Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBZ:B21:B42
Extra
PDB:
ATOM 1 O3' U A 20 33.399 78.930 76.004 1.00 65.20 O
ATOM 2 P C A 21 33.629 77.695 75.007 1.00 64.54 P
ATOM 3 OP1 C A 21 34.154 78.231 73.715 1.00 62.76 O
ATOM 4 OP2 C A 21 32.389 76.876 75.023 1.00 60.98 O
ATOM 5 O5' C A 21 34.784 76.848 75.695 1.00 63.41 O
ATOM 6 C5' C A 21 34.526 76.048 76.833 1.00 63.19 C
ATOM 7 C4' C A 21 35.819 75.473 77.340 1.00 64.06 C
ATOM 8 O4' C A 21 36.365 74.585 76.338 1.00 63.80 O
ATOM 9 C3' C A 21 36.915 76.494 77.587 1.00 65.28 C
ATOM 10 O3' C A 21 36.789 77.029 78.896 1.00 69.15 O
ATOM 11 C2' C A 21 38.188 75.675 77.421 1.00 63.96 C
ATOM 12 O2' C A 21 38.524 74.971 78.593 1.00 65.88 O
ATOM 13 C1' C A 21 37.774 74.658 76.360 1.00 62.67 C
ATOM 14 N1 C A 21 38.245 74.962 75.007 1.00 60.36 N
ATOM 15 C2 C A 21 39.575 74.725 74.716 1.00 59.56 C
ATOM 16 O2 C A 21 40.308 74.309 75.615 1.00 60.81 O
ATOM 17 N3 C A 21 40.032 74.958 73.470 1.00 58.46 N
ATOM 18 C4 C A 21 39.210 75.428 72.536 1.00 58.41 C
ATOM 19 N4 C A 21 39.709 75.643 71.318 1.00 58.54 N
ATOM 20 C5 C A 21 37.839 75.698 72.808 1.00 58.05 C
ATOM 21 C6 C A 21 37.402 75.451 74.049 1.00 59.56 C
ATOM 22 P C A 22 37.176 78.562 79.167 1.00 70.86 P
ATOM 23 OP1 C A 22 36.688 78.923 80.523 1.00 71.67 O
ATOM 24 OP2 C A 22 36.743 79.363 77.996 1.00 70.61 O
ATOM 25 O5' C A 22 38.765 78.536 79.203 1.00 72.73 O
TER
ATOM 1 O3' C B 41 43.664 66.057 78.569 1.00 75.81 O
ATOM 2 P A B 42 44.468 65.471 79.828 1.00 77.64 P
ATOM 3 OP1 A B 42 45.843 66.044 79.846 1.00 76.52 O
ATOM 4 OP2 A B 42 44.282 63.999 79.836 1.00 77.42 O
ATOM 5 O5' A B 42 43.656 66.054 81.064 1.00 77.13 O
ATOM 6 C5' A B 42 44.314 66.598 82.199 1.00 75.07 C
ATOM 7 C4' A B 42 43.426 67.631 82.838 1.00 74.65 C
ATOM 8 O4' A B 42 43.751 68.960 82.358 1.00 75.14 O
ATOM 9 C3' A B 42 41.955 67.454 82.511 1.00 73.89 C
ATOM 10 O3' A B 42 41.344 66.470 83.320 1.00 72.20 O
ATOM 11 C2' A B 42 41.390 68.855 82.701 1.00 74.75 C
ATOM 12 O2' A B 42 41.051 69.161 84.037 1.00 73.81 O
ATOM 13 C1' A B 42 42.563 69.722 82.235 1.00 75.21 C
ATOM 14 N9 A B 42 42.424 70.110 80.833 1.00 76.32 N
ATOM 15 C8 A B 42 43.162 69.675 79.760 1.00 76.23 C
ATOM 16 N7 A B 42 42.801 70.211 78.618 1.00 76.72 N
ATOM 17 C5 A B 42 41.754 71.056 78.964 1.00 76.44 C
ATOM 18 C6 A B 42 40.942 71.912 78.205 1.00 76.24 C
ATOM 19 N6 A B 42 41.060 72.068 76.885 1.00 76.04 N
ATOM 20 N1 A B 42 39.989 72.611 78.856 1.00 76.52 N
ATOM 21 C2 A B 42 39.867 72.450 80.179 1.00 76.38 C
ATOM 22 N3 A B 42 40.568 71.676 81.002 1.00 75.95 N
ATOM 23 C4 A B 42 41.509 70.999 80.324 1.00 76.34 C
