Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B12:B11
Extra
PDB:
ATOM 1 O3' U A 11 -10.837 31.413 -4.009 1.00 33.49 O
ATOM 2 P G A 12 -10.588 29.906 -4.478 1.00 39.33 P
ATOM 3 OP1 G A 12 -11.033 29.784 -5.884 1.00 30.38 O
ATOM 4 OP2 G A 12 -11.125 28.994 -3.443 1.00 36.76 O
ATOM 5 O5' G A 12 -8.990 29.825 -4.451 1.00 31.83 O
ATOM 6 C5' G A 12 -8.248 30.435 -5.496 1.00 29.29 C
ATOM 7 C4' G A 12 -7.070 31.206 -4.931 1.00 26.91 C
ATOM 8 O4' G A 12 -7.549 32.337 -4.162 1.00 28.75 O
ATOM 9 C3' G A 12 -6.211 30.436 -3.939 1.00 29.66 C
ATOM 10 O3' G A 12 -5.294 29.596 -4.622 1.00 26.83 O
ATOM 11 C2' G A 12 -5.501 31.595 -3.255 1.00 29.79 C
ATOM 12 O2' G A 12 -4.513 32.171 -4.084 1.00 25.30 O
ATOM 13 C1' G A 12 -6.655 32.575 -3.089 1.00 30.18 C
ATOM 14 N9 G A 12 -7.380 32.427 -1.829 1.00 32.94 N
ATOM 15 C8 G A 12 -8.672 31.989 -1.665 1.00 29.29 C
ATOM 16 N7 G A 12 -9.055 31.968 -0.420 1.00 32.24 N
ATOM 17 C5 G A 12 -7.949 32.423 0.287 1.00 31.41 C
ATOM 18 C6 G A 12 -7.770 32.610 1.676 1.00 32.08 C
ATOM 19 O6 G A 12 -8.588 32.406 2.584 1.00 33.69 O
ATOM 20 N1 G A 12 -6.495 33.084 1.976 1.00 32.69 N
ATOM 21 C2 G A 12 -5.515 33.346 1.048 1.00 34.20 C
ATOM 22 N2 G A 12 -4.345 33.805 1.524 1.00 27.82 N
ATOM 23 N3 G A 12 -5.672 33.172 -0.258 1.00 32.02 N
ATOM 24 C4 G A 12 -6.908 32.710 -0.565 1.00 32.21 C
ATOM 25 P C A 13 -4.901 28.181 -3.993 1.00 30.69 P
ATOM 26 OP1 C A 13 -4.080 27.456 -4.988 1.00 28.72 O
ATOM 27 OP2 C A 13 -6.134 27.568 -3.451 1.00 30.74 O
ATOM 28 O5' C A 13 -3.949 28.577 -2.771 1.00 29.55 O
TER
ATOM 1 O3' G B 10 -11.014 35.808 -8.477 1.00 29.25 O
ATOM 2 P U B 11 -10.996 34.215 -8.636 1.00 35.26 P
ATOM 3 OP1 U B 11 -9.603 33.813 -8.929 1.00 37.81 O
ATOM 4 OP2 U B 11 -12.099 33.836 -9.547 1.00 29.99 O
ATOM 5 O5' U B 11 -11.351 33.691 -7.170 1.00 31.09 O
ATOM 6 C5' U B 11 -10.462 33.920 -6.089 1.00 31.92 C
ATOM 7 C4' U B 11 -11.185 33.649 -4.785 1.00 33.01 C
ATOM 8 O4' U B 11 -12.316 34.542 -4.697 1.00 33.44 O
ATOM 9 C3' U B 11 -11.777 32.251 -4.657 1.00 30.56 C
ATOM 10 O3' U B 11 -10.837 31.413 -4.009 1.00 33.49 O
ATOM 11 C2' U B 11 -12.986 32.464 -3.751 1.00 34.06 C
ATOM 12 O2' U B 11 -12.685 32.164 -2.405 1.00 36.93 O
ATOM 13 C1' U B 11 -13.303 33.954 -3.878 1.00 34.14 C
ATOM 14 N1 U B 11 -14.634 34.219 -4.473 1.00 35.78 N
ATOM 15 C2 U B 11 -15.618 34.751 -3.671 1.00 38.61 C
ATOM 16 O2 U B 11 -15.446 35.017 -2.495 1.00 37.19 O
ATOM 17 N3 U B 11 -16.820 34.960 -4.298 1.00 37.11 N
ATOM 18 C4 U B 11 -17.126 34.693 -5.617 1.00 36.81 C
ATOM 19 O4 U B 11 -18.254 34.934 -6.034 1.00 39.45 O
ATOM 20 C5 U B 11 -16.045 34.139 -6.392 1.00 37.83 C
ATOM 21 C6 U B 11 -14.864 33.924 -5.801 1.00 36.73 C
