Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12235:12039
Extra
PDB:
ATOM 1 O3' U A2234 6.434 -29.856 112.729 1.00 54.92 O
ATOM 2 P U A2235 6.365 -30.697 114.096 1.00 54.14 P
ATOM 3 OP1 U A2235 4.950 -30.639 114.568 1.00 54.44 O
ATOM 4 OP2 U A2235 7.433 -30.183 114.987 1.00 54.21 O
ATOM 5 O5' U A2235 6.713 -32.186 113.624 1.00 54.14 O
ATOM 6 C5' U A2235 5.794 -32.961 112.860 1.00 54.14 C
ATOM 7 C4' U A2235 6.439 -34.229 112.342 1.00 54.09 C
ATOM 8 O4' U A2235 7.462 -33.903 111.344 1.00 53.66 O
ATOM 9 C3' U A2235 7.189 -35.076 113.366 1.00 54.38 C
ATOM 10 O3' U A2235 6.344 -35.882 114.151 1.00 54.80 O
ATOM 11 C2' U A2235 8.129 -35.875 112.476 1.00 54.15 C
ATOM 12 O2' U A2235 7.423 -36.904 111.797 1.00 54.20 O
ATOM 13 C1' U A2235 8.533 -34.817 111.443 1.00 53.69 C
ATOM 14 N1 U A2235 9.737 -34.089 111.871 1.00 53.57 N
ATOM 15 C2 U A2235 10.930 -34.617 111.436 1.00 53.40 C
ATOM 16 O2 U A2235 10.961 -35.573 110.696 1.00 53.34 O
ATOM 17 N3 U A2235 12.061 -33.933 111.849 1.00 53.31 N
ATOM 18 C4 U A2235 12.127 -32.820 112.683 1.00 53.38 C
ATOM 19 O4 U A2235 13.237 -32.346 112.988 1.00 53.30 O
ATOM 20 C5 U A2235 10.827 -32.353 113.133 1.00 53.57 C
ATOM 21 C6 U A2235 9.713 -32.986 112.726 1.00 53.66 C
ATOM 22 P G A2236 6.705 -36.224 115.680 1.00 52.44 P
ATOM 23 OP1 G A2236 5.436 -36.573 116.373 1.00 52.84 O
ATOM 24 OP2 G A2236 7.503 -35.111 116.212 1.00 52.35 O
ATOM 25 O5' G A2236 7.612 -37.519 115.543 1.00 52.49 O
TER
ATOM 1 O3' C B2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 2 P A B2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 3 OP1 A B2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 4 OP2 A B2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 5 O5' A B2039 3.514 -42.741 111.098 1.00 65.37 O
ATOM 6 C5' A B2039 3.237 -42.041 112.290 1.00 65.58 C
ATOM 7 C4' A B2039 4.053 -40.790 112.358 1.00 65.27 C
ATOM 8 O4' A B2039 5.440 -41.101 112.108 1.00 65.09 O
ATOM 9 C3' A B2039 3.730 -39.732 111.328 1.00 64.88 C
ATOM 10 O3' A B2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 11 C2' A B2039 5.013 -38.934 111.281 1.00 64.57 C
ATOM 12 O2' A B2039 5.065 -38.056 112.384 1.00 64.70 O
ATOM 13 C1' A B2039 6.064 -40.015 111.488 1.00 64.67 C
ATOM 14 N9 A B2039 6.650 -40.472 110.225 1.00 64.36 N
ATOM 15 C8 A B2039 6.346 -41.599 109.528 1.00 64.42 C
ATOM 16 N7 A B2039 7.045 -41.754 108.439 1.00 64.11 N
ATOM 17 C5 A B2039 7.869 -40.648 108.441 1.00 63.82 C
ATOM 18 C6 A B2039 8.856 -40.234 107.528 1.00 63.42 C
ATOM 19 N6 A B2039 9.127 -40.953 106.431 1.00 63.27 N
ATOM 20 N1 A B2039 9.531 -39.085 107.788 1.00 63.21 N
ATOM 21 C2 A B2039 9.187 -38.435 108.913 1.00 63.41 C
ATOM 22 N3 A B2039 8.273 -38.725 109.842 1.00 63.79 N
ATOM 23 C4 A B2039 7.649 -39.862 109.539 1.00 63.97 C
