Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B21:B42
Extra
PDB:
ATOM 1 O3' U A 20 -20.781 47.773 12.241 1.00 71.33 O
ATOM 2 P C A 21 -20.220 46.475 11.486 1.00 70.04 P
ATOM 3 OP1 C A 21 -19.452 46.933 10.302 1.00 68.27 O
ATOM 4 OP2 C A 21 -21.366 45.536 11.324 1.00 68.52 O
ATOM 5 O5' C A 21 -19.183 45.825 12.501 1.00 69.57 O
ATOM 6 C5' C A 21 -19.569 44.797 13.402 1.00 68.47 C
ATOM 7 C4' C A 21 -18.337 44.159 13.989 1.00 68.59 C
ATOM 8 O4' C A 21 -17.726 43.274 13.020 1.00 68.24 O
ATOM 9 C3' C A 21 -17.237 45.139 14.344 1.00 69.55 C
ATOM 10 O3' C A 21 -17.450 45.694 15.629 1.00 72.91 O
ATOM 11 C2' C A 21 -15.975 44.288 14.279 1.00 67.69 C
ATOM 12 O2' C A 21 -15.761 43.557 15.469 1.00 69.14 O
ATOM 13 C1' C A 21 -16.314 43.305 13.160 1.00 65.88 C
ATOM 14 N1 C A 21 -15.725 43.615 11.847 1.00 62.11 N
ATOM 15 C2 C A 21 -14.343 43.432 11.642 1.00 60.81 C
ATOM 16 O2 C A 21 -13.630 43.057 12.588 1.00 61.74 O
ATOM 17 N3 C A 21 -13.827 43.665 10.418 1.00 58.74 N
ATOM 18 C4 C A 21 -14.624 44.056 9.422 1.00 58.50 C
ATOM 19 N4 C A 21 -14.079 44.240 8.219 1.00 57.43 N
ATOM 20 C5 C A 21 -16.018 44.269 9.610 1.00 58.28 C
ATOM 21 C6 C A 21 -16.519 44.047 10.826 1.00 59.61 C
ATOM 22 P C A 22 -17.080 47.228 15.885 1.00 73.53 P
ATOM 23 OP1 C A 22 -17.682 47.625 17.179 1.00 74.19 O
ATOM 24 OP2 C A 22 -17.458 47.955 14.651 1.00 73.26 O
ATOM 25 O5' C A 22 -15.493 47.213 16.022 1.00 74.17 O
TER
ATOM 1 O3' C B 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 2 P A B 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 3 OP1 A B 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 4 OP2 A B 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 5 O5' A B 42 -10.548 34.425 18.172 1.00 77.82 O
ATOM 6 C5' A B 42 -9.918 35.066 19.273 1.00 77.26 C
ATOM 7 C4' A B 42 -10.863 36.073 19.873 1.00 77.17 C
ATOM 8 O4' A B 42 -10.533 37.408 19.419 1.00 77.69 O
ATOM 9 C3' A B 42 -12.312 35.864 19.470 1.00 76.93 C
ATOM 10 O3' A B 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 11 C2' A B 42 -12.916 37.257 19.595 1.00 77.50 C
ATOM 12 O2' A B 42 -13.367 37.548 20.896 1.00 77.68 O
ATOM 13 C1' A B 42 -11.727 38.153 19.231 1.00 78.44 C
ATOM 14 N9 A B 42 -11.764 38.626 17.846 1.00 79.17 N
ATOM 15 C8 A B 42 -10.932 38.290 16.804 1.00 78.60 C
ATOM 16 N7 A B 42 -11.218 38.904 15.681 1.00 78.80 N
ATOM 17 C5 A B 42 -12.315 39.694 16.002 1.00 78.94 C
ATOM 18 C6 A B 42 -13.090 40.593 15.244 1.00 78.73 C
ATOM 19 N6 A B 42 -12.866 40.867 13.957 1.00 77.82 N
ATOM 20 N1 A B 42 -14.117 41.213 15.865 1.00 79.32 N
ATOM 21 C2 A B 42 -14.337 40.950 17.160 1.00 80.17 C
ATOM 22 N3 A B 42 -13.675 40.131 17.980 1.00 80.23 N
ATOM 23 C4 A B 42 -12.664 39.527 17.330 1.00 79.19 C
