.368 1.00 24.05 O
ATOM 24 OP2 G B 12 -8.812 -29.007 5.450 1.00 23.24 O
ATOM 25 O5' G B 12 -7.965 -30.354 7.366 1.00 22.71 O
TER
ATOM 2 P G A 12 -9.221 -29.998 6.470 1.00 23.55 P
ATOM 3 OP1 G A 12 -10.364 -29.699 7.368 1.00 24.05 O
ATOM 4 OP2 G A 12 -8.812 -29.007 5.450 1.00 23.24 O
ATOM 5 O5' G A 12 -7.965 -30.354 7.366 1.00 22.71 O
ATOM 6 C5' G A 12 -6.729 -29.725 7.107 1.00 22.42 C
ATOM 7 C4' G A 12 -5.630 -30.738 6.959 1.00 21.97 C
ATOM 8 O4' G A 12 -6.047 -31.918 6.233 1.00 21.98 O
ATOM 9 C3' G A 12 -4.529 -30.152 6.121 1.00 21.66 C
ATOM 10 O3' G A 12 -3.750 -29.328 6.936 1.00 21.25 O
ATOM 11 C2' G A 12 -3.838 -31.372 5.548 1.00 20.80 C
ATOM 12 O2' G A 12 -2.972 -31.940 6.502 1.00 20.71 O
ATOM 13 C1' G A 12 -5.025 -32.307 5.324 1.00 21.52 C
ATOM 14 N9 G A 12 -5.579 -32.248 3.973 1.00 22.07 N
ATOM 15 C8 G A 12 -6.864 -31.893 3.636 1.00 23.64 C
ATOM 16 N7 G A 12 -7.091 -31.928 2.352 1.00 24.25 N
ATOM 17 C5 G A 12 -5.883 -32.328 1.802 1.00 24.00 C
ATOM 18 C6 G A 12 -5.525 -32.538 0.450 1.00 24.51 C
ATOM 19 O6 G A 12 -6.230 -32.404 -0.563 1.00 25.49 O
ATOM 20 N1 G A 12 -4.202 -32.944 0.330 1.00 22.87 N
ATOM 21 C2 G A 12 -3.337 -33.121 1.374 1.00 23.52 C
ATOM 22 N2 G A 12 -2.103 -33.524 1.050 1.00 23.07 N
ATOM 23 N3 G A 12 -3.655 -32.923 2.644 1.00 24.10 N
ATOM 24 C4 G A 12 -4.938 -32.532 2.785 1.00 23.29 C
ATOM 25 P C A 13 -3.502 -27.827 6.479 1.00 22.40 P
ATOM 26 OP1 C A 13 -2.942 -27.080 7.634 1.00 22.41 O
ATOM 27 OP2 C A 13 -4.751 -27.345 5.824 1.00 20.68 O
ATOM 28 O5' C A 13 -2.374 -28.005 5.366 1.00 22.62 O
TER
ATOM 1 O3' G B 10 -9.736 -35.879 10.182 1.00 21.76 O
ATOM 2 P U B 11 -9.769 -34.278 10.263 1.00 21.62 P
ATOM 3 OP1 U B 11 -8.382 -33.830 10.561 1.00 22.17 O
ATOM 4 OP2 U B 11 -10.886 -33.869 11.155 1.00 19.60 O
ATOM 5 O5' U B 11 -10.095 -33.823 8.773 1.00 22.39 O
ATOM 6 C5' U B 11 -9.074 -33.862 7.753 1.00 23.24 C
ATOM 7 C4' U B 11 -9.689 -33.649 6.394 1.00 23.48 C
ATOM 8 O4' U B 11 -10.736 -34.627 6.194 1.00 23.34 O
ATOM 9 C3' U B 11 -10.387 -32.314 6.184 1.00 24.23 C
ATOM 10 O3' U B 11 -9.471 -31.361 5.678 1.00 23.94 O
ATOM 11 C2' U B 11 -11.392 -32.615 5.084 1.00 24.64 C
ATOM 12 O2' U B 11 -10.775 -32.487 3.817 1.00 26.79 O
ATOM 13 C1' U B 11 -11.719 -34.088 5.335 1.00 24.15 C
ATOM 14 N1 U B 11 -13.061 -34.397 5.856 1.00 24.03 N
ATOM 15 C2 U B 11 -13.924 -35.057 5.007 1.00 25.40 C
ATOM 16 O2 U B 11 -13.611 -35.384 3.880 1.00 27.01 O
ATOM 17 N3 U B 11 -15.167 -35.326 5.522 1.00 25.42 N
ATOM 18 C4 U B 11 -15.623 -35.016 6.780 1.00 26.43 C
ATOM 19 O4 U B 11 -16.775 -35.330 7.108 1.00 26.91 O
ATOM 20 C5 U B 11 -14.668 -34.339 7.603 1.00 26.12 C
