Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:026:0662
Extra
PDB:
ATOM 1 O3' U A 25 46.929 120.534 43.729 1.00 40.55 O
ATOM 2 P C A 26 47.618 120.423 42.285 1.00 42.15 P
ATOM 3 OP1 C A 26 48.647 119.342 42.326 1.00 38.01 O
ATOM 4 OP2 C A 26 48.005 121.797 41.886 1.00 40.41 O
ATOM 5 O5' C A 26 46.423 120.006 41.315 1.00 43.32 O
ATOM 6 C5' C A 26 45.792 118.719 41.405 1.00 43.18 C
ATOM 7 C4' C A 26 44.648 118.642 40.429 1.00 46.01 C
ATOM 8 O4' C A 26 43.719 119.717 40.720 1.00 47.75 O
ATOM 9 C3' C A 26 44.996 118.881 38.969 1.00 48.00 C
ATOM 10 O3' C A 26 45.484 117.718 38.332 1.00 50.44 O
ATOM 11 C2' C A 26 43.657 119.298 38.396 1.00 48.04 C
ATOM 12 O2' C A 26 42.775 118.203 38.291 1.00 49.78 O
ATOM 13 C1' C A 26 43.141 120.192 39.513 1.00 47.98 C
ATOM 14 N1 C A 26 43.535 121.596 39.315 1.00 48.79 N
ATOM 15 C2 C A 26 42.727 122.404 38.521 1.00 48.98 C
ATOM 16 O2 C A 26 41.723 121.909 37.993 1.00 48.81 O
ATOM 17 N3 C A 26 43.055 123.706 38.346 1.00 48.95 N
ATOM 18 C4 C A 26 44.143 124.203 38.934 1.00 48.50 C
ATOM 19 N4 C A 26 44.410 125.496 38.757 1.00 47.91 N
ATOM 20 C5 C A 26 44.998 123.397 39.736 1.00 50.12 C
ATOM 21 C6 C A 26 44.662 122.110 39.898 1.00 50.22 C
ATOM 22 P A A 27 46.486 117.866 37.089 1.00 51.79 P
ATOM 23 OP1 A A 27 46.869 116.485 36.710 1.00 50.86 O
ATOM 24 OP2 A A 27 47.544 118.852 37.448 1.00 49.72 O
ATOM 25 O5' A A 27 45.576 118.485 35.933 1.00 51.85 O
TER
ATOM 1 O3' U B 661 34.748 116.093 28.907 1.00 62.74 O
ATOM 2 P A B 662 35.147 116.819 30.293 1.00 62.02 P
ATOM 3 OP1 A B 662 33.938 117.262 31.044 1.00 62.23 O
ATOM 4 OP2 A B 662 36.211 117.807 29.976 1.00 61.28 O
ATOM 5 O5' A B 662 35.813 115.644 31.128 1.00 58.78 O
ATOM 6 C5' A B 662 36.613 114.646 30.481 1.00 57.43 C
ATOM 7 C4' A B 662 37.423 113.902 31.506 1.00 57.27 C
ATOM 8 O4' A B 662 38.290 114.856 32.169 1.00 57.89 O
ATOM 9 C3' A B 662 36.610 113.232 32.610 1.00 58.03 C
ATOM 10 O3' A B 662 37.302 112.083 33.060 1.00 59.08 O
ATOM 11 C2' A B 662 36.607 114.281 33.712 1.00 57.74 C
ATOM 12 O2' A B 662 36.484 113.719 35.000 1.00 57.07 O
ATOM 13 C1' A B 662 37.999 114.881 33.552 1.00 58.75 C
ATOM 14 N9 A B 662 38.108 116.259 34.034 1.00 58.66 N
ATOM 15 C8 A B 662 37.308 117.344 33.753 1.00 57.87 C
ATOM 16 N7 A B 662 37.685 118.446 34.353 1.00 58.00 N
ATOM 17 C5 A B 662 38.808 118.064 35.076 1.00 58.62 C
ATOM 18 C6 A B 662 39.679 118.776 35.919 1.00 58.51 C
ATOM 19 N6 A B 662 39.556 120.077 36.181 1.00 59.47 N
ATOM 20 N1 A B 662 40.696 118.096 36.489 1.00 57.58 N
ATOM 21 C2 A B 662 40.825 116.787 36.220 1.00 57.55 C
ATOM 22 N3 A B 662 40.078 116.009 35.443 1.00 56.69 N
ATOM 23 C4 A B 662 39.075 116.719 34.892 1.00 58.21 C
