Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A26:A662
Extra
PDB:
ATOM 1 O3' U A 25 46.798 120.267 43.773 1.00 37.34 O
ATOM 2 P C A 26 47.529 120.116 42.350 1.00 38.80 P
ATOM 3 OP1 C A 26 48.430 118.944 42.422 1.00 38.16 O
ATOM 4 OP2 C A 26 48.072 121.440 41.996 1.00 39.60 O
ATOM 5 O5' C A 26 46.338 119.763 41.361 1.00 39.89 O
ATOM 6 C5' C A 26 45.625 118.524 41.519 1.00 38.94 C
ATOM 7 C4' C A 26 44.485 118.442 40.542 1.00 39.10 C
ATOM 8 O4' C A 26 43.571 119.540 40.785 1.00 38.61 O
ATOM 9 C3' C A 26 44.835 118.609 39.075 1.00 39.59 C
ATOM 10 O3' C A 26 45.341 117.428 38.478 1.00 41.60 O
ATOM 11 C2' C A 26 43.495 119.001 38.490 1.00 39.27 C
ATOM 12 O2' C A 26 42.614 117.897 38.480 1.00 39.81 O
ATOM 13 C1' C A 26 43.000 119.963 39.559 1.00 39.29 C
ATOM 14 N1 C A 26 43.398 121.357 39.307 1.00 40.53 N
ATOM 15 C2 C A 26 42.558 122.168 38.530 1.00 42.21 C
ATOM 16 O2 C A 26 41.539 121.674 38.028 1.00 42.93 O
ATOM 17 N3 C A 26 42.877 123.471 38.350 1.00 43.57 N
ATOM 18 C4 C A 26 43.986 123.971 38.912 1.00 43.54 C
ATOM 19 N4 C A 26 44.241 125.282 38.752 1.00 43.91 N
ATOM 20 C5 C A 26 44.879 123.155 39.673 1.00 42.95 C
ATOM 21 C6 C A 26 44.551 121.869 39.839 1.00 42.67 C
ATOM 22 P A A 27 46.362 117.553 37.239 1.00 43.54 P
ATOM 23 OP1 A A 27 46.846 116.174 36.939 1.00 42.43 O
ATOM 24 OP2 A A 27 47.345 118.616 37.561 1.00 42.59 O
ATOM 25 O5' A A 27 45.466 118.121 36.042 1.00 43.91 O
TER
ATOM 1 O3' U B 661 34.895 116.044 28.872 1.00 58.26 O
ATOM 2 P A B 662 35.131 116.516 30.388 1.00 57.30 P
ATOM 3 OP1 A B 662 33.864 117.038 30.986 1.00 57.40 O
ATOM 4 OP2 A B 662 36.335 117.392 30.339 1.00 57.67 O
ATOM 5 O5' A B 662 35.505 115.159 31.127 1.00 56.47 O
ATOM 6 C5' A B 662 36.430 114.232 30.543 1.00 54.13 C
ATOM 7 C4' A B 662 37.250 113.581 31.628 1.00 52.50 C
ATOM 8 O4' A B 662 38.113 114.590 32.216 1.00 51.07 O
ATOM 9 C3' A B 662 36.462 112.963 32.786 1.00 52.11 C
ATOM 10 O3' A B 662 37.120 111.769 33.224 1.00 51.99 O
ATOM 11 C2' A B 662 36.519 114.055 33.854 1.00 51.20 C
ATOM 12 O2' A B 662 36.427 113.569 35.185 1.00 52.22 O
ATOM 13 C1' A B 662 37.906 114.632 33.610 1.00 51.59 C
ATOM 14 N9 A B 662 38.074 116.009 34.081 1.00 51.97 N
ATOM 15 C8 A B 662 37.317 117.128 33.804 1.00 51.71 C
ATOM 16 N7 A B 662 37.738 118.216 34.404 1.00 51.20 N
ATOM 17 C5 A B 662 38.849 117.791 35.119 1.00 52.16 C
ATOM 18 C6 A B 662 39.746 118.472 35.960 1.00 52.06 C
ATOM 19 N6 A B 662 39.681 119.774 36.213 1.00 51.51 N
ATOM 20 N1 A B 662 40.736 117.758 36.534 1.00 52.69 N
ATOM 21 C2 A B 662 40.827 116.445 36.261 1.00 53.62 C
ATOM 22 N3 A B 662 40.056 115.689 35.477 1.00 52.06 N
ATOM 23 C4 A B 662 39.068 116.432 34.931 1.00 52.57 C
