Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:427:1635
Extra
PDB:
ATOM 1 O3' U A 26 70.395 -15.926 99.676 1.00 37.46 O
ATOM 2 P C A 27 70.562 -16.829 100.962 1.00 39.45 P
ATOM 3 OP1 C A 27 69.739 -18.006 100.751 1.00 39.32 O
ATOM 4 OP2 C A 27 70.303 -15.964 102.157 1.00 39.58 O
ATOM 5 O5' C A 27 72.057 -17.262 100.923 1.00 39.86 O
ATOM 6 C5' C A 27 72.404 -18.490 100.348 1.00 39.96 C
ATOM 7 C4' C A 27 73.845 -18.787 100.563 1.00 40.43 C
ATOM 8 O4' C A 27 74.637 -17.585 100.370 1.00 40.49 O
ATOM 9 C3' C A 27 74.207 -19.209 101.952 1.00 40.86 C
ATOM 10 O3' C A 27 73.839 -20.547 102.209 1.00 40.97 O
ATOM 11 C2' C A 27 75.705 -18.952 101.965 1.00 41.27 C
ATOM 12 O2' C A 27 76.364 -19.940 101.217 1.00 41.42 O
ATOM 13 C1' C A 27 75.786 -17.647 101.189 1.00 41.00 C
ATOM 14 N1 C A 27 75.773 -16.479 102.066 1.00 41.09 N
ATOM 15 C2 C A 27 76.865 -16.093 102.843 1.00 41.57 C
ATOM 16 O2 C A 27 77.888 -16.785 102.827 1.00 41.94 O
ATOM 17 N3 C A 27 76.810 -15.008 103.618 1.00 41.66 N
ATOM 18 C4 C A 27 75.725 -14.317 103.601 1.00 41.29 C
ATOM 19 N4 C A 27 75.662 -13.257 104.355 1.00 41.40 N
ATOM 20 C5 C A 27 74.615 -14.665 102.806 1.00 40.79 C
ATOM 21 C6 C A 27 74.651 -15.744 102.042 1.00 40.70 C
ATOM 22 P U A 28 73.519 -21.016 103.694 1.00 39.79 P
ATOM 23 OP1 U A 28 73.028 -22.385 103.586 1.00 39.80 O
ATOM 24 OP2 U A 28 72.665 -19.982 104.342 1.00 39.59 O
ATOM 25 O5' U A 28 74.943 -21.019 104.371 1.00 40.34 O
TER
ATOM 1 O3' A B 634 88.197 -23.067 103.073 1.00 51.50 O
ATOM 2 P A B 635 87.595 -22.714 101.606 1.00 44.14 P
ATOM 3 OP1 A B 635 88.679 -22.769 100.585 1.00 44.15 O
ATOM 4 OP2 A B 635 86.863 -21.455 101.748 1.00 43.89 O
ATOM 5 O5' A B 635 86.606 -23.938 101.371 1.00 43.97 O
ATOM 6 C5' A B 635 85.807 -24.429 102.404 1.00 44.10 C
ATOM 7 C4' A B 635 84.569 -25.090 101.870 1.00 43.74 C
ATOM 8 O4' A B 635 83.408 -24.336 102.308 1.00 43.52 O
ATOM 9 C3' A B 635 84.462 -25.170 100.364 1.00 43.35 C
ATOM 10 O3' A B 635 83.695 -26.320 100.023 1.00 43.22 O
ATOM 11 C2' A B 635 83.672 -23.912 100.044 1.00 42.97 C
ATOM 12 O2' A B 635 83.003 -23.933 98.821 1.00 42.53 O
ATOM 13 C1' A B 635 82.696 -23.858 101.200 1.00 43.04 C
ATOM 14 N9 A B 635 82.241 -22.520 101.528 1.00 42.90 N
ATOM 15 C8 A B 635 82.978 -21.481 102.046 1.00 43.10 C
ATOM 16 N7 A B 635 82.302 -20.369 102.269 1.00 42.93 N
ATOM 17 C5 A B 635 81.008 -20.733 101.873 1.00 42.58 C
ATOM 18 C6 A B 635 79.778 -20.052 101.848 1.00 42.27 C
ATOM 19 N6 A B 635 79.577 -18.806 102.232 1.00 42.25 N
ATOM 20 N1 A B 635 78.700 -20.725 101.439 1.00 42.01 N
ATOM 21 C2 A B 635 78.817 -21.993 101.038 1.00 42.03 C
ATOM 22 N3 A B 635 79.933 -22.735 100.999 1.00 42.31 N
ATOM 23 C4 A B 635 80.984 -22.051 101.440 1.00 42.57 C