ATOM 21 C6 U B 11 -13.452 -34.056 7.123 1.00 24.81 C
ATOM 22 P G B 12 -9.221 -29.998 6.470 1.00 23.55 P
ATOM 23 OP1 G B 12 -10.364 -29.699 7.368 1.00 24.05 O
ATOM 24 OP2 G B 12 -8.812 -29.007 5.450 1.00 23.24 O
ATOM 25 O5' G B 12 -7.965 -30.354 7.366 1.00 22.71 O
TER
Atoms:
OP1: (-10.364,-29.699,7.368)
OP2: (-8.812,-29.007,5.450)
C3': (-4.529,-30.152,6.121)
C1': (-5.025,-32.307,5.324)
C5': (-6.729,-29.725,7.107)
O6: (-6.230,-32.404,-0.563)
O4': (-6.047,-31.918,6.233)
C8: (-6.864,-31.893,3.636)
C2: (-3.337,-33.121,1.374)
C6: (-5.525,-32.538,0.450)
C5: (-5.883,-32.328,1.802)
C4: (-4.938,-32.532,2.785)
P: (-9.221,-29.998,6.470)
C4': (-5.630,-30.738,6.959)
C2': (-3.838,-31.372,5.548)
O2': (-2.972,-31.940,6.502)
N1: (-4.202,-32.944,0.330)
N2: (-2.103,-33.524,1.050)
N3: (-3.655,-32.923,2.644)
N7: (-7.091,-31.928,2.352)
N9: (-5.579,-32.248,3.973)
O5': (-7.965,-30.354,7.366)
O3': (-3.750,-29.328,6.936)
OP2: (-8.812,-29.007,5.450)
C3': (-4.529,-30.152,6.121)
C1': (-5.025,-32.307,5.324)
C5': (-6.729,-29.725,7.107)
O6: (-6.230,-32.404,-0.563)
O4': (-6.047,-31.918,6.233)
C8: (-6.864,-31.893,3.636)
C2: (-3.337,-33.121,1.374)
C6: (-5.525,-32.538,0.450)
C5: (-5.883,-32.328,1.802)
C4: (-4.938,-32.532,2.785)
P: (-9.221,-29.998,6.470)
C4': (-5.630,-30.738,6.959)
C2': (-3.838,-31.372,5.548)
O2': (-2.972,-31.940,6.502)
N1: (-4.202,-32.944,0.330)
N2: (-2.103,-33.524,1.050)
N3: (-3.655,-32.923,2.644)
N7: (-7.091,-31.928,2.352)
N9: (-5.579,-32.248,3.973)
O5': (-7.965,-30.354,7.366)
O3': (-3.750,-29.328,6.936)
C4: (-15.623,-35.016,6.780)
N3: (-15.167,-35.326,5.522)
OP1: (-8.382,-33.830,10.561)
OP2: (-10.886,-33.869,11.155)
C2: (-13.924,-35.057,5.007)
C1': (-11.719,-34.088,5.335)
C3': (-10.387,-32.314,6.184)
O5': (-10.095,-33.823,8.773)
O4': (-10.736,-34.627,6.194)
C5': (-9.074,-33.862,7.753)
P: (-9.769,-34.278,10.263)
C4': (-9.689,-33.649,6.394)
C2': (-11.392,-32.615,5.084)
O2': (-10.775,-32.487,3.817)
N1: (-13.061,-34.397,5.856)
O4: (-16.775,-35.330,7.108)
O2: (-13.611,-35.384,3.880)
C6: (-13.452,-34.056,7.123)
C5: (-14.668,-34.339,7.603)
O3': (-9.471,-31.361,5.678)
N3: (-15.167,-35.326,5.522)
OP1: (-8.382,-33.830,10.561)
OP2: (-10.886,-33.869,11.155)
C2: (-13.924,-35.057,5.007)
C1': (-11.719,-34.088,5.335)
C3': (-10.387,-32.314,6.184)
O5': (-10.095,-33.823,8.773)
O4': (-10.736,-34.627,6.194)
C5': (-9.074,-33.862,7.753)
P: (-9.769,-34.278,10.263)
C4': (-9.689,-33.649,6.394)
C2': (-11.392,-32.615,5.084)
O2': (-10.775,-32.487,3.817)
N1: (-13.061,-34.397,5.856)
O4: (-16.775,-35.330,7.108)
O2: (-13.611,-35.384,3.880)
C6: (-13.452,-34.056,7.123)
C5: (-14.668,-34.339,7.603)
O3': (-9.471,-31.361,5.678)
Image (generated by PyMOL):