Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1561:A1560
Extra
PDB:
ATOM 1 O3' U A1560 36.924 -44.263 -15.592 1.00 47.50 O
ATOM 2 P G A1561 37.159 -43.120 -14.504 1.00 58.99 P
ATOM 3 OP1 G A1561 38.546 -42.640 -14.736 1.00 51.18 O
ATOM 4 OP2 G A1561 36.767 -43.607 -13.150 1.00 59.97 O
ATOM 5 O5' G A1561 36.133 -41.980 -14.962 1.00 60.63 O
ATOM 6 C5' G A1561 36.467 -41.054 -16.019 1.00 50.98 C
ATOM 7 C4' G A1561 35.309 -40.876 -16.995 1.00 53.21 C
ATOM 8 O4' G A1561 35.132 -42.070 -17.808 1.00 51.53 O
ATOM 9 C3' G A1561 33.937 -40.645 -16.388 1.00 50.70 C
ATOM 10 O3' G A1561 33.748 -39.316 -15.955 1.00 42.74 O
ATOM 11 C2' G A1561 32.997 -41.074 -17.505 1.00 52.79 C
ATOM 12 O2' G A1561 32.855 -40.081 -18.496 1.00 54.33 O
ATOM 13 C1' G A1561 33.754 -42.260 -18.099 1.00 51.90 C
ATOM 14 N9 G A1561 33.315 -43.545 -17.544 1.00 48.87 N
ATOM 15 C8 G A1561 34.059 -44.458 -16.829 1.00 49.67 C
ATOM 16 N7 G A1561 33.366 -45.498 -16.448 1.00 52.57 N
ATOM 17 C5 G A1561 32.084 -45.267 -16.946 1.00 60.52 C
ATOM 18 C6 G A1561 30.867 -46.055 -16.853 1.00 59.69 C
ATOM 19 O6 G A1561 30.681 -47.169 -16.296 1.00 56.99 O
ATOM 20 N1 G A1561 29.806 -45.420 -17.497 1.00 54.09 N
ATOM 21 C2 G A1561 29.884 -44.208 -18.146 1.00 52.75 C
ATOM 22 N2 G A1561 28.757 -43.756 -18.698 1.00 51.15 N
ATOM 23 N3 G A1561 30.985 -43.485 -18.247 1.00 55.85 N
ATOM 24 C4 G A1561 32.039 -44.067 -17.629 1.00 56.32 C
ATOM 25 P G A1562 33.082 -39.058 -14.518 1.00 53.72 P
ATOM 26 OP1 G A1562 33.600 -37.768 -13.982 1.00 46.97 O
ATOM 27 OP2 G A1562 33.244 -40.305 -13.709 1.00 46.54 O
ATOM 28 O5' G A1562 31.538 -38.871 -14.870 1.00 55.23 O
TER
ATOM 1 O3' G B1559 42.409 -46.430 -12.815 1.00 44.48 O
ATOM 2 P U B1560 41.037 -45.639 -12.488 1.00 36.85 P
ATOM 3 OP1 U B1560 41.332 -44.189 -12.511 1.00 52.75 O
ATOM 4 OP2 U B1560 40.401 -46.232 -11.290 1.00 37.01 O
ATOM 5 O5' U B1560 40.049 -45.952 -13.700 1.00 42.81 O
ATOM 6 C5' U B1560 39.998 -45.093 -14.825 1.00 47.72 C
ATOM 7 C4' U B1560 38.954 -45.570 -15.809 1.00 54.27 C
ATOM 8 O4' U B1560 39.190 -46.970 -16.101 1.00 53.43 O
ATOM 9 C3' U B1560 37.491 -45.531 -15.392 1.00 51.05 C
ATOM 10 O3' U B1560 36.924 -44.263 -15.592 1.00 47.50 O
ATOM 11 C2' U B1560 36.873 -46.535 -16.352 1.00 52.79 C
ATOM 12 O2' U B1560 36.695 -46.042 -17.662 1.00 47.13 O
ATOM 13 C1' U B1560 37.959 -47.598 -16.407 1.00 51.19 C
ATOM 14 N1 U B1560 37.661 -48.563 -15.352 1.00 46.46 N
ATOM 15 C2 U B1560 36.669 -49.486 -15.602 1.00 52.83 C
ATOM 16 O2 U B1560 36.064 -49.545 -16.671 1.00 51.66 O
ATOM 17 N3 U B1560 36.399 -50.328 -14.558 1.00 54.85 N
ATOM 18 C4 U B1560 37.006 -50.327 -13.325 1.00 57.72 C
ATOM 19 O4 U B1560 36.631 -51.120 -12.458 1.00 63.00 O
ATOM 20 C5 U B1560 38.029 -49.342 -13.168 1.00 54.19 C
ATOM 21 C6 U B1560 38.316 -48.523 -14.165 1.00 48.44 C
