Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2G:A39:A38
Extra
PDB:
ATOM 1 O3' U A 38 -17.079 -0.838 13.355 1.00 45.56 O
ATOM 2 P U A 39 -17.418 0.733 13.520 1.00 35.53 P
ATOM 3 OP1 U A 39 -16.934 1.013 14.889 1.00 30.76 O
ATOM 4 OP2 U A 39 -18.840 0.750 13.085 1.00 43.15 O
ATOM 5 O5' U A 39 -16.558 1.494 12.417 1.00 33.66 O
ATOM 6 C5' U A 39 -15.143 1.644 12.656 1.00 38.72 C
ATOM 7 C4' U A 39 -14.537 1.764 11.254 1.00 40.77 C
ATOM 8 O4' U A 39 -14.692 0.425 10.731 1.00 39.59 O
ATOM 9 C3' U A 39 -15.337 2.608 10.273 1.00 45.94 C
ATOM 10 O3' U A 39 -14.563 3.554 9.450 1.00 45.97 O
ATOM 11 C2' U A 39 -16.058 1.585 9.392 1.00 39.10 C
ATOM 12 O2' U A 39 -16.204 2.122 8.095 1.00 42.21 O
ATOM 13 C1' U A 39 -15.067 0.452 9.363 1.00 36.80 C
ATOM 14 N1 U A 39 -15.800 -0.795 9.006 1.00 34.66 N
ATOM 15 C2 U A 39 -15.855 -1.190 7.696 1.00 36.27 C
ATOM 16 O2 U A 39 -15.271 -0.590 6.809 1.00 39.22 O
ATOM 17 N3 U A 39 -16.591 -2.323 7.458 1.00 26.64 N
ATOM 18 C4 U A 39 -17.295 -3.014 8.410 1.00 33.97 C
ATOM 19 O4 U A 39 -17.907 -4.012 8.050 1.00 41.01 O
ATOM 20 C5 U A 39 -17.218 -2.565 9.762 1.00 34.72 C
ATOM 21 C6 U A 39 -16.473 -1.482 9.998 1.00 36.34 C
ATOM 22 P U A 40 -14.233 4.978 10.099 1.00 57.91 P
ATOM 23 OP1 U A 40 -15.501 5.609 10.526 1.00 57.01 O
ATOM 24 OP2 U A 40 -13.390 5.624 9.094 1.00 61.41 O
ATOM 25 O5' U A 40 -13.358 4.750 11.430 1.00 48.08 O
TER
ATOM 1 O3' C B 37 -13.852 -3.374 17.815 1.00 40.03 O
ATOM 2 P U B 38 -14.647 -2.008 17.715 1.00 38.73 P
ATOM 3 OP1 U B 38 -13.606 -1.098 17.237 1.00 36.79 O
ATOM 4 OP2 U B 38 -15.354 -1.836 19.052 1.00 40.61 O
ATOM 5 O5' U B 38 -15.710 -2.194 16.530 1.00 39.50 O
ATOM 6 C5' U B 38 -15.239 -2.451 15.202 1.00 38.63 C
ATOM 7 C4' U B 38 -16.435 -2.775 14.315 1.00 39.51 C
ATOM 8 O4' U B 38 -17.169 -3.881 14.868 1.00 38.38 O
ATOM 9 C3' U B 38 -17.482 -1.679 14.349 1.00 35.39 C
ATOM 10 O3' U B 38 -17.079 -0.838 13.355 1.00 45.56 O
ATOM 11 C2' U B 38 -18.741 -2.410 13.898 1.00 37.69 C
ATOM 12 O2' U B 38 -18.714 -2.657 12.509 1.00 39.46 O
ATOM 13 C1' U B 38 -18.565 -3.756 14.549 1.00 35.76 C
ATOM 14 N1 U B 38 -19.410 -3.920 15.797 1.00 33.23 N
ATOM 15 C2 U B 38 -20.741 -4.257 15.688 1.00 35.06 C
ATOM 16 O2 U B 38 -21.276 -4.384 14.628 1.00 38.10 O
ATOM 17 N3 U B 38 -21.416 -4.400 16.856 1.00 35.25 N
ATOM 18 C4 U B 38 -20.845 -4.247 18.107 1.00 38.23 C
ATOM 19 O4 U B 38 -21.518 -4.374 19.113 1.00 44.09 O
ATOM 20 C5 U B 38 -19.450 -3.935 18.160 1.00 34.67 C
ATOM 21 C6 U B 38 -18.791 -3.774 17.009 1.00 34.69 C