ATOM 22 P G B 12 -10.588 29.906 -4.478 1.00 39.33 P
ATOM 23 OP1 G B 12 -11.033 29.784 -5.884 1.00 30.38 O
ATOM 24 OP2 G B 12 -11.125 28.994 -3.443 1.00 36.76 O
ATOM 25 O5' G B 12 -8.990 29.825 -4.451 1.00 31.83 O
TER
ATOM 2 P G A 12 -10.588 29.906 -4.478 1.00 39.33 P
ATOM 3 OP1 G A 12 -11.033 29.784 -5.884 1.00 30.38 O
ATOM 4 OP2 G A 12 -11.125 28.994 -3.443 1.00 36.76 O
ATOM 5 O5' G A 12 -8.990 29.825 -4.451 1.00 31.83 O
ATOM 6 C5' G A 12 -8.248 30.435 -5.496 1.00 29.29 C
ATOM 7 C4' G A 12 -7.070 31.206 -4.931 1.00 26.91 C
ATOM 8 O4' G A 12 -7.549 32.337 -4.162 1.00 28.75 O
ATOM 9 C3' G A 12 -6.211 30.436 -3.939 1.00 29.66 C
ATOM 10 O3' G A 12 -5.294 29.596 -4.622 1.00 26.83 O
ATOM 11 C2' G A 12 -5.501 31.595 -3.255 1.00 29.79 C
ATOM 12 O2' G A 12 -4.513 32.171 -4.084 1.00 25.30 O
ATOM 13 C1' G A 12 -6.655 32.575 -3.089 1.00 30.18 C
ATOM 14 N9 G A 12 -7.380 32.427 -1.829 1.00 32.94 N
ATOM 15 C8 G A 12 -8.672 31.989 -1.665 1.00 29.29 C
ATOM 16 N7 G A 12 -9.055 31.968 -0.420 1.00 32.24 N
ATOM 17 C5 G A 12 -7.949 32.423 0.287 1.00 31.41 C
ATOM 18 C6 G A 12 -7.770 32.610 1.676 1.00 32.08 C
ATOM 19 O6 G A 12 -8.588 32.406 2.584 1.00 33.69 O
ATOM 20 N1 G A 12 -6.495 33.084 1.976 1.00 32.69 N
ATOM 21 C2 G A 12 -5.515 33.346 1.048 1.00 34.20 C
ATOM 22 N2 G A 12 -4.345 33.805 1.524 1.00 27.82 N
ATOM 23 N3 G A 12 -5.672 33.172 -0.258 1.00 32.02 N
ATOM 24 C4 G A 12 -6.908 32.710 -0.565 1.00 32.21 C
ATOM 25 P C A 13 -4.901 28.181 -3.993 1.00 30.69 P
ATOM 26 OP1 C A 13 -4.080 27.456 -4.988 1.00 28.72 O
ATOM 27 OP2 C A 13 -6.134 27.568 -3.451 1.00 30.74 O
ATOM 28 O5' C A 13 -3.949 28.577 -2.771 1.00 29.55 O
TER
ATOM 1 O3' G B 10 -11.014 35.808 -8.477 1.00 29.25 O
ATOM 2 P U B 11 -10.996 34.215 -8.636 1.00 35.26 P
ATOM 3 OP1 U B 11 -9.603 33.813 -8.929 1.00 37.81 O
ATOM 4 OP2 U B 11 -12.099 33.836 -9.547 1.00 29.99 O
ATOM 5 O5' U B 11 -11.351 33.691 -7.170 1.00 31.09 O
ATOM 6 C5' U B 11 -10.462 33.920 -6.089 1.00 31.92 C
ATOM 7 C4' U B 11 -11.185 33.649 -4.785 1.00 33.01 C
ATOM 8 O4' U B 11 -12.316 34.542 -4.697 1.00 33.44 O
ATOM 9 C3' U B 11 -11.777 32.251 -4.657 1.00 30.56 C
ATOM 10 O3' U B 11 -10.837 31.413 -4.009 1.00 33.49 O
ATOM 11 C2' U B 11 -12.986 32.464 -3.751 1.00 34.06 C
ATOM 12 O2' U B 11 -12.685 32.164 -2.405 1.00 36.93 O
ATOM 13 C1' U B 11 -13.303 33.954 -3.878 1.00 34.14 C
ATOM 14 N1 U B 11 -14.634 34.219 -4.473 1.00 35.78 N
ATOM 15 C2 U B 11 -15.618 34.751 -3.671 1.00 38.61 C
ATOM 16 O2 U B 11 -15.446 35.017 -2.495 1.00 37.19 O
ATOM 17 N3 U B 11 -16.820 34.960 -4.298 1.00 37.11 N
ATOM 18 C4 U B 11 -17.126 34.693 -5.617 1.00 36.81 C
ATOM 19 O4 U B 11 -18.254 34.934 -6.034 1.00 39.45 O
ATOM 20 C5 U B 11 -16.045 34.139 -6.392 1.00 37.83 C
