Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A41:A40
Extra
PDB:
ATOM 1 O3' U A 40 -3.741 46.012 -39.378 1.00110.91 O
ATOM 2 P G A 41 -3.002 44.554 -39.364 1.00109.37 P
ATOM 3 OP1 G A 41 -3.218 43.983 -40.744 1.00109.39 O
ATOM 4 OP2 G A 41 -3.741 43.826 -38.299 1.00109.40 O
ATOM 5 O5' G A 41 -1.518 44.998 -39.037 1.00107.66 O
ATOM 6 C5' G A 41 -0.944 44.830 -37.726 1.00105.28 C
ATOM 7 C4' G A 41 -1.041 46.160 -37.002 1.00103.31 C
ATOM 8 O4' G A 41 -2.371 46.632 -36.989 1.00102.88 O
ATOM 9 C3' G A 41 -0.648 46.051 -35.514 1.00102.00 C
ATOM 10 O3' G A 41 0.762 46.110 -35.309 1.00100.04 O
ATOM 11 C2' G A 41 -1.404 47.204 -34.886 1.00102.25 C
ATOM 12 O2' G A 41 -0.631 48.385 -34.982 1.00102.27 O
ATOM 13 C1' G A 41 -2.661 47.273 -35.733 1.00102.50 C
ATOM 14 N9 G A 41 -3.787 46.623 -35.036 1.00102.47 N
ATOM 15 C8 G A 41 -4.810 45.913 -35.637 1.00102.45 C
ATOM 16 N7 G A 41 -5.686 45.441 -34.790 1.00102.43 N
ATOM 17 C5 G A 41 -5.225 45.884 -33.562 1.00102.37 C
ATOM 18 C6 G A 41 -5.743 45.697 -32.251 1.00102.32 C
ATOM 19 O6 G A 41 -6.772 45.076 -31.950 1.00102.28 O
ATOM 20 N1 G A 41 -5.009 46.278 -31.254 1.00102.29 N
ATOM 21 C2 G A 41 -3.866 46.977 -31.513 1.00102.30 C
ATOM 22 N2 G A 41 -3.269 47.479 -30.421 1.00102.27 N
ATOM 23 N3 G A 41 -3.338 47.184 -32.715 1.00102.31 N
ATOM 24 C4 G A 41 -4.060 46.603 -33.698 1.00102.36 C
ATOM 25 P A A 42 1.518 44.682 -35.118 1.00 98.36 P
ATOM 26 OP1 A A 42 1.854 44.101 -36.456 1.00 98.36 O
ATOM 27 OP2 A A 42 0.512 43.865 -34.394 1.00 98.40 O
ATOM 28 O5' A A 42 2.786 45.066 -34.244 1.00 96.48 O
TER
ATOM 1 O3' C B 39 -9.596 44.828 -41.274 1.00119.12 O
ATOM 2 P U B 40 -8.728 43.619 -41.058 1.00118.10 P
ATOM 3 OP1 U B 40 -8.228 43.008 -42.355 1.00118.17 O
ATOM 4 OP2 U B 40 -9.769 42.742 -40.443 1.00118.11 O
ATOM 5 O5' U B 40 -7.506 44.023 -40.143 1.00116.81 O
ATOM 6 C5' U B 40 -6.266 44.456 -40.757 1.00115.09 C
ATOM 7 C4' U B 40 -6.033 45.884 -40.307 1.00113.69 C
ATOM 8 O4' U B 40 -7.261 46.455 -39.924 1.00113.52 O
ATOM 9 C3' U B 40 -5.134 46.022 -39.078 1.00112.65 C
ATOM 10 O3' U B 40 -3.741 46.012 -39.378 1.00110.91 O
ATOM 11 C2' U B 40 -5.584 47.371 -38.504 1.00113.01 C
ATOM 12 O2' U B 40 -4.924 48.376 -39.269 1.00112.99 O
ATOM 13 C1' U B 40 -7.056 47.341 -38.805 1.00113.44 C
ATOM 14 N1 U B 40 -7.830 46.928 -37.617 1.00113.65 N
ATOM 15 C2 U B 40 -7.687 47.706 -36.483 1.00113.75 C
ATOM 16 O2 U B 40 -6.943 48.681 -36.470 1.00113.71 O
ATOM 17 N3 U B 40 -8.393 47.332 -35.378 1.00113.79 N
ATOM 18 C4 U B 40 -9.223 46.248 -35.364 1.00113.80 C
ATOM 19 O4 U B 40 -9.825 46.012 -34.272 1.00113.89 O
ATOM 20 C5 U B 40 -9.359 45.460 -36.538 1.00113.75 C
ATOM 21 C6 U B 40 -8.648 45.844 -37.617 1.00113.72 C