ATOM 22 P U B 39 -17.418 0.733 13.520 1.00 35.53 P
ATOM 23 OP1 U B 39 -16.934 1.013 14.889 1.00 30.76 O
ATOM 24 OP2 U B 39 -18.840 0.750 13.085 1.00 43.15 O
ATOM 25 O5' U B 39 -16.558 1.494 12.417 1.00 33.66 O
TER
ATOM 2 P U A 39 -17.418 0.733 13.520 1.00 35.53 P
ATOM 3 OP1 U A 39 -16.934 1.013 14.889 1.00 30.76 O
ATOM 4 OP2 U A 39 -18.840 0.750 13.085 1.00 43.15 O
ATOM 5 O5' U A 39 -16.558 1.494 12.417 1.00 33.66 O
ATOM 6 C5' U A 39 -15.143 1.644 12.656 1.00 38.72 C
ATOM 7 C4' U A 39 -14.537 1.764 11.254 1.00 40.77 C
ATOM 8 O4' U A 39 -14.692 0.425 10.731 1.00 39.59 O
ATOM 9 C3' U A 39 -15.337 2.608 10.273 1.00 45.94 C
ATOM 10 O3' U A 39 -14.563 3.554 9.450 1.00 45.97 O
ATOM 11 C2' U A 39 -16.058 1.585 9.392 1.00 39.10 C
ATOM 12 O2' U A 39 -16.204 2.122 8.095 1.00 42.21 O
ATOM 13 C1' U A 39 -15.067 0.452 9.363 1.00 36.80 C
ATOM 14 N1 U A 39 -15.800 -0.795 9.006 1.00 34.66 N
ATOM 15 C2 U A 39 -15.855 -1.190 7.696 1.00 36.27 C
ATOM 16 O2 U A 39 -15.271 -0.590 6.809 1.00 39.22 O
ATOM 17 N3 U A 39 -16.591 -2.323 7.458 1.00 26.64 N
ATOM 18 C4 U A 39 -17.295 -3.014 8.410 1.00 33.97 C
ATOM 19 O4 U A 39 -17.907 -4.012 8.050 1.00 41.01 O
ATOM 20 C5 U A 39 -17.218 -2.565 9.762 1.00 34.72 C
ATOM 21 C6 U A 39 -16.473 -1.482 9.998 1.00 36.34 C
ATOM 22 P U A 40 -14.233 4.978 10.099 1.00 57.91 P
ATOM 23 OP1 U A 40 -15.501 5.609 10.526 1.00 57.01 O
ATOM 24 OP2 U A 40 -13.390 5.624 9.094 1.00 61.41 O
ATOM 25 O5' U A 40 -13.358 4.750 11.430 1.00 48.08 O
TER
ATOM 1 O3' C B 37 -13.852 -3.374 17.815 1.00 40.03 O
ATOM 2 P U B 38 -14.647 -2.008 17.715 1.00 38.73 P
ATOM 3 OP1 U B 38 -13.606 -1.098 17.237 1.00 36.79 O
ATOM 4 OP2 U B 38 -15.354 -1.836 19.052 1.00 40.61 O
ATOM 5 O5' U B 38 -15.710 -2.194 16.530 1.00 39.50 O
ATOM 6 C5' U B 38 -15.239 -2.451 15.202 1.00 38.63 C
ATOM 7 C4' U B 38 -16.435 -2.775 14.315 1.00 39.51 C
ATOM 8 O4' U B 38 -17.169 -3.881 14.868 1.00 38.38 O
ATOM 9 C3' U B 38 -17.482 -1.679 14.349 1.00 35.39 C
ATOM 10 O3' U B 38 -17.079 -0.838 13.355 1.00 45.56 O
ATOM 11 C2' U B 38 -18.741 -2.410 13.898 1.00 37.69 C
ATOM 12 O2' U B 38 -18.714 -2.657 12.509 1.00 39.46 O
ATOM 13 C1' U B 38 -18.565 -3.756 14.549 1.00 35.76 C
ATOM 14 N1 U B 38 -19.410 -3.920 15.797 1.00 33.23 N
ATOM 15 C2 U B 38 -20.741 -4.257 15.688 1.00 35.06 C
ATOM 16 O2 U B 38 -21.276 -4.384 14.628 1.00 38.10 O
ATOM 17 N3 U B 38 -21.416 -4.400 16.856 1.00 35.25 N
ATOM 18 C4 U B 38 -20.845 -4.247 18.107 1.00 38.23 C
ATOM 19 O4 U B 38 -21.518 -4.374 19.113 1.00 44.09 O
ATOM 20 C5 U B 38 -19.450 -3.935 18.160 1.00 34.67 C
