Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:026:0662
Extra
PDB:
ATOM 1 O3' U A 25 46.652 120.335 43.446 1.00 35.70 O
ATOM 2 P C A 26 47.342 120.210 42.004 1.00 36.01 P
ATOM 3 OP1 C A 26 48.306 119.080 42.055 1.00 35.53 O
ATOM 4 OP2 C A 26 47.810 121.559 41.606 1.00 37.21 O
ATOM 5 O5' C A 26 46.141 119.827 41.035 1.00 34.98 O
ATOM 6 C5' C A 26 45.422 118.603 41.198 1.00 34.69 C
ATOM 7 C4' C A 26 44.288 118.539 40.210 1.00 38.05 C
ATOM 8 O4' C A 26 43.350 119.616 40.471 1.00 38.96 O
ATOM 9 C3' C A 26 44.656 118.742 38.749 1.00 38.61 C
ATOM 10 O3' C A 26 45.152 117.553 38.161 1.00 40.82 O
ATOM 11 C2' C A 26 43.316 119.140 38.160 1.00 39.12 C
ATOM 12 O2' C A 26 42.440 118.037 38.113 1.00 40.65 O
ATOM 13 C1' C A 26 42.794 120.069 39.247 1.00 39.11 C
ATOM 14 N1 C A 26 43.205 121.466 39.036 1.00 40.44 N
ATOM 15 C2 C A 26 42.404 122.289 38.241 1.00 41.73 C
ATOM 16 O2 C A 26 41.409 121.803 37.682 1.00 43.19 O
ATOM 17 N3 C A 26 42.735 123.593 38.097 1.00 40.98 N
ATOM 18 C4 C A 26 43.818 124.075 38.702 1.00 39.77 C
ATOM 19 N4 C A 26 44.081 125.369 38.569 1.00 39.11 N
ATOM 20 C5 C A 26 44.674 123.250 39.480 1.00 41.13 C
ATOM 21 C6 C A 26 44.336 121.964 39.620 1.00 40.84 C
ATOM 22 P A A 27 46.138 117.645 36.897 1.00 43.59 P
ATOM 23 OP1 A A 27 46.466 116.251 36.510 1.00 43.23 O
ATOM 24 OP2 A A 27 47.235 118.594 37.203 1.00 43.80 O
ATOM 25 O5' A A 27 45.229 118.284 35.757 1.00 43.73 O
TER
ATOM 1 O3' U B 661 34.648 115.989 28.675 1.00 51.39 O
ATOM 2 P A B 662 34.922 116.570 30.161 1.00 50.97 P
ATOM 3 OP1 A B 662 33.663 117.043 30.795 1.00 50.76 O
ATOM 4 OP2 A B 662 36.084 117.485 30.069 1.00 51.42 O
ATOM 5 O5' A B 662 35.420 115.298 30.968 1.00 48.47 O
ATOM 6 C5' A B 662 36.326 114.365 30.365 1.00 47.53 C
ATOM 7 C4' A B 662 37.129 113.673 31.427 1.00 46.01 C
ATOM 8 O4' A B 662 38.003 114.650 32.047 1.00 46.35 O
ATOM 9 C3' A B 662 36.297 113.067 32.550 1.00 46.22 C
ATOM 10 O3' A B 662 36.951 111.904 33.033 1.00 47.52 O
ATOM 11 C2' A B 662 36.305 114.172 33.599 1.00 45.96 C
ATOM 12 O2' A B 662 36.138 113.711 34.920 1.00 45.48 O
ATOM 13 C1' A B 662 37.712 114.732 33.427 1.00 47.39 C
ATOM 14 N9 A B 662 37.851 116.124 33.856 1.00 48.12 N
ATOM 15 C8 A B 662 37.070 117.213 33.542 1.00 47.95 C
ATOM 16 N7 A B 662 37.465 118.327 34.107 1.00 47.63 N
ATOM 17 C5 A B 662 38.581 117.951 34.839 1.00 48.98 C
ATOM 18 C6 A B 662 39.459 118.675 35.662 1.00 49.66 C
ATOM 19 N6 A B 662 39.358 119.986 35.881 1.00 50.76 N
ATOM 20 N1 A B 662 40.464 117.996 36.254 1.00 49.72 N
ATOM 21 C2 A B 662 40.580 116.679 36.019 1.00 49.48 C
ATOM 22 N3 A B 662 39.826 115.890 35.261 1.00 48.57 N
ATOM 23 C4 A B 662 38.830 116.596 34.694 1.00 49.06 C
