Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:327:354
Extra
PDB:
ATOM 1 O3' A A 26 11.993 -88.763 21.809 1.00 74.46 O
ATOM 2 P C A 27 11.145 -89.526 22.948 1.00 61.95 P
ATOM 3 OP1 C A 27 11.180 -88.670 24.169 1.00 60.77 O
ATOM 4 OP2 C A 27 11.649 -90.906 23.049 1.00 62.48 O
ATOM 5 O5' C A 27 9.697 -89.503 22.317 1.00 62.66 O
ATOM 6 C5' C A 27 9.233 -88.336 21.667 1.00 62.57 C
ATOM 7 C4' C A 27 8.367 -88.664 20.490 1.00 63.66 C
ATOM 8 O4' C A 27 9.157 -89.284 19.446 1.00 64.43 O
ATOM 9 C3' C A 27 7.245 -89.661 20.741 1.00 64.30 C
ATOM 10 O3' C A 27 6.124 -89.068 21.356 1.00 63.90 O
ATOM 11 C2' C A 27 6.965 -90.166 19.343 1.00 65.49 C
ATOM 12 O2' C A 27 6.291 -89.168 18.600 1.00 65.59 O
ATOM 13 C1' C A 27 8.380 -90.279 18.797 1.00 65.54 C
ATOM 14 N1 C A 27 8.984 -91.614 19.075 1.00 65.93 N
ATOM 15 C2 C A 27 8.673 -92.707 18.281 1.00 67.09 C
ATOM 16 O2 C A 27 7.868 -92.476 17.384 1.00 67.72 O
ATOM 17 N3 C A 27 9.239 -93.925 18.530 1.00 67.46 N
ATOM 18 C4 C A 27 10.129 -94.053 19.551 1.00 66.68 C
ATOM 19 N4 C A 27 10.746 -95.207 19.867 1.00 66.97 N
ATOM 20 C5 C A 27 10.454 -92.951 20.371 1.00 65.49 C
ATOM 21 C6 C A 27 9.872 -91.778 20.096 1.00 65.17 C
ATOM 22 P C A 28 5.121 -89.941 22.256 1.00 74.62 P
ATOM 23 OP1 C A 28 3.749 -89.403 22.017 1.00 74.84 O
ATOM 24 OP2 C A 28 5.668 -89.955 23.657 1.00 73.66 O
ATOM 25 O5' C A 28 5.235 -91.383 21.607 1.00 75.74 O
TER
ATOM 1 O3' U B 53 8.861 -88.235 8.071 1.00 90.91 O
ATOM 2 P A B 54 7.616 -87.592 7.295 1.00 86.22 P
ATOM 3 OP1 A B 54 7.317 -88.454 6.149 1.00 87.52 O
ATOM 4 OP2 A B 54 7.929 -86.162 7.047 1.00 85.57 O
ATOM 5 O5' A B 54 6.462 -87.703 8.366 1.00 85.81 O
ATOM 6 C5' A B 54 5.188 -87.137 8.115 1.00 85.97 C
ATOM 7 C4' A B 54 4.713 -86.333 9.286 1.00 84.89 C
ATOM 8 O4' A B 54 4.169 -87.212 10.299 1.00 84.81 O
ATOM 9 C3' A B 54 5.784 -85.549 10.004 1.00 83.77 C
ATOM 10 O3' A B 54 6.053 -84.322 9.364 1.00 83.50 O
ATOM 11 C2' A B 54 5.192 -85.394 11.391 1.00 82.92 C
ATOM 12 O2' A B 54 4.165 -84.410 11.377 1.00 82.68 O
ATOM 13 C1' A B 54 4.536 -86.752 11.576 1.00 83.66 C
ATOM 14 N9 A B 54 5.445 -87.750 12.172 1.00 83.58 N
ATOM 15 C8 A B 54 6.096 -88.736 11.484 1.00 84.39 C
ATOM 16 N7 A B 54 6.808 -89.533 12.236 1.00 84.15 N
ATOM 17 C5 A B 54 6.610 -89.055 13.517 1.00 83.12 C
ATOM 18 C6 A B 54 7.100 -89.480 14.764 1.00 82.43 C
ATOM 19 N6 A B 54 7.923 -90.516 14.960 1.00 82.66 N
ATOM 20 N1 A B 54 6.700 -88.780 15.839 1.00 81.48 N
ATOM 21 C2 A B 54 5.876 -87.742 15.657 1.00 81.25 C
ATOM 22 N3 A B 54 5.349 -87.253 14.540 1.00 81.83 N
ATOM 23 C4 A B 54 5.760 -87.964 13.490 1.00 82.76 C
