ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3IRW:R52:R26

Extra

PDB:
ATOM 1 O3' C A 51 5.848 -16.246 16.886 1.00 38.99 O
ATOM 2 P U A 52 5.678 -16.320 18.468 1.00 35.18 P
ATOM 3 OP1 U A 52 4.582 -15.398 18.832 1.00 35.17 O
ATOM 4 OP2 U A 52 7.014 -16.216 19.098 1.00 32.01 O
ATOM 5 O5' U A 52 5.147 -17.798 18.677 1.00 36.72 O
ATOM 6 C5' U A 52 3.762 -18.016 18.549 1.00 38.81 C
ATOM 7 C4' U A 52 3.450 -19.465 18.829 1.00 39.95 C
ATOM 8 O4' U A 52 4.398 -20.301 18.132 1.00 39.48 O
ATOM 9 C3' U A 52 3.626 -19.872 20.272 1.00 42.22 C
ATOM 10 O3' U A 52 2.486 -19.468 21.023 1.00 48.13 O
ATOM 11 C2' U A 52 3.738 -21.388 20.129 1.00 38.70 C
ATOM 12 O2' U A 52 2.485 -22.016 19.934 1.00 36.45 O
ATOM 13 C1' U A 52 4.574 -21.501 18.859 1.00 36.87 C
ATOM 14 N1 U A 52 6.016 -21.656 19.096 1.00 34.13 N
ATOM 15 C2 U A 52 6.491 -22.873 19.514 1.00 35.29 C
ATOM 16 O2 U A 52 5.769 -23.832 19.718 1.00 36.56 O
ATOM 17 N3 U A 52 7.848 -22.929 19.699 1.00 36.14 N
ATOM 18 C4 U A 52 8.757 -21.907 19.503 1.00 36.37 C
ATOM 19 O4 U A 52 9.952 -22.113 19.709 1.00 37.70 O
ATOM 20 C5 U A 52 8.178 -20.661 19.061 1.00 34.50 C
ATOM 21 C6 U A 52 6.855 -20.587 18.875 1.00 33.37 C
ATOM 22 P A A 53 2.645 -19.005 22.551 1.00 50.38 P
ATOM 23 OP1 A A 53 1.284 -18.908 23.123 1.00 51.37 O
ATOM 24 OP2 A A 53 3.564 -17.843 22.590 1.00 49.60 O
ATOM 25 O5' A A 53 3.395 -20.235 23.237 1.00 53.19 O
TER

ATOM 1 O3' A B 25 -5.018 -24.715 21.624 1.00 48.26 O
ATOM 2 P A B 26 -5.218 -24.598 20.052 1.00 50.24 P
ATOM 3 OP1 A B 26 -6.470 -23.854 19.784 1.00 50.92 O
ATOM 4 OP2 A B 26 -5.005 -25.947 19.480 1.00 50.56 O
ATOM 5 O5' A B 26 -3.995 -23.669 19.633 1.00 46.54 O
ATOM 6 C5' A B 26 -3.936 -22.364 20.140 1.00 43.00 C
ATOM 7 C4' A B 26 -2.519 -21.861 20.031 1.00 41.88 C
ATOM 8 O4' A B 26 -1.639 -22.785 20.712 1.00 40.59 O
ATOM 9 C3' A B 26 -2.004 -21.806 18.610 1.00 41.34 C
ATOM 10 O3' A B 26 -2.348 -20.555 18.048 1.00 42.02 O
ATOM 11 C2' A B 26 -0.500 -21.946 18.815 1.00 41.17 C
ATOM 12 O2' A B 26 0.101 -20.716 19.143 1.00 42.01 O
ATOM 13 C1' A B 26 -0.417 -22.888 20.013 1.00 40.56 C
ATOM 14 N9 A B 26 -0.238 -24.289 19.658 1.00 41.45 N
ATOM 15 C8 A B 26 -1.221 -25.215 19.447 1.00 42.16 C
ATOM 16 N7 A B 26 -0.768 -26.407 19.145 1.00 41.17 N
ATOM 17 C5 A B 26 0.608 -26.251 19.160 1.00 40.74 C
ATOM 18 C6 A B 26 1.668 -27.150 18.923 1.00 40.96 C
ATOM 19 N6 A B 26 1.494 -28.441 18.608 1.00 39.52 N
ATOM 20 N1 A B 26 2.923 -26.667 19.022 1.00 41.14 N
ATOM 21 C2 A B 26 3.095 -25.376 19.334 1.00 41.64 C
ATOM 22 N3 A B 26 2.180 -24.441 19.579 1.00 41.44 N
ATOM 23 C4 A B 26 0.948 -24.950 19.475 1.00 40.46 C
ATOM 24 P A B 27 -2.482 -20.405 16.462 1.00 45.13 P
ATOM 25 OP1 A B 27 -2.845 -19.002 16.166 1.00 47.81 O
ATOM 26 OP2 A B 27 -3.335 -21.501 15.960 1.00 45.29 O
ATOM 27 O5' A B 27 -0.987 -20.667 15.954 1.00 46.11 O
TER

Atoms:
C4: (8.757,-21.907,19.503)
N3: (7.848,-22.929,19.699)
OP1: (4.582,-15.398,18.832)
OP2: (7.014,-16.216,19.098)
C2: (6.491,-22.873,19.514)
C1': (4.574,-21.501,18.859)
C3': (3.626,-19.872,20.272)
O5': (5.147,-17.798,18.677)
O4': (4.398,-20.301,18.132)
C5': (3.762,-18.016,18.549)
P: (5.678,-16.320,18.468)
C4': (3.450,-19.465,18.829)
C2': (3.738,-21.388,20.129)
O2': (2.485,-22.016,19.934)
N1: (6.016,-21.656,19.096)
O4: (9.952,-22.113,19.709)
O2: (5.769,-23.832,19.718)
C6: (6.855,-20.587,18.875)
C5: (8.178,-20.661,19.061)
O3': (2.486,-19.468,21.023)
OP1: (-6.470,-23.854,19.784)
OP2: (-5.005,-25.947,19.480)
C3': (-2.004,-21.806,18.610)
C1': (-0.417,-22.888,20.013)
C5': (-3.936,-22.364,20.140)
O4': (-1.639,-22.785,20.712)
C8: (-1.221,-25.215,19.447)
O2': (0.101,-20.716,19.143)
C6: (1.668,-27.150,18.923)
C5: (0.608,-26.251,19.160)
C4: (0.948,-24.950,19.475)
P: (-5.218,-24.598,20.052)
C4': (-2.519,-21.861,20.031)
C2': (-0.500,-21.946,18.815)
C2: (3.095,-25.376,19.334)
N1: (2.923,-26.667,19.022)
N3: (2.180,-24.441,19.579)
N6: (1.494,-28.441,18.608)
N7: (-0.768,-26.407,19.145)
N9: (-0.238,-24.289,19.658)
O5': (-3.995,-23.669,19.633)
O3': (-2.348,-20.555,18.048)
Image (generated by PyMOL):
PyMOL image
show in jmol