ATOM 24 P U B 663 36.395 110.457 32.619 1.00 48.68 P
ATOM 25 OP1 U B 663 37.201 109.438 33.326 1.00 48.90 O
ATOM 26 OP2 U B 663 36.314 110.419 31.135 1.00 49.49 O
ATOM 27 O5' U B 663 34.933 110.431 33.246 1.00 44.25 O
TER
ATOM 2 P C A 26 47.342 120.210 42.004 1.00 36.01 P
ATOM 3 OP1 C A 26 48.306 119.080 42.055 1.00 35.53 O
ATOM 4 OP2 C A 26 47.810 121.559 41.606 1.00 37.21 O
ATOM 5 O5' C A 26 46.141 119.827 41.035 1.00 34.98 O
ATOM 6 C5' C A 26 45.422 118.603 41.198 1.00 34.69 C
ATOM 7 C4' C A 26 44.288 118.539 40.210 1.00 38.05 C
ATOM 8 O4' C A 26 43.350 119.616 40.471 1.00 38.96 O
ATOM 9 C3' C A 26 44.656 118.742 38.749 1.00 38.61 C
ATOM 10 O3' C A 26 45.152 117.553 38.161 1.00 40.82 O
ATOM 11 C2' C A 26 43.316 119.140 38.160 1.00 39.12 C
ATOM 12 O2' C A 26 42.440 118.037 38.113 1.00 40.65 O
ATOM 13 C1' C A 26 42.794 120.069 39.247 1.00 39.11 C
ATOM 14 N1 C A 26 43.205 121.466 39.036 1.00 40.44 N
ATOM 15 C2 C A 26 42.404 122.289 38.241 1.00 41.73 C
ATOM 16 O2 C A 26 41.409 121.803 37.682 1.00 43.19 O
ATOM 17 N3 C A 26 42.735 123.593 38.097 1.00 40.98 N
ATOM 18 C4 C A 26 43.818 124.075 38.702 1.00 39.77 C
ATOM 19 N4 C A 26 44.081 125.369 38.569 1.00 39.11 N
ATOM 20 C5 C A 26 44.674 123.250 39.480 1.00 41.13 C
ATOM 21 C6 C A 26 44.336 121.964 39.620 1.00 40.84 C
ATOM 22 P A A 27 46.138 117.645 36.897 1.00 43.59 P
ATOM 23 OP1 A A 27 46.466 116.251 36.510 1.00 43.23 O
ATOM 24 OP2 A A 27 47.235 118.594 37.203 1.00 43.80 O
ATOM 25 O5' A A 27 45.229 118.284 35.757 1.00 43.73 O
TER
ATOM 1 O3' U B 661 34.648 115.989 28.675 1.00 51.39 O
ATOM 2 P A B 662 34.922 116.570 30.161 1.00 50.97 P
ATOM 3 OP1 A B 662 33.663 117.043 30.795 1.00 50.76 O
ATOM 4 OP2 A B 662 36.084 117.485 30.069 1.00 51.42 O
ATOM 5 O5' A B 662 35.420 115.298 30.968 1.00 48.47 O
ATOM 6 C5' A B 662 36.326 114.365 30.365 1.00 47.53 C
ATOM 7 C4' A B 662 37.129 113.673 31.427 1.00 46.01 C
ATOM 8 O4' A B 662 38.003 114.650 32.047 1.00 46.35 O
ATOM 9 C3' A B 662 36.297 113.067 32.550 1.00 46.22 C
ATOM 10 O3' A B 662 36.951 111.904 33.033 1.00 47.52 O
ATOM 11 C2' A B 662 36.305 114.172 33.599 1.00 45.96 C
ATOM 12 O2' A B 662 36.138 113.711 34.920 1.00 45.48 O
ATOM 13 C1' A B 662 37.712 114.732 33.427 1.00 47.39 C
ATOM 14 N9 A B 662 37.851 116.124 33.856 1.00 48.12 N
ATOM 15 C8 A B 662 37.070 117.213 33.542 1.00 47.95 C
ATOM 16 N7 A B 662 37.465 118.327 34.107 1.00 47.63 N
ATOM 17 C5 A B 662 38.581 117.951 34.839 1.00 48.98 C
ATOM 18 C6 A B 662 39.459 118.675 35.662 1.00 49.66 C
ATOM 19 N6 A B 662 39.358 119.986 35.881 1.00 50.76 N
ATOM 20 N1 A B 662 40.464 117.996 36.254 1.00 49.72 N
ATOM 21 C2 A B 662 40.580 116.679 36.019 1.00 49.48 C
ATOM 22 N3 A B 662 39.826 115.890 35.261 1.00 48.57 N
