Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2G:A12:A11
Extra
PDB:
ATOM 1 O3' U A 11 -9.398 -24.001 21.849 1.00 40.90 O
ATOM 2 P G A 12 -9.200 -25.535 21.310 1.00 45.49 P
ATOM 3 OP1 G A 12 -9.873 -25.537 20.000 1.00 38.28 O
ATOM 4 OP2 G A 12 -9.636 -26.394 22.413 1.00 48.43 O
ATOM 5 O5' G A 12 -7.626 -25.759 21.129 1.00 38.53 O
ATOM 6 C5' G A 12 -6.986 -24.999 20.135 1.00 41.40 C
ATOM 7 C4' G A 12 -5.644 -24.437 20.572 1.00 39.91 C
ATOM 8 O4' G A 12 -5.748 -23.218 21.386 1.00 40.99 O
ATOM 9 C3' G A 12 -4.788 -25.344 21.420 1.00 38.07 C
ATOM 10 O3' G A 12 -4.143 -26.254 20.591 1.00 38.10 O
ATOM 11 C2' G A 12 -3.799 -24.325 22.005 1.00 41.51 C
ATOM 12 O2' G A 12 -2.909 -23.699 21.081 1.00 42.35 O
ATOM 13 C1' G A 12 -4.755 -23.232 22.404 1.00 36.93 C
ATOM 14 N9 G A 12 -5.396 -23.303 23.711 1.00 36.12 N
ATOM 15 C8 G A 12 -6.701 -23.695 24.010 1.00 36.51 C
ATOM 16 N7 G A 12 -6.977 -23.652 25.293 1.00 36.18 N
ATOM 17 C5 G A 12 -5.785 -23.222 25.882 1.00 34.27 C
ATOM 18 C6 G A 12 -5.468 -22.950 27.235 1.00 33.57 C
ATOM 19 O6 G A 12 -6.222 -23.034 28.186 1.00 34.03 O
ATOM 20 N1 G A 12 -4.172 -22.530 27.431 1.00 31.60 N
ATOM 21 C2 G A 12 -3.254 -22.353 26.424 1.00 37.78 C
ATOM 22 N2 G A 12 -2.020 -21.914 26.766 1.00 34.60 N
ATOM 23 N3 G A 12 -3.528 -22.620 25.143 1.00 35.93 N
ATOM 24 C4 G A 12 -4.811 -22.999 24.934 1.00 35.81 C
ATOM 25 P C A 13 -3.688 -27.646 21.261 1.00 38.68 P
ATOM 26 OP1 C A 13 -2.999 -28.492 20.255 1.00 38.22 O
ATOM 27 OP2 C A 13 -4.788 -28.128 22.118 1.00 36.51 O
ATOM 28 O5' C A 13 -2.534 -27.212 22.271 1.00 41.11 O
TER
ATOM 1 O3' G B 10 -9.956 -19.700 17.704 1.00 36.38 O
ATOM 2 P U B 11 -10.052 -21.305 17.493 1.00 39.46 P
ATOM 3 OP1 U B 11 -8.743 -21.789 16.999 1.00 36.46 O
ATOM 4 OP2 U B 11 -11.396 -21.647 16.922 1.00 29.92 O
ATOM 5 O5' U B 11 -10.162 -21.690 19.032 1.00 37.06 O
ATOM 6 C5' U B 11 -9.118 -21.607 19.929 1.00 39.96 C
ATOM 7 C4' U B 11 -9.733 -21.836 21.317 1.00 41.71 C
ATOM 8 O4' U B 11 -10.736 -20.802 21.640 1.00 36.81 O
ATOM 9 C3' U B 11 -10.455 -23.150 21.492 1.00 36.17 C
ATOM 10 O3' U B 11 -9.398 -24.001 21.849 1.00 40.90 O
ATOM 11 C2' U B 11 -11.326 -22.849 22.706 1.00 41.41 C
ATOM 12 O2' U B 11 -10.654 -23.025 23.959 1.00 42.72 O
ATOM 13 C1' U B 11 -11.640 -21.344 22.570 1.00 35.92 C
ATOM 14 N1 U B 11 -12.957 -21.084 22.099 1.00 36.18 N
ATOM 15 C2 U B 11 -13.780 -20.439 22.988 1.00 39.54 C
ATOM 16 O2 U B 11 -13.306 -20.155 24.063 1.00 40.29 O
ATOM 17 N3 U B 11 -15.087 -20.179 22.606 1.00 34.53 N
ATOM 18 C4 U B 11 -15.558 -20.505 21.355 1.00 36.79 C
ATOM 19 O4 U B 11 -16.702 -20.228 21.053 1.00 41.74 O
ATOM 20 C5 U B 11 -14.633 -21.167 20.466 1.00 38.00 C
ATOM 21 C6 U B 11 -13.384 -21.437 20.854 1.00 36.89 C