ATOM 24 P U B 663 36.680 110.631 32.803 1.00 59.52 P
ATOM 25 OP1 U B 663 37.519 109.684 33.580 1.00 59.88 O
ATOM 26 OP2 U B 663 36.545 110.452 31.331 1.00 60.98 O
ATOM 27 O5' U B 663 35.230 110.708 33.457 1.00 54.58 O
TER
ATOM 2 P C A 26 47.618 120.423 42.285 1.00 42.15 P
ATOM 3 OP1 C A 26 48.647 119.342 42.326 1.00 38.01 O
ATOM 4 OP2 C A 26 48.005 121.797 41.886 1.00 40.41 O
ATOM 5 O5' C A 26 46.423 120.006 41.315 1.00 43.32 O
ATOM 6 C5' C A 26 45.792 118.719 41.405 1.00 43.18 C
ATOM 7 C4' C A 26 44.648 118.642 40.429 1.00 46.01 C
ATOM 8 O4' C A 26 43.719 119.717 40.720 1.00 47.75 O
ATOM 9 C3' C A 26 44.996 118.881 38.969 1.00 48.00 C
ATOM 10 O3' C A 26 45.484 117.718 38.332 1.00 50.44 O
ATOM 11 C2' C A 26 43.657 119.298 38.396 1.00 48.04 C
ATOM 12 O2' C A 26 42.775 118.203 38.291 1.00 49.78 O
ATOM 13 C1' C A 26 43.141 120.192 39.513 1.00 47.98 C
ATOM 14 N1 C A 26 43.535 121.596 39.315 1.00 48.79 N
ATOM 15 C2 C A 26 42.727 122.404 38.521 1.00 48.98 C
ATOM 16 O2 C A 26 41.723 121.909 37.993 1.00 48.81 O
ATOM 17 N3 C A 26 43.055 123.706 38.346 1.00 48.95 N
ATOM 18 C4 C A 26 44.143 124.203 38.934 1.00 48.50 C
ATOM 19 N4 C A 26 44.410 125.496 38.757 1.00 47.91 N
ATOM 20 C5 C A 26 44.998 123.397 39.736 1.00 50.12 C
ATOM 21 C6 C A 26 44.662 122.110 39.898 1.00 50.22 C
ATOM 22 P A A 27 46.486 117.866 37.089 1.00 51.79 P
ATOM 23 OP1 A A 27 46.869 116.485 36.710 1.00 50.86 O
ATOM 24 OP2 A A 27 47.544 118.852 37.448 1.00 49.72 O
ATOM 25 O5' A A 27 45.576 118.485 35.933 1.00 51.85 O
TER
ATOM 1 O3' U B 661 34.748 116.093 28.907 1.00 62.74 O
ATOM 2 P A B 662 35.147 116.819 30.293 1.00 62.02 P
ATOM 3 OP1 A B 662 33.938 117.262 31.044 1.00 62.23 O
ATOM 4 OP2 A B 662 36.211 117.807 29.976 1.00 61.28 O
ATOM 5 O5' A B 662 35.813 115.644 31.128 1.00 58.78 O
ATOM 6 C5' A B 662 36.613 114.646 30.481 1.00 57.43 C
ATOM 7 C4' A B 662 37.423 113.902 31.506 1.00 57.27 C
ATOM 8 O4' A B 662 38.290 114.856 32.169 1.00 57.89 O
ATOM 9 C3' A B 662 36.610 113.232 32.610 1.00 58.03 C
ATOM 10 O3' A B 662 37.302 112.083 33.060 1.00 59.08 O
ATOM 11 C2' A B 662 36.607 114.281 33.712 1.00 57.74 C
ATOM 12 O2' A B 662 36.484 113.719 35.000 1.00 57.07 O
ATOM 13 C1' A B 662 37.999 114.881 33.552 1.00 58.75 C
ATOM 14 N9 A B 662 38.108 116.259 34.034 1.00 58.66 N
ATOM 15 C8 A B 662 37.308 117.344 33.753 1.00 57.87 C
ATOM 16 N7 A B 662 37.685 118.446 34.353 1.00 58.00 N
ATOM 17 C5 A B 662 38.808 118.064 35.076 1.00 58.62 C
ATOM 18 C6 A B 662 39.679 118.776 35.919 1.00 58.51 C
ATOM 19 N6 A B 662 39.556 120.077 36.181 1.00 59.47 N
ATOM 20 N1 A B 662 40.696 118.096 36.489 1.00 57.58 N
ATOM 21 C2 A B 662 40.825 116.787 36.220 1.00 57.55 C
ATOM 22 N3 A B 662 40.078 116.009 35.443 1.00 56.69 N