ATOM 22 P G B 41 -3.002 44.554 -39.364 1.00109.37 P
ATOM 23 OP1 G B 41 -3.218 43.983 -40.744 1.00109.39 O
ATOM 24 OP2 G B 41 -3.741 43.826 -38.299 1.00109.40 O
ATOM 25 O5' G B 41 -1.518 44.998 -39.037 1.00107.66 O
TER
ATOM 2 P G A 41 -3.002 44.554 -39.364 1.00109.37 P
ATOM 3 OP1 G A 41 -3.218 43.983 -40.744 1.00109.39 O
ATOM 4 OP2 G A 41 -3.741 43.826 -38.299 1.00109.40 O
ATOM 5 O5' G A 41 -1.518 44.998 -39.037 1.00107.66 O
ATOM 6 C5' G A 41 -0.944 44.830 -37.726 1.00105.28 C
ATOM 7 C4' G A 41 -1.041 46.160 -37.002 1.00103.31 C
ATOM 8 O4' G A 41 -2.371 46.632 -36.989 1.00102.88 O
ATOM 9 C3' G A 41 -0.648 46.051 -35.514 1.00102.00 C
ATOM 10 O3' G A 41 0.762 46.110 -35.309 1.00100.04 O
ATOM 11 C2' G A 41 -1.404 47.204 -34.886 1.00102.25 C
ATOM 12 O2' G A 41 -0.631 48.385 -34.982 1.00102.27 O
ATOM 13 C1' G A 41 -2.661 47.273 -35.733 1.00102.50 C
ATOM 14 N9 G A 41 -3.787 46.623 -35.036 1.00102.47 N
ATOM 15 C8 G A 41 -4.810 45.913 -35.637 1.00102.45 C
ATOM 16 N7 G A 41 -5.686 45.441 -34.790 1.00102.43 N
ATOM 17 C5 G A 41 -5.225 45.884 -33.562 1.00102.37 C
ATOM 18 C6 G A 41 -5.743 45.697 -32.251 1.00102.32 C
ATOM 19 O6 G A 41 -6.772 45.076 -31.950 1.00102.28 O
ATOM 20 N1 G A 41 -5.009 46.278 -31.254 1.00102.29 N
ATOM 21 C2 G A 41 -3.866 46.977 -31.513 1.00102.30 C
ATOM 22 N2 G A 41 -3.269 47.479 -30.421 1.00102.27 N
ATOM 23 N3 G A 41 -3.338 47.184 -32.715 1.00102.31 N
ATOM 24 C4 G A 41 -4.060 46.603 -33.698 1.00102.36 C
ATOM 25 P A A 42 1.518 44.682 -35.118 1.00 98.36 P
ATOM 26 OP1 A A 42 1.854 44.101 -36.456 1.00 98.36 O
ATOM 27 OP2 A A 42 0.512 43.865 -34.394 1.00 98.40 O
ATOM 28 O5' A A 42 2.786 45.066 -34.244 1.00 96.48 O
TER
ATOM 1 O3' C B 39 -9.596 44.828 -41.274 1.00119.12 O
ATOM 2 P U B 40 -8.728 43.619 -41.058 1.00118.10 P
ATOM 3 OP1 U B 40 -8.228 43.008 -42.355 1.00118.17 O
ATOM 4 OP2 U B 40 -9.769 42.742 -40.443 1.00118.11 O
ATOM 5 O5' U B 40 -7.506 44.023 -40.143 1.00116.81 O
ATOM 6 C5' U B 40 -6.266 44.456 -40.757 1.00115.09 C
ATOM 7 C4' U B 40 -6.033 45.884 -40.307 1.00113.69 C
ATOM 8 O4' U B 40 -7.261 46.455 -39.924 1.00113.52 O
ATOM 9 C3' U B 40 -5.134 46.022 -39.078 1.00112.65 C
ATOM 10 O3' U B 40 -3.741 46.012 -39.378 1.00110.91 O
ATOM 11 C2' U B 40 -5.584 47.371 -38.504 1.00113.01 C
ATOM 12 O2' U B 40 -4.924 48.376 -39.269 1.00112.99 O
ATOM 13 C1' U B 40 -7.056 47.341 -38.805 1.00113.44 C
ATOM 14 N1 U B 40 -7.830 46.928 -37.617 1.00113.65 N
ATOM 15 C2 U B 40 -7.687 47.706 -36.483 1.00113.75 C
ATOM 16 O2 U B 40 -6.943 48.681 -36.470 1.00113.71 O
ATOM 17 N3 U B 40 -8.393 47.332 -35.378 1.00113.79 N
ATOM 18 C4 U B 40 -9.223 46.248 -35.364 1.00113.80 C
ATOM 19 O4 U B 40 -9.825 46.012 -34.272 1.00113.89 O
ATOM 20 C5 U B 40 -9.359 45.460 -36.538 1.00113.75 C