ATOM 24 P A B 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 25 OP1 A B 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 26 OP2 A B 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 27 O5' A B 43 -15.359 35.493 19.860 1.00 75.99 O
TER
ATOM 2 P C A 21 -20.220 46.475 11.486 1.00 70.04 P
ATOM 3 OP1 C A 21 -19.452 46.933 10.302 1.00 68.27 O
ATOM 4 OP2 C A 21 -21.366 45.536 11.324 1.00 68.52 O
ATOM 5 O5' C A 21 -19.183 45.825 12.501 1.00 69.57 O
ATOM 6 C5' C A 21 -19.569 44.797 13.402 1.00 68.47 C
ATOM 7 C4' C A 21 -18.337 44.159 13.989 1.00 68.59 C
ATOM 8 O4' C A 21 -17.726 43.274 13.020 1.00 68.24 O
ATOM 9 C3' C A 21 -17.237 45.139 14.344 1.00 69.55 C
ATOM 10 O3' C A 21 -17.450 45.694 15.629 1.00 72.91 O
ATOM 11 C2' C A 21 -15.975 44.288 14.279 1.00 67.69 C
ATOM 12 O2' C A 21 -15.761 43.557 15.469 1.00 69.14 O
ATOM 13 C1' C A 21 -16.314 43.305 13.160 1.00 65.88 C
ATOM 14 N1 C A 21 -15.725 43.615 11.847 1.00 62.11 N
ATOM 15 C2 C A 21 -14.343 43.432 11.642 1.00 60.81 C
ATOM 16 O2 C A 21 -13.630 43.057 12.588 1.00 61.74 O
ATOM 17 N3 C A 21 -13.827 43.665 10.418 1.00 58.74 N
ATOM 18 C4 C A 21 -14.624 44.056 9.422 1.00 58.50 C
ATOM 19 N4 C A 21 -14.079 44.240 8.219 1.00 57.43 N
ATOM 20 C5 C A 21 -16.018 44.269 9.610 1.00 58.28 C
ATOM 21 C6 C A 21 -16.519 44.047 10.826 1.00 59.61 C
ATOM 22 P C A 22 -17.080 47.228 15.885 1.00 73.53 P
ATOM 23 OP1 C A 22 -17.682 47.625 17.179 1.00 74.19 O
ATOM 24 OP2 C A 22 -17.458 47.955 14.651 1.00 73.26 O
ATOM 25 O5' C A 22 -15.493 47.213 16.022 1.00 74.17 O
TER
ATOM 1 O3' C B 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 2 P A B 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 3 OP1 A B 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 4 OP2 A B 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 5 O5' A B 42 -10.548 34.425 18.172 1.00 77.82 O
ATOM 6 C5' A B 42 -9.918 35.066 19.273 1.00 77.26 C
ATOM 7 C4' A B 42 -10.863 36.073 19.873 1.00 77.17 C
ATOM 8 O4' A B 42 -10.533 37.408 19.419 1.00 77.69 O
ATOM 9 C3' A B 42 -12.312 35.864 19.470 1.00 76.93 C
ATOM 10 O3' A B 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 11 C2' A B 42 -12.916 37.257 19.595 1.00 77.50 C
ATOM 12 O2' A B 42 -13.367 37.548 20.896 1.00 77.68 O
ATOM 13 C1' A B 42 -11.727 38.153 19.231 1.00 78.44 C
ATOM 14 N9 A B 42 -11.764 38.626 17.846 1.00 79.17 N
ATOM 15 C8 A B 42 -10.932 38.290 16.804 1.00 78.60 C
ATOM 16 N7 A B 42 -11.218 38.904 15.681 1.00 78.80 N
ATOM 17 C5 A B 42 -12.315 39.694 16.002 1.00 78.94 C
ATOM 18 C6 A B 42 -13.090 40.593 15.244 1.00 78.73 C
ATOM 19 N6 A B 42 -12.866 40.867 13.957 1.00 77.82 N
ATOM 20 N1 A B 42 -14.117 41.213 15.865 1.00 79.32 N
ATOM 21 C2 A B 42 -14.337 40.950 17.160 1.00 80.17 C
