Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1268:1291
Extra
PDB:
ATOM 1 O3' U A 267 39.649 -44.453 125.184 1.00 50.39 O
ATOM 2 P C A 268 39.362 -44.684 123.654 1.00 56.90 P
ATOM 3 OP1 C A 268 40.469 -44.034 122.894 1.00 56.54 O
ATOM 4 OP2 C A 268 37.938 -44.241 123.383 1.00 56.66 O
ATOM 5 O5' C A 268 39.461 -46.275 123.545 1.00 57.19 O
ATOM 6 C5' C A 268 40.697 -46.925 123.336 1.00 57.32 C
ATOM 7 C4' C A 268 40.591 -48.395 123.592 1.00 57.73 C
ATOM 8 O4' C A 268 39.767 -48.631 124.750 1.00 58.16 O
ATOM 9 C3' C A 268 39.904 -49.212 122.528 1.00 57.52 C
ATOM 10 O3' C A 268 40.695 -49.412 121.375 1.00 57.21 O
ATOM 11 C2' C A 268 39.565 -50.484 123.287 1.00 58.07 C
ATOM 12 O2' C A 268 40.715 -51.313 123.471 1.00 58.39 O
ATOM 13 C1' C A 268 39.187 -49.913 124.649 1.00 58.40 C
ATOM 14 N1 C A 268 37.737 -49.802 124.827 1.00 58.38 N
ATOM 15 C2 C A 268 36.994 -50.986 124.800 1.00 58.63 C
ATOM 16 O2 C A 268 37.524 -52.083 124.626 1.00 58.85 O
ATOM 17 N3 C A 268 35.677 -50.944 124.977 1.00 58.64 N
ATOM 18 C4 C A 268 35.093 -49.781 125.193 1.00 58.42 C
ATOM 19 N4 C A 268 33.772 -49.847 125.364 1.00 58.47 N
ATOM 20 C5 C A 268 35.812 -48.545 125.223 1.00 58.17 C
ATOM 21 C6 C A 268 37.132 -48.600 125.044 1.00 58.16 C
ATOM 22 P G A 269 40.211 -48.817 119.950 1.00 56.26 P
ATOM 23 OP1 G A 269 41.319 -49.018 118.985 1.00 56.04 O
ATOM 24 OP2 G A 269 39.738 -47.444 120.191 1.00 56.01 O
ATOM 25 O5' G A 269 38.964 -49.779 119.582 1.00 56.32 O
TER
ATOM 1 O3' C B 290 24.297 -49.537 125.449 1.00 52.29 O
ATOM 2 P U B 291 24.718 -49.619 126.997 1.00 55.86 P
ATOM 3 OP1 U B 291 24.016 -50.776 127.571 1.00 56.35 O
ATOM 4 OP2 U B 291 24.477 -48.290 127.585 1.00 55.78 O
ATOM 5 O5' U B 291 26.287 -49.900 126.926 1.00 55.87 O
ATOM 6 C5' U B 291 26.787 -51.217 126.874 1.00 56.16 C
ATOM 7 C4' U B 291 28.258 -51.248 126.545 1.00 56.03 C
ATOM 8 O4' U B 291 28.562 -50.243 125.547 1.00 55.43 O
ATOM 9 C3' U B 291 29.231 -50.946 127.683 1.00 56.37 C
ATOM 10 O3' U B 291 29.471 -52.061 128.526 1.00 56.96 O
ATOM 11 C2' U B 291 30.466 -50.526 126.920 1.00 56.00 C
ATOM 12 O2' U B 291 31.101 -51.663 126.368 1.00 56.07 O
ATOM 13 C1' U B 291 29.853 -49.721 125.777 1.00 55.39 C
ATOM 14 N1 U B 291 29.731 -48.289 126.138 1.00 55.20 N
ATOM 15 C2 U B 291 30.858 -47.502 126.068 1.00 55.00 C
ATOM 16 O2 U B 291 31.918 -47.940 125.696 1.00 54.97 O
ATOM 17 N3 U B 291 30.704 -46.192 126.452 1.00 54.86 N
ATOM 18 C4 U B 291 29.543 -45.601 126.895 1.00 54.89 C
ATOM 19 O4 U B 291 29.527 -44.417 127.197 1.00 54.77 O
ATOM 20 C5 U B 291 28.429 -46.479 126.945 1.00 55.10 C
ATOM 21 C6 U B 291 28.552 -47.757 126.588 1.00 55.24 C