ATOM 22 P G B 12 -9.200 -25.535 21.310 1.00 45.49 P
ATOM 23 OP1 G B 12 -9.873 -25.537 20.000 1.00 38.28 O
ATOM 24 OP2 G B 12 -9.636 -26.394 22.413 1.00 48.43 O
ATOM 25 O5' G B 12 -7.626 -25.759 21.129 1.00 38.53 O
TER
ATOM 2 P G A 12 -9.200 -25.535 21.310 1.00 45.49 P
ATOM 3 OP1 G A 12 -9.873 -25.537 20.000 1.00 38.28 O
ATOM 4 OP2 G A 12 -9.636 -26.394 22.413 1.00 48.43 O
ATOM 5 O5' G A 12 -7.626 -25.759 21.129 1.00 38.53 O
ATOM 6 C5' G A 12 -6.986 -24.999 20.135 1.00 41.40 C
ATOM 7 C4' G A 12 -5.644 -24.437 20.572 1.00 39.91 C
ATOM 8 O4' G A 12 -5.748 -23.218 21.386 1.00 40.99 O
ATOM 9 C3' G A 12 -4.788 -25.344 21.420 1.00 38.07 C
ATOM 10 O3' G A 12 -4.143 -26.254 20.591 1.00 38.10 O
ATOM 11 C2' G A 12 -3.799 -24.325 22.005 1.00 41.51 C
ATOM 12 O2' G A 12 -2.909 -23.699 21.081 1.00 42.35 O
ATOM 13 C1' G A 12 -4.755 -23.232 22.404 1.00 36.93 C
ATOM 14 N9 G A 12 -5.396 -23.303 23.711 1.00 36.12 N
ATOM 15 C8 G A 12 -6.701 -23.695 24.010 1.00 36.51 C
ATOM 16 N7 G A 12 -6.977 -23.652 25.293 1.00 36.18 N
ATOM 17 C5 G A 12 -5.785 -23.222 25.882 1.00 34.27 C
ATOM 18 C6 G A 12 -5.468 -22.950 27.235 1.00 33.57 C
ATOM 19 O6 G A 12 -6.222 -23.034 28.186 1.00 34.03 O
ATOM 20 N1 G A 12 -4.172 -22.530 27.431 1.00 31.60 N
ATOM 21 C2 G A 12 -3.254 -22.353 26.424 1.00 37.78 C
ATOM 22 N2 G A 12 -2.020 -21.914 26.766 1.00 34.60 N
ATOM 23 N3 G A 12 -3.528 -22.620 25.143 1.00 35.93 N
ATOM 24 C4 G A 12 -4.811 -22.999 24.934 1.00 35.81 C
ATOM 25 P C A 13 -3.688 -27.646 21.261 1.00 38.68 P
ATOM 26 OP1 C A 13 -2.999 -28.492 20.255 1.00 38.22 O
ATOM 27 OP2 C A 13 -4.788 -28.128 22.118 1.00 36.51 O
ATOM 28 O5' C A 13 -2.534 -27.212 22.271 1.00 41.11 O
TER
ATOM 1 O3' G B 10 -9.956 -19.700 17.704 1.00 36.38 O
ATOM 2 P U B 11 -10.052 -21.305 17.493 1.00 39.46 P
ATOM 3 OP1 U B 11 -8.743 -21.789 16.999 1.00 36.46 O
ATOM 4 OP2 U B 11 -11.396 -21.647 16.922 1.00 29.92 O
ATOM 5 O5' U B 11 -10.162 -21.690 19.032 1.00 37.06 O
ATOM 6 C5' U B 11 -9.118 -21.607 19.929 1.00 39.96 C
ATOM 7 C4' U B 11 -9.733 -21.836 21.317 1.00 41.71 C
ATOM 8 O4' U B 11 -10.736 -20.802 21.640 1.00 36.81 O
ATOM 9 C3' U B 11 -10.455 -23.150 21.492 1.00 36.17 C
ATOM 10 O3' U B 11 -9.398 -24.001 21.849 1.00 40.90 O
ATOM 11 C2' U B 11 -11.326 -22.849 22.706 1.00 41.41 C
ATOM 12 O2' U B 11 -10.654 -23.025 23.959 1.00 42.72 O
ATOM 13 C1' U B 11 -11.640 -21.344 22.570 1.00 35.92 C
ATOM 14 N1 U B 11 -12.957 -21.084 22.099 1.00 36.18 N
ATOM 15 C2 U B 11 -13.780 -20.439 22.988 1.00 39.54 C
ATOM 16 O2 U B 11 -13.306 -20.155 24.063 1.00 40.29 O
ATOM 17 N3 U B 11 -15.087 -20.179 22.606 1.00 34.53 N
ATOM 18 C4 U B 11 -15.558 -20.505 21.355 1.00 36.79 C
ATOM 19 O4 U B 11 -16.702 -20.228 21.053 1.00 41.74 O
ATOM 20 C5 U B 11 -14.633 -21.167 20.466 1.00 38.00 C
