Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1516:1462
Extra
PDB:
ATOM 1 O3' U A 515 74.215 -11.455 -10.612 1.00 65.49 O
ATOM 2 P A A 516 74.454 -12.003 -9.134 1.00 59.79 P
ATOM 3 OP1 A A 516 75.249 -10.954 -8.418 1.00 59.48 O
ATOM 4 OP2 A A 516 75.019 -13.389 -9.280 1.00 59.99 O
ATOM 5 O5' A A 516 72.984 -12.082 -8.510 1.00 59.38 O
ATOM 6 C5' A A 516 72.097 -10.976 -8.542 1.00 59.26 C
ATOM 7 C4' A A 516 70.680 -11.438 -8.438 1.00 59.13 C
ATOM 8 O4' A A 516 70.429 -12.414 -9.472 1.00 59.63 O
ATOM 9 C3' A A 516 70.322 -12.178 -7.161 1.00 58.58 C
ATOM 10 O3' A A 516 70.078 -11.315 -6.072 1.00 58.04 O
ATOM 11 C2' A A 516 69.109 -13.004 -7.578 1.00 58.73 C
ATOM 12 O2' A A 516 67.924 -12.220 -7.588 1.00 58.61 O
ATOM 13 C1' A A 516 69.466 -13.349 -9.023 1.00 59.42 C
ATOM 14 N9 A A 516 70.004 -14.729 -9.160 1.00 59.61 N
ATOM 15 C8 A A 516 71.240 -15.200 -9.549 1.00 59.92 C
ATOM 16 N7 A A 516 71.324 -16.514 -9.579 1.00 60.05 N
ATOM 17 C5 A A 516 70.058 -16.930 -9.191 1.00 59.81 C
ATOM 18 C6 A A 516 69.500 -18.190 -9.026 1.00 59.81 C
ATOM 19 N6 A A 516 70.153 -19.330 -9.218 1.00 60.06 N
ATOM 20 N1 A A 516 68.214 -18.226 -8.637 1.00 59.55 N
ATOM 21 C2 A A 516 67.528 -17.100 -8.434 1.00 59.31 C
ATOM 22 N3 A A 516 67.937 -15.851 -8.548 1.00 59.28 N
ATOM 23 C4 A A 516 69.232 -15.850 -8.935 1.00 59.54 C
ATOM 24 P C A 517 70.576 -11.705 -4.592 1.00 54.78 P
ATOM 25 OP1 C A 517 70.136 -10.606 -3.681 1.00 54.31 O
ATOM 26 OP2 C A 517 72.032 -12.016 -4.670 1.00 54.95 O
ATOM 27 O5' C A 517 69.747 -13.046 -4.303 1.00 54.67 O
TER
ATOM 1 O3' G B 461 71.446 -29.250 -7.953 1.00 58.36 O
ATOM 2 P G B 462 70.870 -29.507 -9.437 1.00 62.29 P
ATOM 3 OP1 G B 462 70.502 -30.943 -9.520 1.00 62.55 O
ATOM 4 OP2 G B 462 71.855 -28.965 -10.401 1.00 62.73 O
ATOM 5 O5' G B 462 69.557 -28.619 -9.428 1.00 62.04 O
ATOM 6 C5' G B 462 68.660 -28.699 -8.335 1.00 61.49 C
ATOM 7 C4' G B 462 67.625 -27.622 -8.389 1.00 61.27 C
ATOM 8 O4' G B 462 68.244 -26.356 -8.051 1.00 60.97 O
ATOM 9 C3' G B 462 66.954 -27.428 -9.756 1.00 61.83 C
ATOM 10 O3' G B 462 65.551 -27.210 -9.589 1.00 61.64 O
ATOM 11 C2' G B 462 67.596 -26.145 -10.260 1.00 61.91 C
ATOM 12 O2' G B 462 66.800 -25.409 -11.152 1.00 62.18 O
ATOM 13 C1' G B 462 67.815 -25.391 -8.963 1.00 61.22 C
ATOM 14 N9 G B 462 68.802 -24.310 -9.065 1.00 61.19 N
ATOM 15 C8 G B 462 68.580 -23.012 -8.686 1.00 60.83 C
ATOM 16 N7 G B 462 69.537 -22.188 -8.946 1.00 60.92 N
ATOM 17 C5 G B 462 70.450 -22.990 -9.568 1.00 61.37 C
ATOM 18 C6 G B 462 71.699 -22.631 -10.093 1.00 61.66 C
ATOM 19 O6 G B 462 72.238 -21.520 -10.103 1.00 61.58 O
ATOM 20 N1 G B 462 72.337 -23.718 -10.661 1.00 62.12 N
ATOM 21 C2 G B 462 71.843 -24.982 -10.722 1.00 62.28 C
ATOM 22 N2 G B 462 72.657 -25.856 -11.321 1.00 62.75 N
ATOM 23 N3 G B 462 70.676 -25.338 -10.232 1.00 62.00 N
ATOM 24 C4 G B 462 70.030 -24.294 -9.674 1.00 61.55 C
