Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12128:11939
Extra
PDB:
ATOM 1 O3' A A2127 -14.771 22.520 90.055 1.00 47.07 O
ATOM 2 P A A2128 -13.477 23.183 89.368 1.00 47.41 P
ATOM 3 OP1 A A2128 -13.795 24.627 89.142 1.00 47.80 O
ATOM 4 OP2 A A2128 -13.094 22.325 88.181 1.00 46.99 O
ATOM 5 O5' A A2128 -12.387 23.059 90.505 1.00 47.26 O
ATOM 6 C5' A A2128 -12.556 23.731 91.737 1.00 47.62 C
ATOM 7 C4' A A2128 -11.468 23.356 92.689 1.00 47.40 C
ATOM 8 O4' A A2128 -11.631 21.973 93.085 1.00 47.19 O
ATOM 9 C3' A A2128 -10.067 23.406 92.127 1.00 47.00 C
ATOM 10 O3' A A2128 -9.541 24.721 92.101 1.00 47.19 O
ATOM 11 C2' A A2128 -9.337 22.471 93.051 1.00 46.76 C
ATOM 12 O2' A A2128 -9.112 23.095 94.306 1.00 47.04 O
ATOM 13 C1' A A2128 -10.385 21.372 93.235 1.00 46.78 C
ATOM 14 N9 A A2128 -10.252 20.330 92.213 1.00 46.38 N
ATOM 15 C8 A A2128 -10.852 20.199 90.978 1.00 46.33 C
ATOM 16 N7 A A2128 -10.461 19.134 90.304 1.00 45.93 N
ATOM 17 C5 A A2128 -9.541 18.557 91.163 1.00 45.71 C
ATOM 18 C6 A A2128 -8.753 17.434 91.063 1.00 45.30 C
ATOM 19 N6 A A2128 -8.706 16.636 90.016 1.00 45.01 N
ATOM 20 N1 A A2128 -7.993 17.144 92.121 1.00 45.22 N
ATOM 21 C2 A A2128 -7.989 17.927 93.201 1.00 45.53 C
ATOM 22 N3 A A2128 -8.656 19.026 93.413 1.00 45.92 N
ATOM 23 C4 A A2128 -9.417 19.267 92.341 1.00 45.99 C
ATOM 24 P C A2129 -8.522 25.174 90.937 1.00 45.09 P
ATOM 25 OP1 C A2129 -8.255 26.609 91.119 1.00 45.40 O
ATOM 26 OP2 C A2129 -9.092 24.741 89.658 1.00 44.95 O
ATOM 27 O5' C A2129 -7.209 24.331 91.292 1.00 44.64 O
TER
ATOM 1 O3' A B1938 -4.214 13.602 92.493 1.00 42.90 O
ATOM 2 P C B1939 -2.882 13.840 93.310 1.00 40.46 P
ATOM 3 OP1 C B1939 -1.924 14.182 92.350 1.00 40.19 O
ATOM 4 OP2 C B1939 -2.644 12.659 94.180 1.00 40.35 O
ATOM 5 O5' C B1939 -3.225 15.108 94.189 1.00 40.88 O
ATOM 6 C5' C B1939 -3.578 16.338 93.567 1.00 41.07 C
ATOM 7 C4' C B1939 -4.306 17.219 94.519 1.00 41.53 C
ATOM 8 O4' C B1939 -5.154 16.394 95.366 1.00 41.68 O
ATOM 9 C3' C B1939 -3.435 17.973 95.501 1.00 41.66 C
ATOM 10 O3' C B1939 -2.860 19.165 94.938 1.00 41.69 O
ATOM 11 C2' C B1939 -4.420 18.235 96.633 1.00 42.10 C
ATOM 12 O2' C B1939 -5.302 19.253 96.271 1.00 42.42 O
ATOM 13 C1' C B1939 -5.224 16.945 96.655 1.00 42.02 C