ATOM 21 C6 U B 11 -13.384 -21.437 20.854 1.00 36.89 C
ATOM 22 P G B 12 -9.200 -25.535 21.310 1.00 45.49 P
ATOM 23 OP1 G B 12 -9.873 -25.537 20.000 1.00 38.28 O
ATOM 24 OP2 G B 12 -9.636 -26.394 22.413 1.00 48.43 O
ATOM 25 O5' G B 12 -7.626 -25.759 21.129 1.00 38.53 O
TER
Atoms:
OP1: (-9.873,-25.537,20.000)
OP2: (-9.636,-26.394,22.413)
C3': (-4.788,-25.344,21.420)
C1': (-4.755,-23.232,22.404)
C5': (-6.986,-24.999,20.135)
O6: (-6.222,-23.034,28.186)
O4': (-5.748,-23.218,21.386)
C8: (-6.701,-23.695,24.010)
C2: (-3.254,-22.353,26.424)
C6: (-5.468,-22.950,27.235)
C5: (-5.785,-23.222,25.882)
C4: (-4.811,-22.999,24.934)
P: (-9.200,-25.535,21.310)
C4': (-5.644,-24.437,20.572)
C2': (-3.799,-24.325,22.005)
O2': (-2.909,-23.699,21.081)
N1: (-4.172,-22.530,27.431)
N2: (-2.020,-21.914,26.766)
N3: (-3.528,-22.620,25.143)
N7: (-6.977,-23.652,25.293)
N9: (-5.396,-23.303,23.711)
O5': (-7.626,-25.759,21.129)
O3': (-4.143,-26.254,20.591)
OP2: (-9.636,-26.394,22.413)
C3': (-4.788,-25.344,21.420)
C1': (-4.755,-23.232,22.404)
C5': (-6.986,-24.999,20.135)
O6: (-6.222,-23.034,28.186)
O4': (-5.748,-23.218,21.386)
C8: (-6.701,-23.695,24.010)
C2: (-3.254,-22.353,26.424)
C6: (-5.468,-22.950,27.235)
C5: (-5.785,-23.222,25.882)
C4: (-4.811,-22.999,24.934)
P: (-9.200,-25.535,21.310)
C4': (-5.644,-24.437,20.572)
C2': (-3.799,-24.325,22.005)
O2': (-2.909,-23.699,21.081)
N1: (-4.172,-22.530,27.431)
N2: (-2.020,-21.914,26.766)
N3: (-3.528,-22.620,25.143)
N7: (-6.977,-23.652,25.293)
N9: (-5.396,-23.303,23.711)
O5': (-7.626,-25.759,21.129)
O3': (-4.143,-26.254,20.591)
C4: (-15.558,-20.505,21.355)
N3: (-15.087,-20.179,22.606)
OP1: (-8.743,-21.789,16.999)
OP2: (-11.396,-21.647,16.922)
C2: (-13.780,-20.439,22.988)
C1': (-11.640,-21.344,22.570)
C3': (-10.455,-23.150,21.492)
O5': (-10.162,-21.690,19.032)
O4': (-10.736,-20.802,21.640)
C5': (-9.118,-21.607,19.929)
P: (-10.052,-21.305,17.493)
C4': (-9.733,-21.836,21.317)
C2': (-11.326,-22.849,22.706)
O2': (-10.654,-23.025,23.959)
N1: (-12.957,-21.084,22.099)
O4: (-16.702,-20.228,21.053)
O2: (-13.306,-20.155,24.063)
C6: (-13.384,-21.437,20.854)
C5: (-14.633,-21.167,20.466)
O3': (-9.398,-24.001,21.849)
N3: (-15.087,-20.179,22.606)
OP1: (-8.743,-21.789,16.999)
OP2: (-11.396,-21.647,16.922)
C2: (-13.780,-20.439,22.988)
C1': (-11.640,-21.344,22.570)
C3': (-10.455,-23.150,21.492)
O5': (-10.162,-21.690,19.032)
O4': (-10.736,-20.802,21.640)
C5': (-9.118,-21.607,19.929)
P: (-10.052,-21.305,17.493)
C4': (-9.733,-21.836,21.317)
C2': (-11.326,-22.849,22.706)
O2': (-10.654,-23.025,23.959)
N1: (-12.957,-21.084,22.099)
O4: (-16.702,-20.228,21.053)
O2: (-13.306,-20.155,24.063)
C6: (-13.384,-21.437,20.854)
C5: (-14.633,-21.167,20.466)
O3': (-9.398,-24.001,21.849)
Image (generated by PyMOL):