ATOM 22 P G B1561 37.159 -43.120 -14.504 1.00 58.99 P
ATOM 23 OP1 G B1561 38.546 -42.640 -14.736 1.00 51.18 O
ATOM 24 OP2 G B1561 36.767 -43.607 -13.150 1.00 59.97 O
ATOM 25 O5' G B1561 36.133 -41.980 -14.962 1.00 60.63 O
TER
ATOM 2 P G A1561 37.159 -43.120 -14.504 1.00 58.99 P
ATOM 3 OP1 G A1561 38.546 -42.640 -14.736 1.00 51.18 O
ATOM 4 OP2 G A1561 36.767 -43.607 -13.150 1.00 59.97 O
ATOM 5 O5' G A1561 36.133 -41.980 -14.962 1.00 60.63 O
ATOM 6 C5' G A1561 36.467 -41.054 -16.019 1.00 50.98 C
ATOM 7 C4' G A1561 35.309 -40.876 -16.995 1.00 53.21 C
ATOM 8 O4' G A1561 35.132 -42.070 -17.808 1.00 51.53 O
ATOM 9 C3' G A1561 33.937 -40.645 -16.388 1.00 50.70 C
ATOM 10 O3' G A1561 33.748 -39.316 -15.955 1.00 42.74 O
ATOM 11 C2' G A1561 32.997 -41.074 -17.505 1.00 52.79 C
ATOM 12 O2' G A1561 32.855 -40.081 -18.496 1.00 54.33 O
ATOM 13 C1' G A1561 33.754 -42.260 -18.099 1.00 51.90 C
ATOM 14 N9 G A1561 33.315 -43.545 -17.544 1.00 48.87 N
ATOM 15 C8 G A1561 34.059 -44.458 -16.829 1.00 49.67 C
ATOM 16 N7 G A1561 33.366 -45.498 -16.448 1.00 52.57 N
ATOM 17 C5 G A1561 32.084 -45.267 -16.946 1.00 60.52 C
ATOM 18 C6 G A1561 30.867 -46.055 -16.853 1.00 59.69 C
ATOM 19 O6 G A1561 30.681 -47.169 -16.296 1.00 56.99 O
ATOM 20 N1 G A1561 29.806 -45.420 -17.497 1.00 54.09 N
ATOM 21 C2 G A1561 29.884 -44.208 -18.146 1.00 52.75 C
ATOM 22 N2 G A1561 28.757 -43.756 -18.698 1.00 51.15 N
ATOM 23 N3 G A1561 30.985 -43.485 -18.247 1.00 55.85 N
ATOM 24 C4 G A1561 32.039 -44.067 -17.629 1.00 56.32 C
ATOM 25 P G A1562 33.082 -39.058 -14.518 1.00 53.72 P
ATOM 26 OP1 G A1562 33.600 -37.768 -13.982 1.00 46.97 O
ATOM 27 OP2 G A1562 33.244 -40.305 -13.709 1.00 46.54 O
ATOM 28 O5' G A1562 31.538 -38.871 -14.870 1.00 55.23 O
TER
ATOM 1 O3' G B1559 42.409 -46.430 -12.815 1.00 44.48 O
ATOM 2 P U B1560 41.037 -45.639 -12.488 1.00 36.85 P
ATOM 3 OP1 U B1560 41.332 -44.189 -12.511 1.00 52.75 O
ATOM 4 OP2 U B1560 40.401 -46.232 -11.290 1.00 37.01 O
ATOM 5 O5' U B1560 40.049 -45.952 -13.700 1.00 42.81 O
ATOM 6 C5' U B1560 39.998 -45.093 -14.825 1.00 47.72 C
ATOM 7 C4' U B1560 38.954 -45.570 -15.809 1.00 54.27 C
ATOM 8 O4' U B1560 39.190 -46.970 -16.101 1.00 53.43 O
ATOM 9 C3' U B1560 37.491 -45.531 -15.392 1.00 51.05 C
ATOM 10 O3' U B1560 36.924 -44.263 -15.592 1.00 47.50 O
ATOM 11 C2' U B1560 36.873 -46.535 -16.352 1.00 52.79 C
ATOM 12 O2' U B1560 36.695 -46.042 -17.662 1.00 47.13 O
ATOM 13 C1' U B1560 37.959 -47.598 -16.407 1.00 51.19 C
ATOM 14 N1 U B1560 37.661 -48.563 -15.352 1.00 46.46 N
ATOM 15 C2 U B1560 36.669 -49.486 -15.602 1.00 52.83 C
ATOM 16 O2 U B1560 36.064 -49.545 -16.671 1.00 51.66 O
ATOM 17 N3 U B1560 36.399 -50.328 -14.558 1.00 54.85 N
ATOM 18 C4 U B1560 37.006 -50.327 -13.325 1.00 57.72 C
ATOM 19 O4 U B1560 36.631 -51.120 -12.458 1.00 63.00 O
ATOM 20 C5 U B1560 38.029 -49.342 -13.168 1.00 54.19 C
