Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11133:11259
Extra
PDB:
ATOM 1 O3' U A1132 35.401 6.743 5.724 1.00 43.78 O
ATOM 2 P C A1133 35.057 8.148 4.993 1.00 54.38 P
ATOM 3 OP1 C A1133 33.595 8.204 4.786 1.00 54.59 O
ATOM 4 OP2 C A1133 35.944 8.257 3.816 1.00 54.77 O
ATOM 5 O5' C A1133 35.486 9.203 6.083 1.00 54.03 O
ATOM 6 C5' C A1133 34.726 9.421 7.259 1.00 53.67 C
ATOM 7 C4' C A1133 34.735 10.877 7.608 1.00 53.69 C
ATOM 8 O4' C A1133 36.070 11.231 8.052 1.00 53.46 O
ATOM 9 C3' C A1133 34.434 11.793 6.417 1.00 54.26 C
ATOM 10 O3' C A1133 33.811 12.992 6.859 1.00 54.29 O
ATOM 11 C2' C A1133 35.811 12.113 5.890 1.00 54.37 C
ATOM 12 O2' C A1133 35.879 13.292 5.139 1.00 54.79 O
ATOM 13 C1' C A1133 36.624 12.203 7.180 1.00 53.84 C
ATOM 14 N1 C A1133 38.042 11.896 6.983 1.00 53.77 N
ATOM 15 C2 C A1133 39.012 12.844 7.278 1.00 53.70 C
ATOM 16 O2 C A1133 38.614 13.905 7.782 1.00 53.68 O
ATOM 17 N3 C A1133 40.339 12.608 7.052 1.00 53.67 N
ATOM 18 C4 C A1133 40.694 11.441 6.531 1.00 53.71 C
ATOM 19 N4 C A1133 41.991 11.195 6.306 1.00 53.70 N
ATOM 20 C5 C A1133 39.708 10.463 6.196 1.00 53.80 C
ATOM 21 C6 C A1133 38.418 10.725 6.429 1.00 53.82 C
ATOM 22 P A A1134 32.212 13.034 7.105 1.00 56.23 P
ATOM 23 OP1 A A1134 31.590 11.919 6.301 1.00 56.46 O
ATOM 24 OP2 A A1134 31.763 14.479 6.850 1.00 56.55 O
ATOM 25 O5' A A1134 32.111 12.683 8.674 1.00 55.63 O
TER
ATOM 1 O3' C B1258 48.830 14.924 11.531 1.00 41.21 O
ATOM 2 P U B1259 48.141 15.683 10.313 1.00 45.80 P
ATOM 3 OP1 U B1259 49.181 15.757 9.255 1.00 46.14 O
ATOM 4 OP2 U B1259 47.541 16.916 10.820 1.00 45.81 O
ATOM 5 O5' U B1259 46.996 14.693 9.882 1.00 45.85 O
ATOM 6 C5' U B1259 47.309 13.366 9.550 1.00 45.79 C
ATOM 7 C4' U B1259 46.171 12.699 8.872 1.00 45.98 C
ATOM 8 O4' U B1259 45.041 12.688 9.772 1.00 45.71 O
ATOM 9 C3' U B1259 45.690 13.374 7.586 1.00 46.53 C
ATOM 10 O3' U B1259 45.362 12.379 6.632 1.00 46.77 O
ATOM 11 C2' U B1259 44.415 14.052 8.021 1.00 46.51 C
ATOM 12 O2' U B1259 43.480 14.240 6.990 1.00 46.94 O
ATOM 13 C1' U B1259 43.909 13.071 9.062 1.00 46.04 C
ATOM 14 N1 U B1259 42.961 13.648 9.977 1.00 45.84 N
ATOM 15 C2 U B1259 41.714 13.056 10.095 1.00 45.79 C
ATOM 16 O2 U B1259 41.369 12.022 9.556 1.00 45.88 O
ATOM 17 N3 U B1259 40.858 13.725 10.921 1.00 45.64 N
ATOM 18 C4 U B1259 41.132 14.909 11.597 1.00 45.55 C
ATOM 19 O4 U B1259 40.242 15.416 12.310 1.00 45.43 O
ATOM 20 C5 U B1259 42.450 15.445 11.386 1.00 45.62 C
ATOM 21 C6 U B1259 43.298 14.817 10.583 1.00 45.76 C