ATOM 24 P U B 663 36.519 110.322 32.821 1.00 51.82 P
ATOM 25 OP1 U B 663 37.355 109.293 33.489 1.00 49.88 O
ATOM 26 OP2 U B 663 36.327 110.249 31.341 1.00 52.21 O
ATOM 27 O5' U B 663 35.086 110.291 33.522 1.00 49.12 O
TER
ATOM 2 P C A 26 47.529 120.116 42.350 1.00 38.80 P
ATOM 3 OP1 C A 26 48.430 118.944 42.422 1.00 38.16 O
ATOM 4 OP2 C A 26 48.072 121.440 41.996 1.00 39.60 O
ATOM 5 O5' C A 26 46.338 119.763 41.361 1.00 39.89 O
ATOM 6 C5' C A 26 45.625 118.524 41.519 1.00 38.94 C
ATOM 7 C4' C A 26 44.485 118.442 40.542 1.00 39.10 C
ATOM 8 O4' C A 26 43.571 119.540 40.785 1.00 38.61 O
ATOM 9 C3' C A 26 44.835 118.609 39.075 1.00 39.59 C
ATOM 10 O3' C A 26 45.341 117.428 38.478 1.00 41.60 O
ATOM 11 C2' C A 26 43.495 119.001 38.490 1.00 39.27 C
ATOM 12 O2' C A 26 42.614 117.897 38.480 1.00 39.81 O
ATOM 13 C1' C A 26 43.000 119.963 39.559 1.00 39.29 C
ATOM 14 N1 C A 26 43.398 121.357 39.307 1.00 40.53 N
ATOM 15 C2 C A 26 42.558 122.168 38.530 1.00 42.21 C
ATOM 16 O2 C A 26 41.539 121.674 38.028 1.00 42.93 O
ATOM 17 N3 C A 26 42.877 123.471 38.350 1.00 43.57 N
ATOM 18 C4 C A 26 43.986 123.971 38.912 1.00 43.54 C
ATOM 19 N4 C A 26 44.241 125.282 38.752 1.00 43.91 N
ATOM 20 C5 C A 26 44.879 123.155 39.673 1.00 42.95 C
ATOM 21 C6 C A 26 44.551 121.869 39.839 1.00 42.67 C
ATOM 22 P A A 27 46.362 117.553 37.239 1.00 43.54 P
ATOM 23 OP1 A A 27 46.846 116.174 36.939 1.00 42.43 O
ATOM 24 OP2 A A 27 47.345 118.616 37.561 1.00 42.59 O
ATOM 25 O5' A A 27 45.466 118.121 36.042 1.00 43.91 O
TER
ATOM 1 O3' U B 661 34.895 116.044 28.872 1.00 58.26 O
ATOM 2 P A B 662 35.131 116.516 30.388 1.00 57.30 P
ATOM 3 OP1 A B 662 33.864 117.038 30.986 1.00 57.40 O
ATOM 4 OP2 A B 662 36.335 117.392 30.339 1.00 57.67 O
ATOM 5 O5' A B 662 35.505 115.159 31.127 1.00 56.47 O
ATOM 6 C5' A B 662 36.430 114.232 30.543 1.00 54.13 C
ATOM 7 C4' A B 662 37.250 113.581 31.628 1.00 52.50 C
ATOM 8 O4' A B 662 38.113 114.590 32.216 1.00 51.07 O
ATOM 9 C3' A B 662 36.462 112.963 32.786 1.00 52.11 C
ATOM 10 O3' A B 662 37.120 111.769 33.224 1.00 51.99 O
ATOM 11 C2' A B 662 36.519 114.055 33.854 1.00 51.20 C
ATOM 12 O2' A B 662 36.427 113.569 35.185 1.00 52.22 O
ATOM 13 C1' A B 662 37.906 114.632 33.610 1.00 51.59 C
ATOM 14 N9 A B 662 38.074 116.009 34.081 1.00 51.97 N
ATOM 15 C8 A B 662 37.317 117.128 33.804 1.00 51.71 C
ATOM 16 N7 A B 662 37.738 118.216 34.404 1.00 51.20 N
ATOM 17 C5 A B 662 38.849 117.791 35.119 1.00 52.16 C
ATOM 18 C6 A B 662 39.746 118.472 35.960 1.00 52.06 C
ATOM 19 N6 A B 662 39.681 119.774 36.213 1.00 51.51 N
ATOM 20 N1 A B 662 40.736 117.758 36.534 1.00 52.69 N
ATOM 21 C2 A B 662 40.827 116.445 36.261 1.00 53.62 C
ATOM 22 N3 A B 662 40.056 115.689 35.477 1.00 52.06 N