ATOM 21 C6 U B 38 -18.791 -3.774 17.009 1.00 34.69 C
ATOM 22 P U B 39 -17.418 0.733 13.520 1.00 35.53 P
ATOM 23 OP1 U B 39 -16.934 1.013 14.889 1.00 30.76 O
ATOM 24 OP2 U B 39 -18.840 0.750 13.085 1.00 43.15 O
ATOM 25 O5' U B 39 -16.558 1.494 12.417 1.00 33.66 O
TER
Atoms:
C4: (-17.295,-3.014,8.410)
N3: (-16.591,-2.323,7.458)
OP1: (-16.934,1.013,14.889)
OP2: (-18.840,0.750,13.085)
C2: (-15.855,-1.190,7.696)
C1': (-15.067,0.452,9.363)
C3': (-15.337,2.608,10.273)
O5': (-16.558,1.494,12.417)
O4': (-14.692,0.425,10.731)
C5': (-15.143,1.644,12.656)
P: (-17.418,0.733,13.520)
C4': (-14.537,1.764,11.254)
C2': (-16.058,1.585,9.392)
O2': (-16.204,2.122,8.095)
N1: (-15.800,-0.795,9.006)
O4: (-17.907,-4.012,8.050)
O2: (-15.271,-0.590,6.809)
C6: (-16.473,-1.482,9.998)
C5: (-17.218,-2.565,9.762)
O3': (-14.563,3.554,9.450)
N3: (-16.591,-2.323,7.458)
OP1: (-16.934,1.013,14.889)
OP2: (-18.840,0.750,13.085)
C2: (-15.855,-1.190,7.696)
C1': (-15.067,0.452,9.363)
C3': (-15.337,2.608,10.273)
O5': (-16.558,1.494,12.417)
O4': (-14.692,0.425,10.731)
C5': (-15.143,1.644,12.656)
P: (-17.418,0.733,13.520)
C4': (-14.537,1.764,11.254)
C2': (-16.058,1.585,9.392)
O2': (-16.204,2.122,8.095)
N1: (-15.800,-0.795,9.006)
O4: (-17.907,-4.012,8.050)
O2: (-15.271,-0.590,6.809)
C6: (-16.473,-1.482,9.998)
C5: (-17.218,-2.565,9.762)
O3': (-14.563,3.554,9.450)
C4: (-20.845,-4.247,18.107)
N3: (-21.416,-4.400,16.856)
OP1: (-13.606,-1.098,17.237)
OP2: (-15.354,-1.836,19.052)
C2: (-20.741,-4.257,15.688)
C1': (-18.565,-3.756,14.549)
C3': (-17.482,-1.679,14.349)
O5': (-15.710,-2.194,16.530)
O4': (-17.169,-3.881,14.868)
C5': (-15.239,-2.451,15.202)
P: (-14.647,-2.008,17.715)
C4': (-16.435,-2.775,14.315)
C2': (-18.741,-2.410,13.898)
O2': (-18.714,-2.657,12.509)
N1: (-19.410,-3.920,15.797)
O4: (-21.518,-4.374,19.113)
O2: (-21.276,-4.384,14.628)
C6: (-18.791,-3.774,17.009)
C5: (-19.450,-3.935,18.160)
O3': (-17.079,-0.838,13.355)
N3: (-21.416,-4.400,16.856)
OP1: (-13.606,-1.098,17.237)
OP2: (-15.354,-1.836,19.052)
C2: (-20.741,-4.257,15.688)
C1': (-18.565,-3.756,14.549)
C3': (-17.482,-1.679,14.349)
O5': (-15.710,-2.194,16.530)
O4': (-17.169,-3.881,14.868)
C5': (-15.239,-2.451,15.202)
P: (-14.647,-2.008,17.715)
C4': (-16.435,-2.775,14.315)
C2': (-18.741,-2.410,13.898)
O2': (-18.714,-2.657,12.509)
N1: (-19.410,-3.920,15.797)
O4: (-21.518,-4.374,19.113)
O2: (-21.276,-4.384,14.628)
C6: (-18.791,-3.774,17.009)
C5: (-19.450,-3.935,18.160)
O3': (-17.079,-0.838,13.355)
Image (generated by PyMOL):