ATOM 24 P A B 43 40.099 65.645 82.740 1.00 72.00 P
ATOM 25 OP1 A B 43 39.843 64.470 83.615 1.00 71.80 O
ATOM 26 OP2 A B 43 40.348 65.439 81.285 1.00 71.29 O
ATOM 27 O5' A B 43 38.883 66.662 82.898 1.00 71.20 O
TER
ATOM 2 P C A 21 33.629 77.695 75.007 1.00 64.54 P
ATOM 3 OP1 C A 21 34.154 78.231 73.715 1.00 62.76 O
ATOM 4 OP2 C A 21 32.389 76.876 75.023 1.00 60.98 O
ATOM 5 O5' C A 21 34.784 76.848 75.695 1.00 63.41 O
ATOM 6 C5' C A 21 34.526 76.048 76.833 1.00 63.19 C
ATOM 7 C4' C A 21 35.819 75.473 77.340 1.00 64.06 C
ATOM 8 O4' C A 21 36.365 74.585 76.338 1.00 63.80 O
ATOM 9 C3' C A 21 36.915 76.494 77.587 1.00 65.28 C
ATOM 10 O3' C A 21 36.789 77.029 78.896 1.00 69.15 O
ATOM 11 C2' C A 21 38.188 75.675 77.421 1.00 63.96 C
ATOM 12 O2' C A 21 38.524 74.971 78.593 1.00 65.88 O
ATOM 13 C1' C A 21 37.774 74.658 76.360 1.00 62.67 C
ATOM 14 N1 C A 21 38.245 74.962 75.007 1.00 60.36 N
ATOM 15 C2 C A 21 39.575 74.725 74.716 1.00 59.56 C
ATOM 16 O2 C A 21 40.308 74.309 75.615 1.00 60.81 O
ATOM 17 N3 C A 21 40.032 74.958 73.470 1.00 58.46 N
ATOM 18 C4 C A 21 39.210 75.428 72.536 1.00 58.41 C
ATOM 19 N4 C A 21 39.709 75.643 71.318 1.00 58.54 N
ATOM 20 C5 C A 21 37.839 75.698 72.808 1.00 58.05 C
ATOM 21 C6 C A 21 37.402 75.451 74.049 1.00 59.56 C
ATOM 22 P C A 22 37.176 78.562 79.167 1.00 70.86 P
ATOM 23 OP1 C A 22 36.688 78.923 80.523 1.00 71.67 O
ATOM 24 OP2 C A 22 36.743 79.363 77.996 1.00 70.61 O
ATOM 25 O5' C A 22 38.765 78.536 79.203 1.00 72.73 O
TER
ATOM 1 O3' C B 41 43.664 66.057 78.569 1.00 75.81 O
ATOM 2 P A B 42 44.468 65.471 79.828 1.00 77.64 P
ATOM 3 OP1 A B 42 45.843 66.044 79.846 1.00 76.52 O
ATOM 4 OP2 A B 42 44.282 63.999 79.836 1.00 77.42 O
ATOM 5 O5' A B 42 43.656 66.054 81.064 1.00 77.13 O
ATOM 6 C5' A B 42 44.314 66.598 82.199 1.00 75.07 C
ATOM 7 C4' A B 42 43.426 67.631 82.838 1.00 74.65 C
ATOM 8 O4' A B 42 43.751 68.960 82.358 1.00 75.14 O
ATOM 9 C3' A B 42 41.955 67.454 82.511 1.00 73.89 C
ATOM 10 O3' A B 42 41.344 66.470 83.320 1.00 72.20 O
ATOM 11 C2' A B 42 41.390 68.855 82.701 1.00 74.75 C
ATOM 12 O2' A B 42 41.051 69.161 84.037 1.00 73.81 O
ATOM 13 C1' A B 42 42.563 69.722 82.235 1.00 75.21 C
ATOM 14 N9 A B 42 42.424 70.110 80.833 1.00 76.32 N
ATOM 15 C8 A B 42 43.162 69.675 79.760 1.00 76.23 C
ATOM 16 N7 A B 42 42.801 70.211 78.618 1.00 76.72 N
ATOM 17 C5 A B 42 41.754 71.056 78.964 1.00 76.44 C
ATOM 18 C6 A B 42 40.942 71.912 78.205 1.00 76.24 C
ATOM 19 N6 A B 42 41.060 72.068 76.885 1.00 76.04 N
ATOM 20 N1 A B 42 39.989 72.611 78.856 1.00 76.52 N
ATOM 21 C2 A B 42 39.867 72.450 80.179 1.00 76.38 C