ATOM 24 P A B 55 7.460 -83.575 9.566 1.00 81.67 P
ATOM 25 OP1 A B 55 7.301 -82.228 8.949 1.00 81.45 O
ATOM 26 OP2 A B 55 8.528 -84.485 9.043 1.00 82.24 O
ATOM 27 O5' A B 55 7.583 -83.438 11.164 1.00 80.54 O
TER
ATOM 2 P C A 27 11.145 -89.526 22.948 1.00 61.95 P
ATOM 3 OP1 C A 27 11.180 -88.670 24.169 1.00 60.77 O
ATOM 4 OP2 C A 27 11.649 -90.906 23.049 1.00 62.48 O
ATOM 5 O5' C A 27 9.697 -89.503 22.317 1.00 62.66 O
ATOM 6 C5' C A 27 9.233 -88.336 21.667 1.00 62.57 C
ATOM 7 C4' C A 27 8.367 -88.664 20.490 1.00 63.66 C
ATOM 8 O4' C A 27 9.157 -89.284 19.446 1.00 64.43 O
ATOM 9 C3' C A 27 7.245 -89.661 20.741 1.00 64.30 C
ATOM 10 O3' C A 27 6.124 -89.068 21.356 1.00 63.90 O
ATOM 11 C2' C A 27 6.965 -90.166 19.343 1.00 65.49 C
ATOM 12 O2' C A 27 6.291 -89.168 18.600 1.00 65.59 O
ATOM 13 C1' C A 27 8.380 -90.279 18.797 1.00 65.54 C
ATOM 14 N1 C A 27 8.984 -91.614 19.075 1.00 65.93 N
ATOM 15 C2 C A 27 8.673 -92.707 18.281 1.00 67.09 C
ATOM 16 O2 C A 27 7.868 -92.476 17.384 1.00 67.72 O
ATOM 17 N3 C A 27 9.239 -93.925 18.530 1.00 67.46 N
ATOM 18 C4 C A 27 10.129 -94.053 19.551 1.00 66.68 C
ATOM 19 N4 C A 27 10.746 -95.207 19.867 1.00 66.97 N
ATOM 20 C5 C A 27 10.454 -92.951 20.371 1.00 65.49 C
ATOM 21 C6 C A 27 9.872 -91.778 20.096 1.00 65.17 C
ATOM 22 P C A 28 5.121 -89.941 22.256 1.00 74.62 P
ATOM 23 OP1 C A 28 3.749 -89.403 22.017 1.00 74.84 O
ATOM 24 OP2 C A 28 5.668 -89.955 23.657 1.00 73.66 O
ATOM 25 O5' C A 28 5.235 -91.383 21.607 1.00 75.74 O
TER
ATOM 1 O3' U B 53 8.861 -88.235 8.071 1.00 90.91 O
ATOM 2 P A B 54 7.616 -87.592 7.295 1.00 86.22 P
ATOM 3 OP1 A B 54 7.317 -88.454 6.149 1.00 87.52 O
ATOM 4 OP2 A B 54 7.929 -86.162 7.047 1.00 85.57 O
ATOM 5 O5' A B 54 6.462 -87.703 8.366 1.00 85.81 O
ATOM 6 C5' A B 54 5.188 -87.137 8.115 1.00 85.97 C
ATOM 7 C4' A B 54 4.713 -86.333 9.286 1.00 84.89 C
ATOM 8 O4' A B 54 4.169 -87.212 10.299 1.00 84.81 O
ATOM 9 C3' A B 54 5.784 -85.549 10.004 1.00 83.77 C
ATOM 10 O3' A B 54 6.053 -84.322 9.364 1.00 83.50 O
ATOM 11 C2' A B 54 5.192 -85.394 11.391 1.00 82.92 C
ATOM 12 O2' A B 54 4.165 -84.410 11.377 1.00 82.68 O
ATOM 13 C1' A B 54 4.536 -86.752 11.576 1.00 83.66 C
ATOM 14 N9 A B 54 5.445 -87.750 12.172 1.00 83.58 N
ATOM 15 C8 A B 54 6.096 -88.736 11.484 1.00 84.39 C
ATOM 16 N7 A B 54 6.808 -89.533 12.236 1.00 84.15 N
ATOM 17 C5 A B 54 6.610 -89.055 13.517 1.00 83.12 C
ATOM 18 C6 A B 54 7.100 -89.480 14.764 1.00 82.43 C
ATOM 19 N6 A B 54 7.923 -90.516 14.960 1.00 82.66 N
ATOM 20 N1 A B 54 6.700 -88.780 15.839 1.00 81.48 N
ATOM 21 C2 A B 54 5.876 -87.742 15.657 1.00 81.25 C