ATOM 22 P C B1260 45.487 12.680 5.064 1.00 47.33 P
ATOM 23 OP1 C B1260 46.044 14.042 4.912 1.00 47.53 O
ATOM 24 OP2 C B1260 44.176 12.366 4.448 1.00 47.58 O
ATOM 25 O5' C B1260 46.551 11.607 4.607 1.00 47.35 O
TER
ATOM 2 P C A1133 35.057 8.148 4.993 1.00 54.38 P
ATOM 3 OP1 C A1133 33.595 8.204 4.786 1.00 54.59 O
ATOM 4 OP2 C A1133 35.944 8.257 3.816 1.00 54.77 O
ATOM 5 O5' C A1133 35.486 9.203 6.083 1.00 54.03 O
ATOM 6 C5' C A1133 34.726 9.421 7.259 1.00 53.67 C
ATOM 7 C4' C A1133 34.735 10.877 7.608 1.00 53.69 C
ATOM 8 O4' C A1133 36.070 11.231 8.052 1.00 53.46 O
ATOM 9 C3' C A1133 34.434 11.793 6.417 1.00 54.26 C
ATOM 10 O3' C A1133 33.811 12.992 6.859 1.00 54.29 O
ATOM 11 C2' C A1133 35.811 12.113 5.890 1.00 54.37 C
ATOM 12 O2' C A1133 35.879 13.292 5.139 1.00 54.79 O
ATOM 13 C1' C A1133 36.624 12.203 7.180 1.00 53.84 C
ATOM 14 N1 C A1133 38.042 11.896 6.983 1.00 53.77 N
ATOM 15 C2 C A1133 39.012 12.844 7.278 1.00 53.70 C
ATOM 16 O2 C A1133 38.614 13.905 7.782 1.00 53.68 O
ATOM 17 N3 C A1133 40.339 12.608 7.052 1.00 53.67 N
ATOM 18 C4 C A1133 40.694 11.441 6.531 1.00 53.71 C
ATOM 19 N4 C A1133 41.991 11.195 6.306 1.00 53.70 N
ATOM 20 C5 C A1133 39.708 10.463 6.196 1.00 53.80 C
ATOM 21 C6 C A1133 38.418 10.725 6.429 1.00 53.82 C
ATOM 22 P A A1134 32.212 13.034 7.105 1.00 56.23 P
ATOM 23 OP1 A A1134 31.590 11.919 6.301 1.00 56.46 O
ATOM 24 OP2 A A1134 31.763 14.479 6.850 1.00 56.55 O
ATOM 25 O5' A A1134 32.111 12.683 8.674 1.00 55.63 O
TER
ATOM 1 O3' C B1258 48.830 14.924 11.531 1.00 41.21 O
ATOM 2 P U B1259 48.141 15.683 10.313 1.00 45.80 P
ATOM 3 OP1 U B1259 49.181 15.757 9.255 1.00 46.14 O
ATOM 4 OP2 U B1259 47.541 16.916 10.820 1.00 45.81 O
ATOM 5 O5' U B1259 46.996 14.693 9.882 1.00 45.85 O
ATOM 6 C5' U B1259 47.309 13.366 9.550 1.00 45.79 C
ATOM 7 C4' U B1259 46.171 12.699 8.872 1.00 45.98 C
ATOM 8 O4' U B1259 45.041 12.688 9.772 1.00 45.71 O
ATOM 9 C3' U B1259 45.690 13.374 7.586 1.00 46.53 C
ATOM 10 O3' U B1259 45.362 12.379 6.632 1.00 46.77 O
ATOM 11 C2' U B1259 44.415 14.052 8.021 1.00 46.51 C
ATOM 12 O2' U B1259 43.480 14.240 6.990 1.00 46.94 O
ATOM 13 C1' U B1259 43.909 13.071 9.062 1.00 46.04 C
ATOM 14 N1 U B1259 42.961 13.648 9.977 1.00 45.84 N
ATOM 15 C2 U B1259 41.714 13.056 10.095 1.00 45.79 C
ATOM 16 O2 U B1259 41.369 12.022 9.556 1.00 45.88 O
ATOM 17 N3 U B1259 40.858 13.725 10.921 1.00 45.64 N
ATOM 18 C4 U B1259 41.132 14.909 11.597 1.00 45.55 C