ATOM 22 N3 A B 42 -13.675 40.131 17.980 1.00 80.23 N
ATOM 23 C4 A B 42 -12.664 39.527 17.330 1.00 79.19 C
ATOM 24 P A B 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 25 OP1 A B 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 26 OP2 A B 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 27 O5' A B 43 -15.359 35.493 19.860 1.00 75.99 O
TER
Atoms:
C2: (-14.343,43.432,11.642)
OP1: (-19.452,46.933,10.302)
OP2: (-21.366,45.536,11.324)
C4: (-14.624,44.056,9.422)
O5': (-19.183,45.825,12.501)
C3': (-17.237,45.139,14.344)
C1': (-16.314,43.305,13.160)
O4': (-17.726,43.274,13.020)
C5': (-19.569,44.797,13.402)
P: (-20.220,46.475,11.486)
O2: (-13.630,43.057,12.588)
C4': (-18.337,44.159,13.989)
C2': (-15.975,44.288,14.279)
O2': (-15.761,43.557,15.469)
N1: (-15.725,43.615,11.847)
N3: (-13.827,43.665,10.418)
N4: (-14.079,44.240,8.219)
C6: (-16.519,44.047,10.826)
C5: (-16.018,44.269,9.610)
O3': (-17.450,45.694,15.629)
OP1: (-19.452,46.933,10.302)
OP2: (-21.366,45.536,11.324)
C4: (-14.624,44.056,9.422)
O5': (-19.183,45.825,12.501)
C3': (-17.237,45.139,14.344)
C1': (-16.314,43.305,13.160)
O4': (-17.726,43.274,13.020)
C5': (-19.569,44.797,13.402)
P: (-20.220,46.475,11.486)
O2: (-13.630,43.057,12.588)
C4': (-18.337,44.159,13.989)
C2': (-15.975,44.288,14.279)
O2': (-15.761,43.557,15.469)
N1: (-15.725,43.615,11.847)
N3: (-13.827,43.665,10.418)
N4: (-14.079,44.240,8.219)
C6: (-16.519,44.047,10.826)
C5: (-16.018,44.269,9.610)
O3': (-17.450,45.694,15.629)
OP1: (-8.283,34.256,17.083)
OP2: (-10.091,32.445,16.747)
C3': (-12.312,35.864,19.470)
C1': (-11.727,38.153,19.231)
C5': (-9.918,35.066,19.273)
O4': (-10.533,37.408,19.419)
C8: (-10.932,38.290,16.804)
O2': (-13.367,37.548,20.896)
C6: (-13.090,40.593,15.244)
C5: (-12.315,39.694,16.002)
C4: (-12.664,39.527,17.330)
P: (-9.717,33.876,16.933)
C4': (-10.863,36.073,19.873)
C2': (-12.916,37.257,19.595)
C2: (-14.337,40.950,17.160)
N1: (-14.117,41.213,15.865)
N3: (-13.675,40.131,17.980)
N6: (-12.866,40.867,13.957)
N7: (-11.218,38.904,15.681)
N9: (-11.764,38.626,17.846)
O5': (-10.548,34.425,18.172)
O3': (-12.956,34.902,20.286)
OP2: (-10.091,32.445,16.747)
C3': (-12.312,35.864,19.470)
C1': (-11.727,38.153,19.231)
C5': (-9.918,35.066,19.273)
O4': (-10.533,37.408,19.419)
C8: (-10.932,38.290,16.804)
O2': (-13.367,37.548,20.896)
C6: (-13.090,40.593,15.244)
C5: (-12.315,39.694,16.002)
C4: (-12.664,39.527,17.330)
P: (-9.717,33.876,16.933)
C4': (-10.863,36.073,19.873)
C2': (-12.916,37.257,19.595)
C2: (-14.337,40.950,17.160)
N1: (-14.117,41.213,15.865)
N3: (-13.675,40.131,17.980)
N6: (-12.866,40.867,13.957)
N7: (-11.218,38.904,15.681)
N9: (-11.764,38.626,17.846)
O5': (-10.548,34.425,18.172)
O3': (-12.956,34.902,20.286)
Image (generated by PyMOL):