ATOM 22 N3 A B 54 5.349 -87.253 14.540 1.00 81.83 N
ATOM 23 C4 A B 54 5.760 -87.964 13.490 1.00 82.76 C
ATOM 24 P A B 55 7.460 -83.575 9.566 1.00 81.67 P
ATOM 25 OP1 A B 55 7.301 -82.228 8.949 1.00 81.45 O
ATOM 26 OP2 A B 55 8.528 -84.485 9.043 1.00 82.24 O
ATOM 27 O5' A B 55 7.583 -83.438 11.164 1.00 80.54 O
TER
Atoms:
C2: (8.673,-92.707,18.281)
OP1: (11.180,-88.670,24.169)
OP2: (11.649,-90.906,23.049)
C4: (10.129,-94.053,19.551)
O5': (9.697,-89.503,22.317)
C3': (7.245,-89.661,20.741)
C1': (8.380,-90.279,18.797)
O4': (9.157,-89.284,19.446)
C5': (9.233,-88.336,21.667)
P: (11.145,-89.526,22.948)
O2: (7.868,-92.476,17.384)
C4': (8.367,-88.664,20.490)
C2': (6.965,-90.166,19.343)
O2': (6.291,-89.168,18.600)
N1: (8.984,-91.614,19.075)
N3: (9.239,-93.925,18.530)
N4: (10.746,-95.207,19.867)
C6: (9.872,-91.778,20.096)
C5: (10.454,-92.951,20.371)
O3': (6.124,-89.068,21.356)
OP1: (11.180,-88.670,24.169)
OP2: (11.649,-90.906,23.049)
C4: (10.129,-94.053,19.551)
O5': (9.697,-89.503,22.317)
C3': (7.245,-89.661,20.741)
C1': (8.380,-90.279,18.797)
O4': (9.157,-89.284,19.446)
C5': (9.233,-88.336,21.667)
P: (11.145,-89.526,22.948)
O2: (7.868,-92.476,17.384)
C4': (8.367,-88.664,20.490)
C2': (6.965,-90.166,19.343)
O2': (6.291,-89.168,18.600)
N1: (8.984,-91.614,19.075)
N3: (9.239,-93.925,18.530)
N4: (10.746,-95.207,19.867)
C6: (9.872,-91.778,20.096)
C5: (10.454,-92.951,20.371)
O3': (6.124,-89.068,21.356)
OP1: (7.317,-88.454,6.149)
OP2: (7.929,-86.162,7.047)
C3': (5.784,-85.549,10.004)
C1': (4.536,-86.752,11.576)
C5': (5.188,-87.137,8.115)
O4': (4.169,-87.212,10.299)
C8: (6.096,-88.736,11.484)
O2': (4.165,-84.410,11.377)
C6: (7.100,-89.480,14.764)
C5: (6.610,-89.055,13.517)
C4: (5.760,-87.964,13.490)
P: (7.616,-87.592,7.295)
C4': (4.713,-86.333,9.286)
C2': (5.192,-85.394,11.391)
C2: (5.876,-87.742,15.657)
N1: (6.700,-88.780,15.839)
N3: (5.349,-87.253,14.540)
N6: (7.923,-90.516,14.960)
N7: (6.808,-89.533,12.236)
N9: (5.445,-87.750,12.172)
O5': (6.462,-87.703,8.366)
O3': (6.053,-84.322,9.364)
OP2: (7.929,-86.162,7.047)
C3': (5.784,-85.549,10.004)
C1': (4.536,-86.752,11.576)
C5': (5.188,-87.137,8.115)
O4': (4.169,-87.212,10.299)
C8: (6.096,-88.736,11.484)
O2': (4.165,-84.410,11.377)
C6: (7.100,-89.480,14.764)
C5: (6.610,-89.055,13.517)
C4: (5.760,-87.964,13.490)
P: (7.616,-87.592,7.295)
C4': (4.713,-86.333,9.286)
C2': (5.192,-85.394,11.391)
C2: (5.876,-87.742,15.657)
N1: (6.700,-88.780,15.839)
N3: (5.349,-87.253,14.540)
N6: (7.923,-90.516,14.960)
N7: (6.808,-89.533,12.236)
N9: (5.445,-87.750,12.172)
O5': (6.462,-87.703,8.366)
O3': (6.053,-84.322,9.364)
Image (generated by PyMOL):