Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B63:B20
Extra
PDB:
ATOM 1 O3' G A 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 2 P U A 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U A 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U A 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U A 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U A 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U A 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U A 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U A 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U A 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U A 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U A 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U A 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U A 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U A 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U A 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U A 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U A 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U A 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U A 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U A 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G A 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G A 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G A 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G A 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 1 O3' C B 19 -27.111 48.829 13.407 1.00 81.00 O
ATOM 2 P U B 20 -26.410 47.454 13.845 1.00 79.47 P
ATOM 3 OP1 U B 20 -26.836 46.423 12.865 1.00 78.67 O
ATOM 4 OP2 U B 20 -26.642 47.237 15.303 1.00 77.90 O
ATOM 5 O5' U B 20 -24.862 47.755 13.643 1.00 77.00 O
ATOM 6 C5' U B 20 -24.403 48.340 12.437 1.00 74.37 C
ATOM 7 C4' U B 20 -22.963 48.756 12.574 1.00 73.19 C
ATOM 8 O4' U B 20 -22.856 49.843 13.535 1.00 73.73 O
ATOM 9 C3' U B 20 -21.975 47.675 13.011 1.00 72.36 C
ATOM 10 O3' U B 20 -20.781 47.773 12.241 1.00 71.33 O
ATOM 11 C2' U B 20 -21.679 48.032 14.467 1.00 72.08 C
ATOM 12 O2' U B 20 -20.372 47.664 14.888 1.00 70.92 O
ATOM 13 C1' U B 20 -21.824 49.553 14.449 1.00 71.99 C
ATOM 14 N1 U B 20 -22.152 50.115 15.767 1.00 70.43 N
ATOM 15 C2 U B 20 -21.218 50.969 16.342 1.00 69.66 C
ATOM 16 O2 U B 20 -20.193 51.328 15.769 1.00 69.77 O
ATOM 17 N3 U B 20 -21.525 51.387 17.614 1.00 68.53 N
ATOM 18 C4 U B 20 -22.656 51.051 18.341 1.00 68.09 C
ATOM 19 O4 U B 20 -22.781 51.491 19.484 1.00 69.54 O
ATOM 20 C5 U B 20 -23.582 50.201 17.665 1.00 68.54 C
ATOM 21 C6 U B 20 -23.312 49.778 16.429 1.00 69.89 C
ATOM 22 P C B 21 -20.220 46.475 11.486 1.00 70.04 P
ATOM 23 OP1 C B 21 -19.452 46.933 10.302 1.00 68.27 O
ATOM 24 OP2 C B 21 -21.366 45.536 11.324 1.00 68.52 O
ATOM 25 O5' C B 21 -19.183 45.825 12.501 1.00 69.57 O
TER
ATOM 2 P U A 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U A 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U A 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U A 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U A 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U A 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U A 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U A 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U A 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U A 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U A 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U A 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U A 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U A 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U A 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U A 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U A 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U A 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U A 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U A 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G A 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G A 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G A 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G A 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 1 O3' C B 19 -27.111 48.829 13.407 1.00 81.00 O
ATOM 2 P U B 20 -26.410 47.454 13.845 1.00 79.47 P
ATOM 3 OP1 U B 20 -26.836 46.423 12.865 1.00 78.67 O
ATOM 4 OP2 U B 20 -26.642 47.237 15.303 1.00 77.90 O
ATOM 5 O5' U B 20 -24.862 47.755 13.643 1.00 77.00 O
ATOM 6 C5' U B 20 -24.403 48.340 12.437 1.00 74.37 C
ATOM 7 C4' U B 20 -22.963 48.756 12.574 1.00 73.19 C
ATOM 8 O4' U B 20 -22.856 49.843 13.535 1.00 73.73 O
ATOM 9 C3' U B 20 -21.975 47.675 13.011 1.00 72.36 C
ATOM 10 O3' U B 20 -20.781 47.773 12.241 1.00 71.33 O
ATOM 11 C2' U B 20 -21.679 48.032 14.467 1.00 72.08 C
ATOM 12 O2' U B 20 -20.372 47.664 14.888 1.00 70.92 O
ATOM 13 C1' U B 20 -21.824 49.553 14.449 1.00 71.99 C
ATOM 14 N1 U B 20 -22.152 50.115 15.767 1.00 70.43 N
ATOM 15 C2 U B 20 -21.218 50.969 16.342 1.00 69.66 C
ATOM 16 O2 U B 20 -20.193 51.328 15.769 1.00 69.77 O
ATOM 17 N3 U B 20 -21.525 51.387 17.614 1.00 68.53 N
ATOM 18 C4 U B 20 -22.656 51.051 18.341 1.00 68.09 C
ATOM 19 O4 U B 20 -22.781 51.491 19.484 1.00 69.54 O
ATOM 20 C5 U B 20 -23.582 50.201 17.665 1.00 68.54 C
ATOM 21 C6 U B 20 -23.312 49.778 16.429 1.00 69.89 C
ATOM 22 P C B 21 -20.220 46.475 11.486 1.00 70.04 P
ATOM 23 OP1 C B 21 -19.452 46.933 10.302 1.00 68.27 O
ATOM 24 OP2 C B 21 -21.366 45.536 11.324 1.00 68.52 O
ATOM 25 O5' C B 21 -19.183 45.825 12.501 1.00 69.57 O
TER
Atoms:
C4: (-19.082,51.996,11.594)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
C4: (-22.656,51.051,18.341)
N3: (-21.525,51.387,17.614)
OP1: (-26.836,46.423,12.865)
OP2: (-26.642,47.237,15.303)
C2: (-21.218,50.969,16.342)
C1': (-21.824,49.553,14.449)
C3': (-21.975,47.675,13.011)
O5': (-24.862,47.755,13.643)
O4': (-22.856,49.843,13.535)
C5': (-24.403,48.340,12.437)
P: (-26.410,47.454,13.845)
C4': (-22.963,48.756,12.574)
C2': (-21.679,48.032,14.467)
O2': (-20.372,47.664,14.888)
N1: (-22.152,50.115,15.767)
O4: (-22.781,51.491,19.484)
O2: (-20.193,51.328,15.769)
C6: (-23.312,49.778,16.429)
C5: (-23.582,50.201,17.665)
O3': (-20.781,47.773,12.241)
N3: (-21.525,51.387,17.614)
OP1: (-26.836,46.423,12.865)
OP2: (-26.642,47.237,15.303)
C2: (-21.218,50.969,16.342)
C1': (-21.824,49.553,14.449)
C3': (-21.975,47.675,13.011)
O5': (-24.862,47.755,13.643)
O4': (-22.856,49.843,13.535)
C5': (-24.403,48.340,12.437)
P: (-26.410,47.454,13.845)
C4': (-22.963,48.756,12.574)
C2': (-21.679,48.032,14.467)
O2': (-20.372,47.664,14.888)
N1: (-22.152,50.115,15.767)
O4: (-22.781,51.491,19.484)
O2: (-20.193,51.328,15.769)
C6: (-23.312,49.778,16.429)
C5: (-23.582,50.201,17.665)
O3': (-20.781,47.773,12.241)
Image (generated by PyMOL):