Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBT:D21:D7
Extra
PDB:
ATOM 1 O3' A A 20 -1.107 38.232 10.907 1.00 45.31 O
ATOM 2 P C A 21 0.306 38.723 10.303 1.00 48.03 P
ATOM 3 OP1 C A 21 0.872 39.679 11.276 1.00 48.09 O
ATOM 4 OP2 C A 21 0.146 39.138 8.886 1.00 48.06 O
ATOM 5 O5' C A 21 1.202 37.409 10.308 1.00 44.73 O
ATOM 6 C5' C A 21 1.439 36.695 11.518 1.00 46.34 C
ATOM 7 C4' C A 21 2.307 35.492 11.253 1.00 48.64 C
ATOM 8 O4' C A 21 1.490 34.456 10.651 1.00 50.15 O
ATOM 9 C3' C A 21 3.452 35.698 10.266 1.00 49.64 C
ATOM 10 O3' C A 21 4.607 36.220 10.917 1.00 49.54 O
ATOM 11 C2' C A 21 3.691 34.285 9.742 1.00 51.23 C
ATOM 12 O2' C A 21 4.509 33.485 10.570 1.00 51.42 O
ATOM 13 C1' C A 21 2.270 33.721 9.719 1.00 52.95 C
ATOM 14 N1 C A 21 1.648 33.802 8.384 1.00 54.48 N
ATOM 15 C2 C A 21 1.870 32.749 7.487 1.00 53.44 C
ATOM 16 O2 C A 21 2.571 31.782 7.848 1.00 55.60 O
ATOM 17 N3 C A 21 1.321 32.809 6.254 1.00 51.39 N
ATOM 18 C4 C A 21 0.579 33.862 5.902 1.00 50.00 C
ATOM 19 N4 C A 21 0.060 33.873 4.669 1.00 49.05 N
ATOM 20 C5 C A 21 0.334 34.948 6.797 1.00 49.28 C
ATOM 21 C6 C A 21 0.881 34.877 8.014 1.00 51.76 C
ATOM 22 P C A 22 5.698 37.053 10.070 1.00 55.85 P
ATOM 23 OP1 C A 22 6.902 37.235 10.932 1.00 55.63 O
ATOM 24 OP2 C A 22 5.034 38.246 9.482 1.00 48.37 O
ATOM 25 O5' C A 22 6.110 36.074 8.884 1.00 51.47 O
TER
ATOM 1 O3' U B 6 -0.568 35.831 -4.080 1.00 36.17 O
ATOM 2 P C B 7 -1.909 34.980 -3.834 1.00 35.88 P
ATOM 3 OP1 C B 7 -2.059 33.990 -4.922 1.00 37.93 O
ATOM 4 OP2 C B 7 -3.024 35.919 -3.545 1.00 41.34 O
ATOM 5 O5' C B 7 -1.606 34.193 -2.489 1.00 39.44 O
ATOM 6 C5' C B 7 -0.379 33.493 -2.305 1.00 36.93 C
ATOM 7 C4' C B 7 -0.154 33.227 -0.835 1.00 38.34 C
ATOM 8 O4' C B 7 0.155 34.482 -0.167 1.00 37.81 O
ATOM 9 C3' C B 7 -1.348 32.665 -0.074 1.00 39.77 C
ATOM 10 O3' C B 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 11 C2' C B 7 -1.074 33.131 1.356 1.00 40.21 C
ATOM 12 O2' C B 7 -0.180 32.312 2.086 1.00 43.52 O
ATOM 13 C1' C B 7 -0.462 34.512 1.109 1.00 37.40 C
ATOM 14 N1 C B 7 -1.448 35.606 1.128 1.00 36.80 N
ATOM 15 C2 C B 7 -1.635 36.329 2.313 1.00 36.27 C
ATOM 16 O2 C B 7 -0.961 36.042 3.309 1.00 38.34 O
ATOM 17 N3 C B 7 -2.548 37.320 2.344 1.00 36.53 N
ATOM 18 C4 C B 7 -3.266 37.600 1.255 1.00 35.35 C
ATOM 19 N4 C B 7 -4.169 38.576 1.341 1.00 36.62 N
ATOM 20 C5 C B 7 -3.093 36.888 0.033 1.00 36.43 C
ATOM 21 C6 C B 7 -2.181 35.911 0.013 1.00 36.27 C