ATOM 19 O4 U B1259 40.242 15.416 12.310 1.00 45.43 O
ATOM 20 C5 U B1259 42.450 15.445 11.386 1.00 45.62 C
ATOM 21 C6 U B1259 43.298 14.817 10.583 1.00 45.76 C
ATOM 22 P C B1260 45.487 12.680 5.064 1.00 47.33 P
ATOM 23 OP1 C B1260 46.044 14.042 4.912 1.00 47.53 O
ATOM 24 OP2 C B1260 44.176 12.366 4.448 1.00 47.58 O
ATOM 25 O5' C B1260 46.551 11.607 4.607 1.00 47.35 O
TER
Atoms:
C2: (39.012,12.844,7.278)
OP1: (33.595,8.204,4.786)
OP2: (35.944,8.257,3.816)
C4: (40.694,11.441,6.531)
O5': (35.486,9.203,6.083)
C3': (34.434,11.793,6.417)
C1': (36.624,12.203,7.180)
O4': (36.070,11.231,8.052)
C5': (34.726,9.421,7.259)
P: (35.057,8.148,4.993)
O2: (38.614,13.905,7.782)
C4': (34.735,10.877,7.608)
C2': (35.811,12.113,5.890)
O2': (35.879,13.292,5.139)
N1: (38.042,11.896,6.983)
N3: (40.339,12.608,7.052)
N4: (41.991,11.195,6.306)
C6: (38.418,10.725,6.429)
C5: (39.708,10.463,6.196)
O3': (33.811,12.992,6.859)
OP1: (33.595,8.204,4.786)
OP2: (35.944,8.257,3.816)
C4: (40.694,11.441,6.531)
O5': (35.486,9.203,6.083)
C3': (34.434,11.793,6.417)
C1': (36.624,12.203,7.180)
O4': (36.070,11.231,8.052)
C5': (34.726,9.421,7.259)
P: (35.057,8.148,4.993)
O2: (38.614,13.905,7.782)
C4': (34.735,10.877,7.608)
C2': (35.811,12.113,5.890)
O2': (35.879,13.292,5.139)
N1: (38.042,11.896,6.983)
N3: (40.339,12.608,7.052)
N4: (41.991,11.195,6.306)
C6: (38.418,10.725,6.429)
C5: (39.708,10.463,6.196)
O3': (33.811,12.992,6.859)
C4: (41.132,14.909,11.597)
N3: (40.858,13.725,10.921)
OP1: (49.181,15.757,9.255)
OP2: (47.541,16.916,10.820)
C2: (41.714,13.056,10.095)
C1': (43.909,13.071,9.062)
C3': (45.690,13.374,7.586)
O5': (46.996,14.693,9.882)
O4': (45.041,12.688,9.772)
C5': (47.309,13.366,9.550)
P: (48.141,15.683,10.313)
C4': (46.171,12.699,8.872)
C2': (44.415,14.052,8.021)
O2': (43.480,14.240,6.990)
N1: (42.961,13.648,9.977)
O4: (40.242,15.416,12.310)
O2: (41.369,12.022,9.556)
C6: (43.298,14.817,10.583)
C5: (42.450,15.445,11.386)
O3': (45.362,12.379,6.632)
N3: (40.858,13.725,10.921)
OP1: (49.181,15.757,9.255)
OP2: (47.541,16.916,10.820)
C2: (41.714,13.056,10.095)
C1': (43.909,13.071,9.062)
C3': (45.690,13.374,7.586)
O5': (46.996,14.693,9.882)
O4': (45.041,12.688,9.772)
C5': (47.309,13.366,9.550)
P: (48.141,15.683,10.313)
C4': (46.171,12.699,8.872)
C2': (44.415,14.052,8.021)
O2': (43.480,14.240,6.990)
N1: (42.961,13.648,9.977)
O4: (40.242,15.416,12.310)
O2: (41.369,12.022,9.556)
C6: (43.298,14.817,10.583)
C5: (42.450,15.445,11.386)
O3': (45.362,12.379,6.632)
Image (generated by PyMOL):