ATOM 23 C4 A B 662 39.068 116.432 34.931 1.00 52.57 C
ATOM 24 P U B 663 36.519 110.322 32.821 1.00 51.82 P
ATOM 25 OP1 U B 663 37.355 109.293 33.489 1.00 49.88 O
ATOM 26 OP2 U B 663 36.327 110.249 31.341 1.00 52.21 O
ATOM 27 O5' U B 663 35.086 110.291 33.522 1.00 49.12 O
TER
Atoms:
C2: (42.558,122.168,38.530)
OP1: (48.430,118.944,42.422)
OP2: (48.072,121.440,41.996)
C4: (43.986,123.971,38.912)
O5': (46.338,119.763,41.361)
C3': (44.835,118.609,39.075)
C1': (43.000,119.963,39.559)
O4': (43.571,119.540,40.785)
C5': (45.625,118.524,41.519)
P: (47.529,120.116,42.350)
O2: (41.539,121.674,38.028)
C4': (44.485,118.442,40.542)
C2': (43.495,119.001,38.490)
O2': (42.614,117.897,38.480)
N1: (43.398,121.357,39.307)
N3: (42.877,123.471,38.350)
N4: (44.241,125.282,38.752)
C6: (44.551,121.869,39.839)
C5: (44.879,123.155,39.673)
O3': (45.341,117.428,38.478)
OP1: (48.430,118.944,42.422)
OP2: (48.072,121.440,41.996)
C4: (43.986,123.971,38.912)
O5': (46.338,119.763,41.361)
C3': (44.835,118.609,39.075)
C1': (43.000,119.963,39.559)
O4': (43.571,119.540,40.785)
C5': (45.625,118.524,41.519)
P: (47.529,120.116,42.350)
O2: (41.539,121.674,38.028)
C4': (44.485,118.442,40.542)
C2': (43.495,119.001,38.490)
O2': (42.614,117.897,38.480)
N1: (43.398,121.357,39.307)
N3: (42.877,123.471,38.350)
N4: (44.241,125.282,38.752)
C6: (44.551,121.869,39.839)
C5: (44.879,123.155,39.673)
O3': (45.341,117.428,38.478)
OP1: (33.864,117.038,30.986)
OP2: (36.335,117.392,30.339)
C3': (36.462,112.963,32.786)
C1': (37.906,114.632,33.610)
C5': (36.430,114.232,30.543)
O4': (38.113,114.590,32.216)
C8: (37.317,117.128,33.804)
O2': (36.427,113.569,35.185)
C6: (39.746,118.472,35.960)
C5: (38.849,117.791,35.119)
C4: (39.068,116.432,34.931)
P: (35.131,116.516,30.388)
C4': (37.250,113.581,31.628)
C2': (36.519,114.055,33.854)
C2: (40.827,116.445,36.261)
N1: (40.736,117.758,36.534)
N3: (40.056,115.689,35.477)
N6: (39.681,119.774,36.213)
N7: (37.738,118.216,34.404)
N9: (38.074,116.009,34.081)
O5': (35.505,115.159,31.127)
O3': (37.120,111.769,33.224)
OP2: (36.335,117.392,30.339)
C3': (36.462,112.963,32.786)
C1': (37.906,114.632,33.610)
C5': (36.430,114.232,30.543)
O4': (38.113,114.590,32.216)
C8: (37.317,117.128,33.804)
O2': (36.427,113.569,35.185)
C6: (39.746,118.472,35.960)
C5: (38.849,117.791,35.119)
C4: (39.068,116.432,34.931)
P: (35.131,116.516,30.388)
C4': (37.250,113.581,31.628)
C2': (36.519,114.055,33.854)
C2: (40.827,116.445,36.261)
N1: (40.736,117.758,36.534)
N3: (40.056,115.689,35.477)
N6: (39.681,119.774,36.213)
N7: (37.738,118.216,34.404)
N9: (38.074,116.009,34.081)
O5': (35.505,115.159,31.127)
O3': (37.120,111.769,33.224)
Image (generated by PyMOL):