ATOM 22 P A B 292 29.574 -51.874 130.117 1.00 58.21 P
ATOM 23 OP1 A B 292 28.740 -52.908 130.718 1.00 58.70 O
ATOM 24 OP2 A B 292 29.276 -50.451 130.404 1.00 57.98 O
ATOM 25 O5' A B 292 31.075 -52.181 130.445 1.00 58.43 O
TER
ATOM 2 P C A 268 39.362 -44.684 123.654 1.00 56.90 P
ATOM 3 OP1 C A 268 40.469 -44.034 122.894 1.00 56.54 O
ATOM 4 OP2 C A 268 37.938 -44.241 123.383 1.00 56.66 O
ATOM 5 O5' C A 268 39.461 -46.275 123.545 1.00 57.19 O
ATOM 6 C5' C A 268 40.697 -46.925 123.336 1.00 57.32 C
ATOM 7 C4' C A 268 40.591 -48.395 123.592 1.00 57.73 C
ATOM 8 O4' C A 268 39.767 -48.631 124.750 1.00 58.16 O
ATOM 9 C3' C A 268 39.904 -49.212 122.528 1.00 57.52 C
ATOM 10 O3' C A 268 40.695 -49.412 121.375 1.00 57.21 O
ATOM 11 C2' C A 268 39.565 -50.484 123.287 1.00 58.07 C
ATOM 12 O2' C A 268 40.715 -51.313 123.471 1.00 58.39 O
ATOM 13 C1' C A 268 39.187 -49.913 124.649 1.00 58.40 C
ATOM 14 N1 C A 268 37.737 -49.802 124.827 1.00 58.38 N
ATOM 15 C2 C A 268 36.994 -50.986 124.800 1.00 58.63 C
ATOM 16 O2 C A 268 37.524 -52.083 124.626 1.00 58.85 O
ATOM 17 N3 C A 268 35.677 -50.944 124.977 1.00 58.64 N
ATOM 18 C4 C A 268 35.093 -49.781 125.193 1.00 58.42 C
ATOM 19 N4 C A 268 33.772 -49.847 125.364 1.00 58.47 N
ATOM 20 C5 C A 268 35.812 -48.545 125.223 1.00 58.17 C
ATOM 21 C6 C A 268 37.132 -48.600 125.044 1.00 58.16 C
ATOM 22 P G A 269 40.211 -48.817 119.950 1.00 56.26 P
ATOM 23 OP1 G A 269 41.319 -49.018 118.985 1.00 56.04 O
ATOM 24 OP2 G A 269 39.738 -47.444 120.191 1.00 56.01 O
ATOM 25 O5' G A 269 38.964 -49.779 119.582 1.00 56.32 O
TER
ATOM 1 O3' C B 290 24.297 -49.537 125.449 1.00 52.29 O
ATOM 2 P U B 291 24.718 -49.619 126.997 1.00 55.86 P
ATOM 3 OP1 U B 291 24.016 -50.776 127.571 1.00 56.35 O
ATOM 4 OP2 U B 291 24.477 -48.290 127.585 1.00 55.78 O
ATOM 5 O5' U B 291 26.287 -49.900 126.926 1.00 55.87 O
ATOM 6 C5' U B 291 26.787 -51.217 126.874 1.00 56.16 C
ATOM 7 C4' U B 291 28.258 -51.248 126.545 1.00 56.03 C
ATOM 8 O4' U B 291 28.562 -50.243 125.547 1.00 55.43 O
ATOM 9 C3' U B 291 29.231 -50.946 127.683 1.00 56.37 C
ATOM 10 O3' U B 291 29.471 -52.061 128.526 1.00 56.96 O
ATOM 11 C2' U B 291 30.466 -50.526 126.920 1.00 56.00 C
ATOM 12 O2' U B 291 31.101 -51.663 126.368 1.00 56.07 O
ATOM 13 C1' U B 291 29.853 -49.721 125.777 1.00 55.39 C
ATOM 14 N1 U B 291 29.731 -48.289 126.138 1.00 55.20 N
ATOM 15 C2 U B 291 30.858 -47.502 126.068 1.00 55.00 C
ATOM 16 O2 U B 291 31.918 -47.940 125.696 1.00 54.97 O
ATOM 17 N3 U B 291 30.704 -46.192 126.452 1.00 54.86 N
ATOM 18 C4 U B 291 29.543 -45.601 126.895 1.00 54.89 C
ATOM 19 O4 U B 291 29.527 -44.417 127.197 1.00 54.77 O
ATOM 20 C5 U B 291 28.429 -46.479 126.945 1.00 55.10 C