ATOM 22 N3 A B 42 40.568 71.676 81.002 1.00 75.95 N
ATOM 23 C4 A B 42 41.509 70.999 80.324 1.00 76.34 C
ATOM 24 P A B 43 40.099 65.645 82.740 1.00 72.00 P
ATOM 25 OP1 A B 43 39.843 64.470 83.615 1.00 71.80 O
ATOM 26 OP2 A B 43 40.348 65.439 81.285 1.00 71.29 O
ATOM 27 O5' A B 43 38.883 66.662 82.898 1.00 71.20 O
TER
Atoms:
C2: (39.575,74.725,74.716)
OP1: (34.154,78.231,73.715)
OP2: (32.389,76.876,75.023)
C4: (39.210,75.428,72.536)
O5': (34.784,76.848,75.695)
C3': (36.915,76.494,77.587)
C1': (37.774,74.658,76.360)
O4': (36.365,74.585,76.338)
C5': (34.526,76.048,76.833)
P: (33.629,77.695,75.007)
O2: (40.308,74.309,75.615)
C4': (35.819,75.473,77.340)
C2': (38.188,75.675,77.421)
O2': (38.524,74.971,78.593)
N1: (38.245,74.962,75.007)
N3: (40.032,74.958,73.470)
N4: (39.709,75.643,71.318)
C6: (37.402,75.451,74.049)
C5: (37.839,75.698,72.808)
O3': (36.789,77.029,78.896)
OP1: (34.154,78.231,73.715)
OP2: (32.389,76.876,75.023)
C4: (39.210,75.428,72.536)
O5': (34.784,76.848,75.695)
C3': (36.915,76.494,77.587)
C1': (37.774,74.658,76.360)
O4': (36.365,74.585,76.338)
C5': (34.526,76.048,76.833)
P: (33.629,77.695,75.007)
O2: (40.308,74.309,75.615)
C4': (35.819,75.473,77.340)
C2': (38.188,75.675,77.421)
O2': (38.524,74.971,78.593)
N1: (38.245,74.962,75.007)
N3: (40.032,74.958,73.470)
N4: (39.709,75.643,71.318)
C6: (37.402,75.451,74.049)
C5: (37.839,75.698,72.808)
O3': (36.789,77.029,78.896)
OP1: (45.843,66.044,79.846)
OP2: (44.282,63.999,79.836)
C3': (41.955,67.454,82.511)
C1': (42.563,69.722,82.235)
C5': (44.314,66.598,82.199)
O4': (43.751,68.960,82.358)
C8: (43.162,69.675,79.760)
O2': (41.051,69.161,84.037)
C6: (40.942,71.912,78.205)
C5: (41.754,71.056,78.964)
C4: (41.509,70.999,80.324)
P: (44.468,65.471,79.828)
C4': (43.426,67.631,82.838)
C2': (41.390,68.855,82.701)
C2: (39.867,72.450,80.179)
N1: (39.989,72.611,78.856)
N3: (40.568,71.676,81.002)
N6: (41.060,72.068,76.885)
N7: (42.801,70.211,78.618)
N9: (42.424,70.110,80.833)
O5': (43.656,66.054,81.064)
O3': (41.344,66.470,83.320)
OP2: (44.282,63.999,79.836)
C3': (41.955,67.454,82.511)
C1': (42.563,69.722,82.235)
C5': (44.314,66.598,82.199)
O4': (43.751,68.960,82.358)
C8: (43.162,69.675,79.760)
O2': (41.051,69.161,84.037)
C6: (40.942,71.912,78.205)
C5: (41.754,71.056,78.964)
C4: (41.509,70.999,80.324)
P: (44.468,65.471,79.828)
C4': (43.426,67.631,82.838)
C2': (41.390,68.855,82.701)
C2: (39.867,72.450,80.179)
N1: (39.989,72.611,78.856)
N3: (40.568,71.676,81.002)
N6: (41.060,72.068,76.885)
N7: (42.801,70.211,78.618)
N9: (42.424,70.110,80.833)
O5': (43.656,66.054,81.064)
O3': (41.344,66.470,83.320)
Image (generated by PyMOL):