ATOM 25 P A B 463 64.499 -28.426 -9.629 1.00 53.71 P
ATOM 26 OP1 A B 463 63.243 -27.924 -9.029 1.00 53.29 O
ATOM 27 OP2 A B 463 65.163 -29.607 -9.024 1.00 53.65 O
ATOM 28 O5' A B 463 64.293 -28.673 -11.184 1.00 54.47 O
TER
ATOM 2 P A A 516 74.454 -12.003 -9.134 1.00 59.79 P
ATOM 3 OP1 A A 516 75.249 -10.954 -8.418 1.00 59.48 O
ATOM 4 OP2 A A 516 75.019 -13.389 -9.280 1.00 59.99 O
ATOM 5 O5' A A 516 72.984 -12.082 -8.510 1.00 59.38 O
ATOM 6 C5' A A 516 72.097 -10.976 -8.542 1.00 59.26 C
ATOM 7 C4' A A 516 70.680 -11.438 -8.438 1.00 59.13 C
ATOM 8 O4' A A 516 70.429 -12.414 -9.472 1.00 59.63 O
ATOM 9 C3' A A 516 70.322 -12.178 -7.161 1.00 58.58 C
ATOM 10 O3' A A 516 70.078 -11.315 -6.072 1.00 58.04 O
ATOM 11 C2' A A 516 69.109 -13.004 -7.578 1.00 58.73 C
ATOM 12 O2' A A 516 67.924 -12.220 -7.588 1.00 58.61 O
ATOM 13 C1' A A 516 69.466 -13.349 -9.023 1.00 59.42 C
ATOM 14 N9 A A 516 70.004 -14.729 -9.160 1.00 59.61 N
ATOM 15 C8 A A 516 71.240 -15.200 -9.549 1.00 59.92 C
ATOM 16 N7 A A 516 71.324 -16.514 -9.579 1.00 60.05 N
ATOM 17 C5 A A 516 70.058 -16.930 -9.191 1.00 59.81 C
ATOM 18 C6 A A 516 69.500 -18.190 -9.026 1.00 59.81 C
ATOM 19 N6 A A 516 70.153 -19.330 -9.218 1.00 60.06 N
ATOM 20 N1 A A 516 68.214 -18.226 -8.637 1.00 59.55 N
ATOM 21 C2 A A 516 67.528 -17.100 -8.434 1.00 59.31 C
ATOM 22 N3 A A 516 67.937 -15.851 -8.548 1.00 59.28 N
ATOM 23 C4 A A 516 69.232 -15.850 -8.935 1.00 59.54 C
ATOM 24 P C A 517 70.576 -11.705 -4.592 1.00 54.78 P
ATOM 25 OP1 C A 517 70.136 -10.606 -3.681 1.00 54.31 O
ATOM 26 OP2 C A 517 72.032 -12.016 -4.670 1.00 54.95 O
ATOM 27 O5' C A 517 69.747 -13.046 -4.303 1.00 54.67 O
TER
ATOM 1 O3' G B 461 71.446 -29.250 -7.953 1.00 58.36 O
ATOM 2 P G B 462 70.870 -29.507 -9.437 1.00 62.29 P
ATOM 3 OP1 G B 462 70.502 -30.943 -9.520 1.00 62.55 O
ATOM 4 OP2 G B 462 71.855 -28.965 -10.401 1.00 62.73 O
ATOM 5 O5' G B 462 69.557 -28.619 -9.428 1.00 62.04 O
ATOM 6 C5' G B 462 68.660 -28.699 -8.335 1.00 61.49 C
ATOM 7 C4' G B 462 67.625 -27.622 -8.389 1.00 61.27 C
ATOM 8 O4' G B 462 68.244 -26.356 -8.051 1.00 60.97 O
ATOM 9 C3' G B 462 66.954 -27.428 -9.756 1.00 61.83 C
ATOM 10 O3' G B 462 65.551 -27.210 -9.589 1.00 61.64 O
ATOM 11 C2' G B 462 67.596 -26.145 -10.260 1.00 61.91 C
ATOM 12 O2' G B 462 66.800 -25.409 -11.152 1.00 62.18 O
ATOM 13 C1' G B 462 67.815 -25.391 -8.963 1.00 61.22 C
ATOM 14 N9 G B 462 68.802 -24.310 -9.065 1.00 61.19 N
ATOM 15 C8 G B 462 68.580 -23.012 -8.686 1.00 60.83 C
ATOM 16 N7 G B 462 69.537 -22.188 -8.946 1.00 60.92 N
ATOM 17 C5 G B 462 70.450 -22.990 -9.568 1.00 61.37 C
ATOM 18 C6 G B 462 71.699 -22.631 -10.093 1.00 61.66 C
ATOM 19 O6 G B 462 72.238 -21.520 -10.103 1.00 61.58 O
ATOM 20 N1 G B 462 72.337 -23.718 -10.661 1.00 62.12 N
ATOM 21 C2 G B 462 71.843 -24.982 -10.722 1.00 62.28 C
ATOM 22 N2 G B 462 72.657 -25.856 -11.321 1.00 62.75 N
ATOM 23 N3 G B 462 70.676 -25.338 -10.232 1.00 62.00 N