ATOM 21 C6 U B 11 -14.864 33.924 -5.801 1.00 36.73 C
ATOM 22 P G B 12 -10.588 29.906 -4.478 1.00 39.33 P
ATOM 23 OP1 G B 12 -11.033 29.784 -5.884 1.00 30.38 O
ATOM 24 OP2 G B 12 -11.125 28.994 -3.443 1.00 36.76 O
ATOM 25 O5' G B 12 -8.990 29.825 -4.451 1.00 31.83 O
TER
Atoms:
OP1: (-11.033,29.784,-5.884)
OP2: (-11.125,28.994,-3.443)
C3': (-6.211,30.436,-3.939)
C1': (-6.655,32.575,-3.089)
C5': (-8.248,30.435,-5.496)
O6: (-8.588,32.406,2.584)
O4': (-7.549,32.337,-4.162)
C8: (-8.672,31.989,-1.665)
C2: (-5.515,33.346,1.048)
C6: (-7.770,32.610,1.676)
C5: (-7.949,32.423,0.287)
C4: (-6.908,32.710,-0.565)
P: (-10.588,29.906,-4.478)
C4': (-7.070,31.206,-4.931)
C2': (-5.501,31.595,-3.255)
O2': (-4.513,32.171,-4.084)
N1: (-6.495,33.084,1.976)
N2: (-4.345,33.805,1.524)
N3: (-5.672,33.172,-0.258)
N7: (-9.055,31.968,-0.420)
N9: (-7.380,32.427,-1.829)
O5': (-8.990,29.825,-4.451)
O3': (-5.294,29.596,-4.622)
OP2: (-11.125,28.994,-3.443)
C3': (-6.211,30.436,-3.939)
C1': (-6.655,32.575,-3.089)
C5': (-8.248,30.435,-5.496)
O6: (-8.588,32.406,2.584)
O4': (-7.549,32.337,-4.162)
C8: (-8.672,31.989,-1.665)
C2: (-5.515,33.346,1.048)
C6: (-7.770,32.610,1.676)
C5: (-7.949,32.423,0.287)
C4: (-6.908,32.710,-0.565)
P: (-10.588,29.906,-4.478)
C4': (-7.070,31.206,-4.931)
C2': (-5.501,31.595,-3.255)
O2': (-4.513,32.171,-4.084)
N1: (-6.495,33.084,1.976)
N2: (-4.345,33.805,1.524)
N3: (-5.672,33.172,-0.258)
N7: (-9.055,31.968,-0.420)
N9: (-7.380,32.427,-1.829)
O5': (-8.990,29.825,-4.451)
O3': (-5.294,29.596,-4.622)
C4: (-17.126,34.693,-5.617)
N3: (-16.820,34.960,-4.298)
OP1: (-9.603,33.813,-8.929)
OP2: (-12.099,33.836,-9.547)
C2: (-15.618,34.751,-3.671)
C1': (-13.303,33.954,-3.878)
C3': (-11.777,32.251,-4.657)
O5': (-11.351,33.691,-7.170)
O4': (-12.316,34.542,-4.697)
C5': (-10.462,33.920,-6.089)
P: (-10.996,34.215,-8.636)
C4': (-11.185,33.649,-4.785)
C2': (-12.986,32.464,-3.751)
O2': (-12.685,32.164,-2.405)
N1: (-14.634,34.219,-4.473)
O4: (-18.254,34.934,-6.034)
O2: (-15.446,35.017,-2.495)
C6: (-14.864,33.924,-5.801)
C5: (-16.045,34.139,-6.392)
O3': (-10.837,31.413,-4.009)
N3: (-16.820,34.960,-4.298)
OP1: (-9.603,33.813,-8.929)
OP2: (-12.099,33.836,-9.547)
C2: (-15.618,34.751,-3.671)
C1': (-13.303,33.954,-3.878)
C3': (-11.777,32.251,-4.657)
O5': (-11.351,33.691,-7.170)
O4': (-12.316,34.542,-4.697)
C5': (-10.462,33.920,-6.089)
P: (-10.996,34.215,-8.636)
C4': (-11.185,33.649,-4.785)
C2': (-12.986,32.464,-3.751)
O2': (-12.685,32.164,-2.405)
N1: (-14.634,34.219,-4.473)
O4: (-18.254,34.934,-6.034)
O2: (-15.446,35.017,-2.495)
C6: (-14.864,33.924,-5.801)
C5: (-16.045,34.139,-6.392)
O3': (-10.837,31.413,-4.009)
Image (generated by PyMOL):