ATOM 24 P A B 636 84.439 -27.687 99.613 1.00 44.92 P
ATOM 25 OP1 A B 636 83.439 -28.583 98.960 1.00 44.65 O
ATOM 26 OP2 A B 636 85.162 -28.183 100.789 1.00 45.43 O
ATOM 27 O5' A B 636 85.455 -27.178 98.542 1.00 44.83 O
TER
ATOM 2 P C A 27 70.562 -16.829 100.962 1.00 39.45 P
ATOM 3 OP1 C A 27 69.739 -18.006 100.751 1.00 39.32 O
ATOM 4 OP2 C A 27 70.303 -15.964 102.157 1.00 39.58 O
ATOM 5 O5' C A 27 72.057 -17.262 100.923 1.00 39.86 O
ATOM 6 C5' C A 27 72.404 -18.490 100.348 1.00 39.96 C
ATOM 7 C4' C A 27 73.845 -18.787 100.563 1.00 40.43 C
ATOM 8 O4' C A 27 74.637 -17.585 100.370 1.00 40.49 O
ATOM 9 C3' C A 27 74.207 -19.209 101.952 1.00 40.86 C
ATOM 10 O3' C A 27 73.839 -20.547 102.209 1.00 40.97 O
ATOM 11 C2' C A 27 75.705 -18.952 101.965 1.00 41.27 C
ATOM 12 O2' C A 27 76.364 -19.940 101.217 1.00 41.42 O
ATOM 13 C1' C A 27 75.786 -17.647 101.189 1.00 41.00 C
ATOM 14 N1 C A 27 75.773 -16.479 102.066 1.00 41.09 N
ATOM 15 C2 C A 27 76.865 -16.093 102.843 1.00 41.57 C
ATOM 16 O2 C A 27 77.888 -16.785 102.827 1.00 41.94 O
ATOM 17 N3 C A 27 76.810 -15.008 103.618 1.00 41.66 N
ATOM 18 C4 C A 27 75.725 -14.317 103.601 1.00 41.29 C
ATOM 19 N4 C A 27 75.662 -13.257 104.355 1.00 41.40 N
ATOM 20 C5 C A 27 74.615 -14.665 102.806 1.00 40.79 C
ATOM 21 C6 C A 27 74.651 -15.744 102.042 1.00 40.70 C
ATOM 22 P U A 28 73.519 -21.016 103.694 1.00 39.79 P
ATOM 23 OP1 U A 28 73.028 -22.385 103.586 1.00 39.80 O
ATOM 24 OP2 U A 28 72.665 -19.982 104.342 1.00 39.59 O
ATOM 25 O5' U A 28 74.943 -21.019 104.371 1.00 40.34 O
TER
ATOM 1 O3' A B 634 88.197 -23.067 103.073 1.00 51.50 O
ATOM 2 P A B 635 87.595 -22.714 101.606 1.00 44.14 P
ATOM 3 OP1 A B 635 88.679 -22.769 100.585 1.00 44.15 O
ATOM 4 OP2 A B 635 86.863 -21.455 101.748 1.00 43.89 O
ATOM 5 O5' A B 635 86.606 -23.938 101.371 1.00 43.97 O
ATOM 6 C5' A B 635 85.807 -24.429 102.404 1.00 44.10 C
ATOM 7 C4' A B 635 84.569 -25.090 101.870 1.00 43.74 C
ATOM 8 O4' A B 635 83.408 -24.336 102.308 1.00 43.52 O
ATOM 9 C3' A B 635 84.462 -25.170 100.364 1.00 43.35 C
ATOM 10 O3' A B 635 83.695 -26.320 100.023 1.00 43.22 O
ATOM 11 C2' A B 635 83.672 -23.912 100.044 1.00 42.97 C
ATOM 12 O2' A B 635 83.003 -23.933 98.821 1.00 42.53 O
ATOM 13 C1' A B 635 82.696 -23.858 101.200 1.00 43.04 C
ATOM 14 N9 A B 635 82.241 -22.520 101.528 1.00 42.90 N
ATOM 15 C8 A B 635 82.978 -21.481 102.046 1.00 43.10 C
ATOM 16 N7 A B 635 82.302 -20.369 102.269 1.00 42.93 N
ATOM 17 C5 A B 635 81.008 -20.733 101.873 1.00 42.58 C
ATOM 18 C6 A B 635 79.778 -20.052 101.848 1.00 42.27 C
ATOM 19 N6 A B 635 79.577 -18.806 102.232 1.00 42.25 N
ATOM 20 N1 A B 635 78.700 -20.725 101.439 1.00 42.01 N
ATOM 21 C2 A B 635 78.817 -21.993 101.038 1.00 42.03 C
ATOM 22 N3 A B 635 79.933 -22.735 100.999 1.00 42.31 N