ATOM 24 C4 G B 462 70.030 -24.294 -9.674 1.00 61.55 C
ATOM 25 P A B 463 64.499 -28.426 -9.629 1.00 53.71 P
ATOM 26 OP1 A B 463 63.243 -27.924 -9.029 1.00 53.29 O
ATOM 27 OP2 A B 463 65.163 -29.607 -9.024 1.00 53.65 O
ATOM 28 O5' A B 463 64.293 -28.673 -11.184 1.00 54.47 O
TER
Atoms:
OP1: (75.249,-10.954,-8.418)
OP2: (75.019,-13.389,-9.280)
C3': (70.322,-12.178,-7.161)
C1': (69.466,-13.349,-9.023)
C5': (72.097,-10.976,-8.542)
O4': (70.429,-12.414,-9.472)
C8: (71.240,-15.200,-9.549)
O2': (67.924,-12.220,-7.588)
C6: (69.500,-18.190,-9.026)
C5: (70.058,-16.930,-9.191)
C4: (69.232,-15.850,-8.935)
P: (74.454,-12.003,-9.134)
C4': (70.680,-11.438,-8.438)
C2': (69.109,-13.004,-7.578)
C2: (67.528,-17.100,-8.434)
N1: (68.214,-18.226,-8.637)
N3: (67.937,-15.851,-8.548)
N6: (70.153,-19.330,-9.218)
N7: (71.324,-16.514,-9.579)
N9: (70.004,-14.729,-9.160)
O5': (72.984,-12.082,-8.510)
O3': (70.078,-11.315,-6.072)
OP2: (75.019,-13.389,-9.280)
C3': (70.322,-12.178,-7.161)
C1': (69.466,-13.349,-9.023)
C5': (72.097,-10.976,-8.542)
O4': (70.429,-12.414,-9.472)
C8: (71.240,-15.200,-9.549)
O2': (67.924,-12.220,-7.588)
C6: (69.500,-18.190,-9.026)
C5: (70.058,-16.930,-9.191)
C4: (69.232,-15.850,-8.935)
P: (74.454,-12.003,-9.134)
C4': (70.680,-11.438,-8.438)
C2': (69.109,-13.004,-7.578)
C2: (67.528,-17.100,-8.434)
N1: (68.214,-18.226,-8.637)
N3: (67.937,-15.851,-8.548)
N6: (70.153,-19.330,-9.218)
N7: (71.324,-16.514,-9.579)
N9: (70.004,-14.729,-9.160)
O5': (72.984,-12.082,-8.510)
O3': (70.078,-11.315,-6.072)
OP1: (70.502,-30.943,-9.520)
OP2: (71.855,-28.965,-10.401)
C3': (66.954,-27.428,-9.756)
C1': (67.815,-25.391,-8.963)
C5': (68.660,-28.699,-8.335)
O6: (72.238,-21.520,-10.103)
O4': (68.244,-26.356,-8.051)
C8: (68.580,-23.012,-8.686)
C2: (71.843,-24.982,-10.722)
C6: (71.699,-22.631,-10.093)
C5: (70.450,-22.990,-9.568)
C4: (70.030,-24.294,-9.674)
P: (70.870,-29.507,-9.437)
C4': (67.625,-27.622,-8.389)
C2': (67.596,-26.145,-10.260)
O2': (66.800,-25.409,-11.152)
N1: (72.337,-23.718,-10.661)
N2: (72.657,-25.856,-11.321)
N3: (70.676,-25.338,-10.232)
N7: (69.537,-22.188,-8.946)
N9: (68.802,-24.310,-9.065)
O5': (69.557,-28.619,-9.428)
O3': (65.551,-27.210,-9.589)
OP2: (71.855,-28.965,-10.401)
C3': (66.954,-27.428,-9.756)
C1': (67.815,-25.391,-8.963)
C5': (68.660,-28.699,-8.335)
O6: (72.238,-21.520,-10.103)
O4': (68.244,-26.356,-8.051)
C8: (68.580,-23.012,-8.686)
C2: (71.843,-24.982,-10.722)
C6: (71.699,-22.631,-10.093)
C5: (70.450,-22.990,-9.568)
C4: (70.030,-24.294,-9.674)
P: (70.870,-29.507,-9.437)
C4': (67.625,-27.622,-8.389)
C2': (67.596,-26.145,-10.260)
O2': (66.800,-25.409,-11.152)
N1: (72.337,-23.718,-10.661)
N2: (72.657,-25.856,-11.321)
N3: (70.676,-25.338,-10.232)
N7: (69.537,-22.188,-8.946)
N9: (68.802,-24.310,-9.065)
O5': (69.557,-28.619,-9.428)
O3': (65.551,-27.210,-9.589)
Image (generated by PyMOL):