ATOM 24 P A B2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 25 OP1 A B2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 26 OP2 A B2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 27 O5' A B2040 2.061 -37.301 109.897 1.00 51.63 O
TER
ATOM 2 P U A2235 6.365 -30.697 114.096 1.00 54.14 P
ATOM 3 OP1 U A2235 4.950 -30.639 114.568 1.00 54.44 O
ATOM 4 OP2 U A2235 7.433 -30.183 114.987 1.00 54.21 O
ATOM 5 O5' U A2235 6.713 -32.186 113.624 1.00 54.14 O
ATOM 6 C5' U A2235 5.794 -32.961 112.860 1.00 54.14 C
ATOM 7 C4' U A2235 6.439 -34.229 112.342 1.00 54.09 C
ATOM 8 O4' U A2235 7.462 -33.903 111.344 1.00 53.66 O
ATOM 9 C3' U A2235 7.189 -35.076 113.366 1.00 54.38 C
ATOM 10 O3' U A2235 6.344 -35.882 114.151 1.00 54.80 O
ATOM 11 C2' U A2235 8.129 -35.875 112.476 1.00 54.15 C
ATOM 12 O2' U A2235 7.423 -36.904 111.797 1.00 54.20 O
ATOM 13 C1' U A2235 8.533 -34.817 111.443 1.00 53.69 C
ATOM 14 N1 U A2235 9.737 -34.089 111.871 1.00 53.57 N
ATOM 15 C2 U A2235 10.930 -34.617 111.436 1.00 53.40 C
ATOM 16 O2 U A2235 10.961 -35.573 110.696 1.00 53.34 O
ATOM 17 N3 U A2235 12.061 -33.933 111.849 1.00 53.31 N
ATOM 18 C4 U A2235 12.127 -32.820 112.683 1.00 53.38 C
ATOM 19 O4 U A2235 13.237 -32.346 112.988 1.00 53.30 O
ATOM 20 C5 U A2235 10.827 -32.353 113.133 1.00 53.57 C
ATOM 21 C6 U A2235 9.713 -32.986 112.726 1.00 53.66 C
ATOM 22 P G A2236 6.705 -36.224 115.680 1.00 52.44 P
ATOM 23 OP1 G A2236 5.436 -36.573 116.373 1.00 52.84 O
ATOM 24 OP2 G A2236 7.503 -35.111 116.212 1.00 52.35 O
ATOM 25 O5' G A2236 7.612 -37.519 115.543 1.00 52.49 O
TER
ATOM 1 O3' C B2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 2 P A B2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 3 OP1 A B2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 4 OP2 A B2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 5 O5' A B2039 3.514 -42.741 111.098 1.00 65.37 O
ATOM 6 C5' A B2039 3.237 -42.041 112.290 1.00 65.58 C
ATOM 7 C4' A B2039 4.053 -40.790 112.358 1.00 65.27 C
ATOM 8 O4' A B2039 5.440 -41.101 112.108 1.00 65.09 O
ATOM 9 C3' A B2039 3.730 -39.732 111.328 1.00 64.88 C
ATOM 10 O3' A B2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 11 C2' A B2039 5.013 -38.934 111.281 1.00 64.57 C
ATOM 12 O2' A B2039 5.065 -38.056 112.384 1.00 64.70 O
ATOM 13 C1' A B2039 6.064 -40.015 111.488 1.00 64.67 C
ATOM 14 N9 A B2039 6.650 -40.472 110.225 1.00 64.36 N
ATOM 15 C8 A B2039 6.346 -41.599 109.528 1.00 64.42 C
ATOM 16 N7 A B2039 7.045 -41.754 108.439 1.00 64.11 N
ATOM 17 C5 A B2039 7.869 -40.648 108.441 1.00 63.82 C
ATOM 18 C6 A B2039 8.856 -40.234 107.528 1.00 63.42 C
ATOM 19 N6 A B2039 9.127 -40.953 106.431 1.00 63.27 N
ATOM 20 N1 A B2039 9.531 -39.085 107.788 1.00 63.21 N
ATOM 21 C2 A B2039 9.187 -38.435 108.913 1.00 63.41 C