ATOM 23 C4 A B 662 38.830 116.596 34.694 1.00 49.06 C
ATOM 24 P U B 663 36.395 110.457 32.619 1.00 48.68 P
ATOM 25 OP1 U B 663 37.201 109.438 33.326 1.00 48.90 O
ATOM 26 OP2 U B 663 36.314 110.419 31.135 1.00 49.49 O
ATOM 27 O5' U B 663 34.933 110.431 33.246 1.00 44.25 O
TER
Atoms:
C2: (42.404,122.289,38.241)
OP1: (48.306,119.080,42.055)
OP2: (47.810,121.559,41.606)
C4: (43.818,124.075,38.702)
O5': (46.141,119.827,41.035)
C3': (44.656,118.742,38.749)
C1': (42.794,120.069,39.247)
O4': (43.350,119.616,40.471)
C5': (45.422,118.603,41.198)
P: (47.342,120.210,42.004)
O2: (41.409,121.803,37.682)
C4': (44.288,118.539,40.210)
C2': (43.316,119.140,38.160)
O2': (42.440,118.037,38.113)
N1: (43.205,121.466,39.036)
N3: (42.735,123.593,38.097)
N4: (44.081,125.369,38.569)
C6: (44.336,121.964,39.620)
C5: (44.674,123.250,39.480)
O3': (45.152,117.553,38.161)
OP1: (48.306,119.080,42.055)
OP2: (47.810,121.559,41.606)
C4: (43.818,124.075,38.702)
O5': (46.141,119.827,41.035)
C3': (44.656,118.742,38.749)
C1': (42.794,120.069,39.247)
O4': (43.350,119.616,40.471)
C5': (45.422,118.603,41.198)
P: (47.342,120.210,42.004)
O2: (41.409,121.803,37.682)
C4': (44.288,118.539,40.210)
C2': (43.316,119.140,38.160)
O2': (42.440,118.037,38.113)
N1: (43.205,121.466,39.036)
N3: (42.735,123.593,38.097)
N4: (44.081,125.369,38.569)
C6: (44.336,121.964,39.620)
C5: (44.674,123.250,39.480)
O3': (45.152,117.553,38.161)
OP1: (33.663,117.043,30.795)
OP2: (36.084,117.485,30.069)
C3': (36.297,113.067,32.550)
C1': (37.712,114.732,33.427)
C5': (36.326,114.365,30.365)
O4': (38.003,114.650,32.047)
C8: (37.070,117.213,33.542)
O2': (36.138,113.711,34.920)
C6: (39.459,118.675,35.662)
C5: (38.581,117.951,34.839)
C4: (38.830,116.596,34.694)
P: (34.922,116.570,30.161)
C4': (37.129,113.673,31.427)
C2': (36.305,114.172,33.599)
C2: (40.580,116.679,36.019)
N1: (40.464,117.996,36.254)
N3: (39.826,115.890,35.261)
N6: (39.358,119.986,35.881)
N7: (37.465,118.327,34.107)
N9: (37.851,116.124,33.856)
O5': (35.420,115.298,30.968)
O3': (36.951,111.904,33.033)
OP2: (36.084,117.485,30.069)
C3': (36.297,113.067,32.550)
C1': (37.712,114.732,33.427)
C5': (36.326,114.365,30.365)
O4': (38.003,114.650,32.047)
C8: (37.070,117.213,33.542)
O2': (36.138,113.711,34.920)
C6: (39.459,118.675,35.662)
C5: (38.581,117.951,34.839)
C4: (38.830,116.596,34.694)
P: (34.922,116.570,30.161)
C4': (37.129,113.673,31.427)
C2': (36.305,114.172,33.599)
C2: (40.580,116.679,36.019)
N1: (40.464,117.996,36.254)
N3: (39.826,115.890,35.261)
N6: (39.358,119.986,35.881)
N7: (37.465,118.327,34.107)
N9: (37.851,116.124,33.856)
O5': (35.420,115.298,30.968)
O3': (36.951,111.904,33.033)
Image (generated by PyMOL):