ATOM 21 C6 U B 291 28.552 -47.757 126.588 1.00 55.24 C
ATOM 22 P A B 292 29.574 -51.874 130.117 1.00 58.21 P
ATOM 23 OP1 A B 292 28.740 -52.908 130.718 1.00 58.70 O
ATOM 24 OP2 A B 292 29.276 -50.451 130.404 1.00 57.98 O
ATOM 25 O5' A B 292 31.075 -52.181 130.445 1.00 58.43 O
TER
Atoms:
C2: (36.994,-50.986,124.800)
OP1: (40.469,-44.034,122.894)
OP2: (37.938,-44.241,123.383)
C4: (35.093,-49.781,125.193)
O5': (39.461,-46.275,123.545)
C3': (39.904,-49.212,122.528)
C1': (39.187,-49.913,124.649)
O4': (39.767,-48.631,124.750)
C5': (40.697,-46.925,123.336)
P: (39.362,-44.684,123.654)
O2: (37.524,-52.083,124.626)
C4': (40.591,-48.395,123.592)
C2': (39.565,-50.484,123.287)
O2': (40.715,-51.313,123.471)
N1: (37.737,-49.802,124.827)
N3: (35.677,-50.944,124.977)
N4: (33.772,-49.847,125.364)
C6: (37.132,-48.600,125.044)
C5: (35.812,-48.545,125.223)
O3': (40.695,-49.412,121.375)
OP1: (40.469,-44.034,122.894)
OP2: (37.938,-44.241,123.383)
C4: (35.093,-49.781,125.193)
O5': (39.461,-46.275,123.545)
C3': (39.904,-49.212,122.528)
C1': (39.187,-49.913,124.649)
O4': (39.767,-48.631,124.750)
C5': (40.697,-46.925,123.336)
P: (39.362,-44.684,123.654)
O2: (37.524,-52.083,124.626)
C4': (40.591,-48.395,123.592)
C2': (39.565,-50.484,123.287)
O2': (40.715,-51.313,123.471)
N1: (37.737,-49.802,124.827)
N3: (35.677,-50.944,124.977)
N4: (33.772,-49.847,125.364)
C6: (37.132,-48.600,125.044)
C5: (35.812,-48.545,125.223)
O3': (40.695,-49.412,121.375)
C4: (29.543,-45.601,126.895)
N3: (30.704,-46.192,126.452)
OP1: (24.016,-50.776,127.571)
OP2: (24.477,-48.290,127.585)
C2: (30.858,-47.502,126.068)
C1': (29.853,-49.721,125.777)
C3': (29.231,-50.946,127.683)
O5': (26.287,-49.900,126.926)
O4': (28.562,-50.243,125.547)
C5': (26.787,-51.217,126.874)
P: (24.718,-49.619,126.997)
C4': (28.258,-51.248,126.545)
C2': (30.466,-50.526,126.920)
O2': (31.101,-51.663,126.368)
N1: (29.731,-48.289,126.138)
O4: (29.527,-44.417,127.197)
O2: (31.918,-47.940,125.696)
C6: (28.552,-47.757,126.588)
C5: (28.429,-46.479,126.945)
O3': (29.471,-52.061,128.526)
N3: (30.704,-46.192,126.452)
OP1: (24.016,-50.776,127.571)
OP2: (24.477,-48.290,127.585)
C2: (30.858,-47.502,126.068)
C1': (29.853,-49.721,125.777)
C3': (29.231,-50.946,127.683)
O5': (26.287,-49.900,126.926)
O4': (28.562,-50.243,125.547)
C5': (26.787,-51.217,126.874)
P: (24.718,-49.619,126.997)
C4': (28.258,-51.248,126.545)
C2': (30.466,-50.526,126.920)
O2': (31.101,-51.663,126.368)
N1: (29.731,-48.289,126.138)
O4: (29.527,-44.417,127.197)
O2: (31.918,-47.940,125.696)
C6: (28.552,-47.757,126.588)
C5: (28.429,-46.479,126.945)
O3': (29.471,-52.061,128.526)
Image (generated by PyMOL):