ATOM 23 C4 A B 635 80.984 -22.051 101.440 1.00 42.57 C
ATOM 24 P A B 636 84.439 -27.687 99.613 1.00 44.92 P
ATOM 25 OP1 A B 636 83.439 -28.583 98.960 1.00 44.65 O
ATOM 26 OP2 A B 636 85.162 -28.183 100.789 1.00 45.43 O
ATOM 27 O5' A B 636 85.455 -27.178 98.542 1.00 44.83 O
TER
Atoms:
C2: (76.865,-16.093,102.843)
OP1: (69.739,-18.006,100.751)
OP2: (70.303,-15.964,102.157)
C4: (75.725,-14.317,103.601)
O5': (72.057,-17.262,100.923)
C3': (74.207,-19.209,101.952)
C1': (75.786,-17.647,101.189)
O4': (74.637,-17.585,100.370)
C5': (72.404,-18.490,100.348)
P: (70.562,-16.829,100.962)
O2: (77.888,-16.785,102.827)
C4': (73.845,-18.787,100.563)
C2': (75.705,-18.952,101.965)
O2': (76.364,-19.940,101.217)
N1: (75.773,-16.479,102.066)
N3: (76.810,-15.008,103.618)
N4: (75.662,-13.257,104.355)
C6: (74.651,-15.744,102.042)
C5: (74.615,-14.665,102.806)
O3': (73.839,-20.547,102.209)
OP1: (69.739,-18.006,100.751)
OP2: (70.303,-15.964,102.157)
C4: (75.725,-14.317,103.601)
O5': (72.057,-17.262,100.923)
C3': (74.207,-19.209,101.952)
C1': (75.786,-17.647,101.189)
O4': (74.637,-17.585,100.370)
C5': (72.404,-18.490,100.348)
P: (70.562,-16.829,100.962)
O2: (77.888,-16.785,102.827)
C4': (73.845,-18.787,100.563)
C2': (75.705,-18.952,101.965)
O2': (76.364,-19.940,101.217)
N1: (75.773,-16.479,102.066)
N3: (76.810,-15.008,103.618)
N4: (75.662,-13.257,104.355)
C6: (74.651,-15.744,102.042)
C5: (74.615,-14.665,102.806)
O3': (73.839,-20.547,102.209)
OP1: (88.679,-22.769,100.585)
OP2: (86.863,-21.455,101.748)
C3': (84.462,-25.170,100.364)
C1': (82.696,-23.858,101.200)
C5': (85.807,-24.429,102.404)
O4': (83.408,-24.336,102.308)
C8: (82.978,-21.481,102.046)
O2': (83.003,-23.933,98.821)
C6: (79.778,-20.052,101.848)
C5: (81.008,-20.733,101.873)
C4: (80.984,-22.051,101.440)
P: (87.595,-22.714,101.606)
C4': (84.569,-25.090,101.870)
C2': (83.672,-23.912,100.044)
C2: (78.817,-21.993,101.038)
N1: (78.700,-20.725,101.439)
N3: (79.933,-22.735,100.999)
N6: (79.577,-18.806,102.232)
N7: (82.302,-20.369,102.269)
N9: (82.241,-22.520,101.528)
O5': (86.606,-23.938,101.371)
O3': (83.695,-26.320,100.023)
OP2: (86.863,-21.455,101.748)
C3': (84.462,-25.170,100.364)
C1': (82.696,-23.858,101.200)
C5': (85.807,-24.429,102.404)
O4': (83.408,-24.336,102.308)
C8: (82.978,-21.481,102.046)
O2': (83.003,-23.933,98.821)
C6: (79.778,-20.052,101.848)
C5: (81.008,-20.733,101.873)
C4: (80.984,-22.051,101.440)
P: (87.595,-22.714,101.606)
C4': (84.569,-25.090,101.870)
C2': (83.672,-23.912,100.044)
C2: (78.817,-21.993,101.038)
N1: (78.700,-20.725,101.439)
N3: (79.933,-22.735,100.999)
N6: (79.577,-18.806,102.232)
N7: (82.302,-20.369,102.269)
N9: (82.241,-22.520,101.528)
O5': (86.606,-23.938,101.371)
O3': (83.695,-26.320,100.023)
Image (generated by PyMOL):