ATOM 22 P A B 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 23 OP1 A B 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 24 OP2 A B 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 25 O5' A B 8 -3.821 31.332 -0.872 1.00 43.01 O
TER
ATOM 2 P C A 21 0.306 38.723 10.303 1.00 48.03 P
ATOM 3 OP1 C A 21 0.872 39.679 11.276 1.00 48.09 O
ATOM 4 OP2 C A 21 0.146 39.138 8.886 1.00 48.06 O
ATOM 5 O5' C A 21 1.202 37.409 10.308 1.00 44.73 O
ATOM 6 C5' C A 21 1.439 36.695 11.518 1.00 46.34 C
ATOM 7 C4' C A 21 2.307 35.492 11.253 1.00 48.64 C
ATOM 8 O4' C A 21 1.490 34.456 10.651 1.00 50.15 O
ATOM 9 C3' C A 21 3.452 35.698 10.266 1.00 49.64 C
ATOM 10 O3' C A 21 4.607 36.220 10.917 1.00 49.54 O
ATOM 11 C2' C A 21 3.691 34.285 9.742 1.00 51.23 C
ATOM 12 O2' C A 21 4.509 33.485 10.570 1.00 51.42 O
ATOM 13 C1' C A 21 2.270 33.721 9.719 1.00 52.95 C
ATOM 14 N1 C A 21 1.648 33.802 8.384 1.00 54.48 N
ATOM 15 C2 C A 21 1.870 32.749 7.487 1.00 53.44 C
ATOM 16 O2 C A 21 2.571 31.782 7.848 1.00 55.60 O
ATOM 17 N3 C A 21 1.321 32.809 6.254 1.00 51.39 N
ATOM 18 C4 C A 21 0.579 33.862 5.902 1.00 50.00 C
ATOM 19 N4 C A 21 0.060 33.873 4.669 1.00 49.05 N
ATOM 20 C5 C A 21 0.334 34.948 6.797 1.00 49.28 C
ATOM 21 C6 C A 21 0.881 34.877 8.014 1.00 51.76 C
ATOM 22 P C A 22 5.698 37.053 10.070 1.00 55.85 P
ATOM 23 OP1 C A 22 6.902 37.235 10.932 1.00 55.63 O
ATOM 24 OP2 C A 22 5.034 38.246 9.482 1.00 48.37 O
ATOM 25 O5' C A 22 6.110 36.074 8.884 1.00 51.47 O
TER
ATOM 1 O3' U B 6 -0.568 35.831 -4.080 1.00 36.17 O
ATOM 2 P C B 7 -1.909 34.980 -3.834 1.00 35.88 P
ATOM 3 OP1 C B 7 -2.059 33.990 -4.922 1.00 37.93 O
ATOM 4 OP2 C B 7 -3.024 35.919 -3.545 1.00 41.34 O
ATOM 5 O5' C B 7 -1.606 34.193 -2.489 1.00 39.44 O
ATOM 6 C5' C B 7 -0.379 33.493 -2.305 1.00 36.93 C
ATOM 7 C4' C B 7 -0.154 33.227 -0.835 1.00 38.34 C
ATOM 8 O4' C B 7 0.155 34.482 -0.167 1.00 37.81 O
ATOM 9 C3' C B 7 -1.348 32.665 -0.074 1.00 39.77 C
ATOM 10 O3' C B 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 11 C2' C B 7 -1.074 33.131 1.356 1.00 40.21 C
ATOM 12 O2' C B 7 -0.180 32.312 2.086 1.00 43.52 O
ATOM 13 C1' C B 7 -0.462 34.512 1.109 1.00 37.40 C
ATOM 14 N1 C B 7 -1.448 35.606 1.128 1.00 36.80 N
ATOM 15 C2 C B 7 -1.635 36.329 2.313 1.00 36.27 C
ATOM 16 O2 C B 7 -0.961 36.042 3.309 1.00 38.34 O
ATOM 17 N3 C B 7 -2.548 37.320 2.344 1.00 36.53 N
ATOM 18 C4 C B 7 -3.266 37.600 1.255 1.00 35.35 C
ATOM 19 N4 C B 7 -4.169 38.576 1.341 1.00 36.62 N