ATOM 23 C4 A B 662 39.075 116.719 34.892 1.00 58.21 C
ATOM 24 P U B 663 36.680 110.631 32.803 1.00 59.52 P
ATOM 25 OP1 U B 663 37.519 109.684 33.580 1.00 59.88 O
ATOM 26 OP2 U B 663 36.545 110.452 31.331 1.00 60.98 O
ATOM 27 O5' U B 663 35.230 110.708 33.457 1.00 54.58 O
TER
Atoms:
C2: (42.727,122.404,38.521)
OP1: (48.647,119.342,42.326)
OP2: (48.005,121.797,41.886)
C4: (44.143,124.203,38.934)
O5': (46.423,120.006,41.315)
C3': (44.996,118.881,38.969)
C1': (43.141,120.192,39.513)
O4': (43.719,119.717,40.720)
C5': (45.792,118.719,41.405)
P: (47.618,120.423,42.285)
O2: (41.723,121.909,37.993)
C4': (44.648,118.642,40.429)
C2': (43.657,119.298,38.396)
O2': (42.775,118.203,38.291)
N1: (43.535,121.596,39.315)
N3: (43.055,123.706,38.346)
N4: (44.410,125.496,38.757)
C6: (44.662,122.110,39.898)
C5: (44.998,123.397,39.736)
O3': (45.484,117.718,38.332)
OP1: (48.647,119.342,42.326)
OP2: (48.005,121.797,41.886)
C4: (44.143,124.203,38.934)
O5': (46.423,120.006,41.315)
C3': (44.996,118.881,38.969)
C1': (43.141,120.192,39.513)
O4': (43.719,119.717,40.720)
C5': (45.792,118.719,41.405)
P: (47.618,120.423,42.285)
O2: (41.723,121.909,37.993)
C4': (44.648,118.642,40.429)
C2': (43.657,119.298,38.396)
O2': (42.775,118.203,38.291)
N1: (43.535,121.596,39.315)
N3: (43.055,123.706,38.346)
N4: (44.410,125.496,38.757)
C6: (44.662,122.110,39.898)
C5: (44.998,123.397,39.736)
O3': (45.484,117.718,38.332)
OP1: (33.938,117.262,31.044)
OP2: (36.211,117.807,29.976)
C3': (36.610,113.232,32.610)
C1': (37.999,114.881,33.552)
C5': (36.613,114.646,30.481)
O4': (38.290,114.856,32.169)
C8: (37.308,117.344,33.753)
O2': (36.484,113.719,35.000)
C6: (39.679,118.776,35.919)
C5: (38.808,118.064,35.076)
C4: (39.075,116.719,34.892)
P: (35.147,116.819,30.293)
C4': (37.423,113.902,31.506)
C2': (36.607,114.281,33.712)
C2: (40.825,116.787,36.220)
N1: (40.696,118.096,36.489)
N3: (40.078,116.009,35.443)
N6: (39.556,120.077,36.181)
N7: (37.685,118.446,34.353)
N9: (38.108,116.259,34.034)
O5': (35.813,115.644,31.128)
O3': (37.302,112.083,33.060)
OP2: (36.211,117.807,29.976)
C3': (36.610,113.232,32.610)
C1': (37.999,114.881,33.552)
C5': (36.613,114.646,30.481)
O4': (38.290,114.856,32.169)
C8: (37.308,117.344,33.753)
O2': (36.484,113.719,35.000)
C6: (39.679,118.776,35.919)
C5: (38.808,118.064,35.076)
C4: (39.075,116.719,34.892)
P: (35.147,116.819,30.293)
C4': (37.423,113.902,31.506)
C2': (36.607,114.281,33.712)
C2: (40.825,116.787,36.220)
N1: (40.696,118.096,36.489)
N3: (40.078,116.009,35.443)
N6: (39.556,120.077,36.181)
N7: (37.685,118.446,34.353)
N9: (38.108,116.259,34.034)
O5': (35.813,115.644,31.128)
O3': (37.302,112.083,33.060)
Image (generated by PyMOL):