ATOM 21 C6 U B 40 -8.648 45.844 -37.617 1.00113.72 C
ATOM 22 P G B 41 -3.002 44.554 -39.364 1.00109.37 P
ATOM 23 OP1 G B 41 -3.218 43.983 -40.744 1.00109.39 O
ATOM 24 OP2 G B 41 -3.741 43.826 -38.299 1.00109.40 O
ATOM 25 O5' G B 41 -1.518 44.998 -39.037 1.00107.66 O
TER
Atoms:
OP1: (-3.218,43.983,-40.744)
OP2: (-3.741,43.826,-38.299)
C3': (-0.648,46.051,-35.514)
C1': (-2.661,47.273,-35.733)
C5': (-0.944,44.830,-37.726)
O6: (-6.772,45.076,-31.950)
O4': (-2.371,46.632,-36.989)
C8: (-4.810,45.913,-35.637)
C2: (-3.866,46.977,-31.513)
C6: (-5.743,45.697,-32.251)
C5: (-5.225,45.884,-33.562)
C4: (-4.060,46.603,-33.698)
P: (-3.002,44.554,-39.364)
C4': (-1.041,46.160,-37.002)
C2': (-1.404,47.204,-34.886)
O2': (-0.631,48.385,-34.982)
N1: (-5.009,46.278,-31.254)
N2: (-3.269,47.479,-30.421)
N3: (-3.338,47.184,-32.715)
N7: (-5.686,45.441,-34.790)
N9: (-3.787,46.623,-35.036)
O5': (-1.518,44.998,-39.037)
O3': (0.762,46.110,-35.309)
OP2: (-3.741,43.826,-38.299)
C3': (-0.648,46.051,-35.514)
C1': (-2.661,47.273,-35.733)
C5': (-0.944,44.830,-37.726)
O6: (-6.772,45.076,-31.950)
O4': (-2.371,46.632,-36.989)
C8: (-4.810,45.913,-35.637)
C2: (-3.866,46.977,-31.513)
C6: (-5.743,45.697,-32.251)
C5: (-5.225,45.884,-33.562)
C4: (-4.060,46.603,-33.698)
P: (-3.002,44.554,-39.364)
C4': (-1.041,46.160,-37.002)
C2': (-1.404,47.204,-34.886)
O2': (-0.631,48.385,-34.982)
N1: (-5.009,46.278,-31.254)
N2: (-3.269,47.479,-30.421)
N3: (-3.338,47.184,-32.715)
N7: (-5.686,45.441,-34.790)
N9: (-3.787,46.623,-35.036)
O5': (-1.518,44.998,-39.037)
O3': (0.762,46.110,-35.309)
C4: (-9.223,46.248,-35.364)
N3: (-8.393,47.332,-35.378)
OP1: (-8.228,43.008,-42.355)
OP2: (-9.769,42.742,-40.443)
C2: (-7.687,47.706,-36.483)
C1': (-7.056,47.341,-38.805)
C3': (-5.134,46.022,-39.078)
O5': (-7.506,44.023,-40.143)
O4': (-7.261,46.455,-39.924)
C5': (-6.266,44.456,-40.757)
P: (-8.728,43.619,-41.058)
C4': (-6.033,45.884,-40.307)
C2': (-5.584,47.371,-38.504)
O2': (-4.924,48.376,-39.269)
N1: (-7.830,46.928,-37.617)
O4: (-9.825,46.012,-34.272)
O2: (-6.943,48.681,-36.470)
C6: (-8.648,45.844,-37.617)
C5: (-9.359,45.460,-36.538)
O3': (-3.741,46.012,-39.378)
N3: (-8.393,47.332,-35.378)
OP1: (-8.228,43.008,-42.355)
OP2: (-9.769,42.742,-40.443)
C2: (-7.687,47.706,-36.483)
C1': (-7.056,47.341,-38.805)
C3': (-5.134,46.022,-39.078)
O5': (-7.506,44.023,-40.143)
O4': (-7.261,46.455,-39.924)
C5': (-6.266,44.456,-40.757)
P: (-8.728,43.619,-41.058)
C4': (-6.033,45.884,-40.307)
C2': (-5.584,47.371,-38.504)
O2': (-4.924,48.376,-39.269)
N1: (-7.830,46.928,-37.617)
O4: (-9.825,46.012,-34.272)
O2: (-6.943,48.681,-36.470)
C6: (-8.648,45.844,-37.617)
C5: (-9.359,45.460,-36.538)
O3': (-3.741,46.012,-39.378)
Image (generated by PyMOL):