ATOM 20 C5 C B 7 -3.093 36.888 0.033 1.00 36.43 C
ATOM 21 C6 C B 7 -2.181 35.911 0.013 1.00 36.27 C
ATOM 22 P A B 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 23 OP1 A B 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 24 OP2 A B 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 25 O5' A B 8 -3.821 31.332 -0.872 1.00 43.01 O
TER
Atoms:
C2: (1.870,32.749,7.487)
OP1: (0.872,39.679,11.276)
OP2: (0.146,39.138,8.886)
C4: (0.579,33.862,5.902)
O5': (1.202,37.409,10.308)
C3': (3.452,35.698,10.266)
C1': (2.270,33.721,9.719)
O4': (1.490,34.456,10.651)
C5': (1.439,36.695,11.518)
P: (0.306,38.723,10.303)
O2: (2.571,31.782,7.848)
C4': (2.307,35.492,11.253)
C2': (3.691,34.285,9.742)
O2': (4.509,33.485,10.570)
N1: (1.648,33.802,8.384)
N3: (1.321,32.809,6.254)
N4: (0.060,33.873,4.669)
C6: (0.881,34.877,8.014)
C5: (0.334,34.948,6.797)
O3': (4.607,36.220,10.917)
OP1: (0.872,39.679,11.276)
OP2: (0.146,39.138,8.886)
C4: (0.579,33.862,5.902)
O5': (1.202,37.409,10.308)
C3': (3.452,35.698,10.266)
C1': (2.270,33.721,9.719)
O4': (1.490,34.456,10.651)
C5': (1.439,36.695,11.518)
P: (0.306,38.723,10.303)
O2: (2.571,31.782,7.848)
C4': (2.307,35.492,11.253)
C2': (3.691,34.285,9.742)
O2': (4.509,33.485,10.570)
N1: (1.648,33.802,8.384)
N3: (1.321,32.809,6.254)
N4: (0.060,33.873,4.669)
C6: (0.881,34.877,8.014)
C5: (0.334,34.948,6.797)
O3': (4.607,36.220,10.917)
C2: (-1.635,36.329,2.313)
OP1: (-2.059,33.990,-4.922)
OP2: (-3.024,35.919,-3.545)
C4: (-3.266,37.600,1.255)
O5': (-1.606,34.193,-2.489)
C3': (-1.348,32.665,-0.074)
C1': (-0.462,34.512,1.109)
O4': (0.155,34.482,-0.167)
C5': (-0.379,33.493,-2.305)
P: (-1.909,34.980,-3.834)
O2: (-0.961,36.042,3.309)
C4': (-0.154,33.227,-0.835)
C2': (-1.074,33.131,1.356)
O2': (-0.180,32.312,2.086)
N1: (-1.448,35.606,1.128)
N3: (-2.548,37.320,2.344)
N4: (-4.169,38.576,1.341)
C6: (-2.181,35.911,0.013)
C5: (-3.093,36.888,0.033)
O3': (-1.408,31.247,-0.189)
OP1: (-2.059,33.990,-4.922)
OP2: (-3.024,35.919,-3.545)
C4: (-3.266,37.600,1.255)
O5': (-1.606,34.193,-2.489)
C3': (-1.348,32.665,-0.074)
C1': (-0.462,34.512,1.109)
O4': (0.155,34.482,-0.167)
C5': (-0.379,33.493,-2.305)
P: (-1.909,34.980,-3.834)
O2: (-0.961,36.042,3.309)
C4': (-0.154,33.227,-0.835)
C2': (-1.074,33.131,1.356)
O2': (-0.180,32.312,2.086)
N1: (-1.448,35.606,1.128)
N3: (-2.548,37.320,2.344)
N4: (-4.169,38.576,1.341)
C6: (-2.181,35.911,0.013)
C5: (-3.093,36.888,0.033)
O3': (-1.408,31.247,-0.189)
Image (generated by PyMOL):