ATOM 22 N3 A B2039 8.273 -38.725 109.842 1.00 63.79 N
ATOM 23 C4 A B2039 7.649 -39.862 109.539 1.00 63.97 C
ATOM 24 P A B2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 25 OP1 A B2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 26 OP2 A B2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 27 O5' A B2040 2.061 -37.301 109.897 1.00 51.63 O
TER
Atoms:
C4: (12.127,-32.820,112.683)
N3: (12.061,-33.933,111.849)
OP1: (4.950,-30.639,114.568)
OP2: (7.433,-30.183,114.987)
C2: (10.930,-34.617,111.436)
C1': (8.533,-34.817,111.443)
C3': (7.189,-35.076,113.366)
O5': (6.713,-32.186,113.624)
O4': (7.462,-33.903,111.344)
C5': (5.794,-32.961,112.860)
P: (6.365,-30.697,114.096)
C4': (6.439,-34.229,112.342)
C2': (8.129,-35.875,112.476)
O2': (7.423,-36.904,111.797)
N1: (9.737,-34.089,111.871)
O4: (13.237,-32.346,112.988)
O2: (10.961,-35.573,110.696)
C6: (9.713,-32.986,112.726)
C5: (10.827,-32.353,113.133)
O3': (6.344,-35.882,114.151)
N3: (12.061,-33.933,111.849)
OP1: (4.950,-30.639,114.568)
OP2: (7.433,-30.183,114.987)
C2: (10.930,-34.617,111.436)
C1': (8.533,-34.817,111.443)
C3': (7.189,-35.076,113.366)
O5': (6.713,-32.186,113.624)
O4': (7.462,-33.903,111.344)
C5': (5.794,-32.961,112.860)
P: (6.365,-30.697,114.096)
C4': (6.439,-34.229,112.342)
C2': (8.129,-35.875,112.476)
O2': (7.423,-36.904,111.797)
N1: (9.737,-34.089,111.871)
O4: (13.237,-32.346,112.988)
O2: (10.961,-35.573,110.696)
C6: (9.713,-32.986,112.726)
C5: (10.827,-32.353,113.133)
O3': (6.344,-35.882,114.151)
OP1: (1.068,-43.400,110.859)
OP2: (2.799,-44.010,109.030)
C3': (3.730,-39.732,111.328)
C1': (6.064,-40.015,111.488)
C5': (3.237,-42.041,112.290)
O4': (5.440,-41.101,112.108)
C8: (6.346,-41.599,109.528)
O2': (5.065,-38.056,112.384)
C6: (8.856,-40.234,107.528)
C5: (7.869,-40.648,108.441)
C4: (7.649,-39.862,109.539)
P: (2.473,-43.782,110.480)
C4': (4.053,-40.790,112.358)
C2': (5.013,-38.934,111.281)
C2: (9.187,-38.435,108.913)
N1: (9.531,-39.085,107.788)
N3: (8.273,-38.725,109.842)
N6: (9.127,-40.953,106.431)
N7: (7.045,-41.754,108.439)
N9: (6.650,-40.472,110.225)
O5': (3.514,-42.741,111.098)
O3': (2.612,-38.949,111.700)
OP2: (2.799,-44.010,109.030)
C3': (3.730,-39.732,111.328)
C1': (6.064,-40.015,111.488)
C5': (3.237,-42.041,112.290)
O4': (5.440,-41.101,112.108)
C8: (6.346,-41.599,109.528)
O2': (5.065,-38.056,112.384)
C6: (8.856,-40.234,107.528)
C5: (7.869,-40.648,108.441)
C4: (7.649,-39.862,109.539)
P: (2.473,-43.782,110.480)
C4': (4.053,-40.790,112.358)
C2': (5.013,-38.934,111.281)
C2: (9.187,-38.435,108.913)
N1: (9.531,-39.085,107.788)
N3: (8.273,-38.725,109.842)
N6: (9.127,-40.953,106.431)
N7: (7.045,-41.754,108.439)
N9: (6.650,-40.472,110.225)
O5': (3.514,-42.741,111.098)
O3': (2.612,-38.949,111.700)
Image (generated by PyMOL):