ATOM 21 C6 U B1560 38.316 -48.523 -14.165 1.00 48.44 C
ATOM 22 P G B1561 37.159 -43.120 -14.504 1.00 58.99 P
ATOM 23 OP1 G B1561 38.546 -42.640 -14.736 1.00 51.18 O
ATOM 24 OP2 G B1561 36.767 -43.607 -13.150 1.00 59.97 O
ATOM 25 O5' G B1561 36.133 -41.980 -14.962 1.00 60.63 O
TER
Atoms:
OP1: (38.546,-42.640,-14.736)
OP2: (36.767,-43.607,-13.150)
C3': (33.937,-40.645,-16.388)
C1': (33.754,-42.260,-18.099)
C5': (36.467,-41.054,-16.019)
O6: (30.681,-47.169,-16.296)
O4': (35.132,-42.070,-17.808)
C8: (34.059,-44.458,-16.829)
C2: (29.884,-44.208,-18.146)
C6: (30.867,-46.055,-16.853)
C5: (32.084,-45.267,-16.946)
C4: (32.039,-44.067,-17.629)
P: (37.159,-43.120,-14.504)
C4': (35.309,-40.876,-16.995)
C2': (32.997,-41.074,-17.505)
O2': (32.855,-40.081,-18.496)
N1: (29.806,-45.420,-17.497)
N2: (28.757,-43.756,-18.698)
N3: (30.985,-43.485,-18.247)
N7: (33.366,-45.498,-16.448)
N9: (33.315,-43.545,-17.544)
O5': (36.133,-41.980,-14.962)
O3': (33.748,-39.316,-15.955)
OP2: (36.767,-43.607,-13.150)
C3': (33.937,-40.645,-16.388)
C1': (33.754,-42.260,-18.099)
C5': (36.467,-41.054,-16.019)
O6: (30.681,-47.169,-16.296)
O4': (35.132,-42.070,-17.808)
C8: (34.059,-44.458,-16.829)
C2: (29.884,-44.208,-18.146)
C6: (30.867,-46.055,-16.853)
C5: (32.084,-45.267,-16.946)
C4: (32.039,-44.067,-17.629)
P: (37.159,-43.120,-14.504)
C4': (35.309,-40.876,-16.995)
C2': (32.997,-41.074,-17.505)
O2': (32.855,-40.081,-18.496)
N1: (29.806,-45.420,-17.497)
N2: (28.757,-43.756,-18.698)
N3: (30.985,-43.485,-18.247)
N7: (33.366,-45.498,-16.448)
N9: (33.315,-43.545,-17.544)
O5': (36.133,-41.980,-14.962)
O3': (33.748,-39.316,-15.955)
C4: (37.006,-50.327,-13.325)
N3: (36.399,-50.328,-14.558)
OP1: (41.332,-44.189,-12.511)
OP2: (40.401,-46.232,-11.290)
C2: (36.669,-49.486,-15.602)
C1': (37.959,-47.598,-16.407)
C3': (37.491,-45.531,-15.392)
O5': (40.049,-45.952,-13.700)
O4': (39.190,-46.970,-16.101)
C5': (39.998,-45.093,-14.825)
P: (41.037,-45.639,-12.488)
C4': (38.954,-45.570,-15.809)
C2': (36.873,-46.535,-16.352)
O2': (36.695,-46.042,-17.662)
N1: (37.661,-48.563,-15.352)
O4: (36.631,-51.120,-12.458)
O2: (36.064,-49.545,-16.671)
C6: (38.316,-48.523,-14.165)
C5: (38.029,-49.342,-13.168)
O3': (36.924,-44.263,-15.592)
N3: (36.399,-50.328,-14.558)
OP1: (41.332,-44.189,-12.511)
OP2: (40.401,-46.232,-11.290)
C2: (36.669,-49.486,-15.602)
C1': (37.959,-47.598,-16.407)
C3': (37.491,-45.531,-15.392)
O5': (40.049,-45.952,-13.700)
O4': (39.190,-46.970,-16.101)
C5': (39.998,-45.093,-14.825)
P: (41.037,-45.639,-12.488)
C4': (38.954,-45.570,-15.809)
C2': (36.873,-46.535,-16.352)
O2': (36.695,-46.042,-17.662)
N1: (37.661,-48.563,-15.352)
O4: (36.631,-51.120,-12.458)
O2: (36.064,-49.545,-16.671)
C6: (38.316,-48.523,-14.165)
C5: (38.029,-49.342,-13.168)
O3': (36.924,-44.263,-15.592)
Image (generated by PyMOL):