ATOM 14 N1 C B1939 -4.677 15.978 97.610 1.00 41.89 N
ATOM 15 C2 C B1939 -4.723 16.255 98.971 1.00 42.20 C
ATOM 16 O2 C B1939 -5.260 17.284 99.375 1.00 42.58 O
ATOM 17 N3 C B1939 -4.170 15.393 99.846 1.00 42.10 N
ATOM 18 C4 C B1939 -3.632 14.278 99.427 1.00 41.72 C
ATOM 19 N4 C B1939 -3.163 13.475 100.337 1.00 41.66 N
ATOM 20 C5 C B1939 -3.583 13.946 98.066 1.00 41.40 C
ATOM 21 C6 C B1939 -4.107 14.818 97.196 1.00 41.50 C
ATOM 22 P U B1940 -1.259 19.275 94.618 1.00 42.41 P
ATOM 23 OP1 U B1940 -1.044 20.475 93.789 1.00 42.49 O
ATOM 24 OP2 U B1940 -0.829 17.992 94.075 1.00 41.99 O
ATOM 25 O5' U B1940 -0.642 19.473 96.063 1.00 42.58 O
TER
ATOM 2 P A A2128 -13.477 23.183 89.368 1.00 47.41 P
ATOM 3 OP1 A A2128 -13.795 24.627 89.142 1.00 47.80 O
ATOM 4 OP2 A A2128 -13.094 22.325 88.181 1.00 46.99 O
ATOM 5 O5' A A2128 -12.387 23.059 90.505 1.00 47.26 O
ATOM 6 C5' A A2128 -12.556 23.731 91.737 1.00 47.62 C
ATOM 7 C4' A A2128 -11.468 23.356 92.689 1.00 47.40 C
ATOM 8 O4' A A2128 -11.631 21.973 93.085 1.00 47.19 O
ATOM 9 C3' A A2128 -10.067 23.406 92.127 1.00 47.00 C
ATOM 10 O3' A A2128 -9.541 24.721 92.101 1.00 47.19 O
ATOM 11 C2' A A2128 -9.337 22.471 93.051 1.00 46.76 C
ATOM 12 O2' A A2128 -9.112 23.095 94.306 1.00 47.04 O
ATOM 13 C1' A A2128 -10.385 21.372 93.235 1.00 46.78 C
ATOM 14 N9 A A2128 -10.252 20.330 92.213 1.00 46.38 N
ATOM 15 C8 A A2128 -10.852 20.199 90.978 1.00 46.33 C
ATOM 16 N7 A A2128 -10.461 19.134 90.304 1.00 45.93 N
ATOM 17 C5 A A2128 -9.541 18.557 91.163 1.00 45.71 C
ATOM 18 C6 A A2128 -8.753 17.434 91.063 1.00 45.30 C
ATOM 19 N6 A A2128 -8.706 16.636 90.016 1.00 45.01 N
ATOM 20 N1 A A2128 -7.993 17.144 92.121 1.00 45.22 N
ATOM 21 C2 A A2128 -7.989 17.927 93.201 1.00 45.53 C
ATOM 22 N3 A A2128 -8.656 19.026 93.413 1.00 45.92 N
ATOM 23 C4 A A2128 -9.417 19.267 92.341 1.00 45.99 C
ATOM 24 P C A2129 -8.522 25.174 90.937 1.00 45.09 P
ATOM 25 OP1 C A2129 -8.255 26.609 91.119 1.00 45.40 O
ATOM 26 OP2 C A2129 -9.092 24.741 89.658 1.00 44.95 O
ATOM 27 O5' C A2129 -7.209 24.331 91.292 1.00 44.64 O
TER
ATOM 1 O3' A B1938 -4.214 13.602 92.493 1.00 42.90 O
ATOM 2 P C B1939 -2.882 13.840 93.310 1.00 40.46 P
ATOM 3 OP1 C B1939 -1.924 14.182 92.350 1.00 40.19 O
ATOM 4 OP2 C B1939 -2.644 12.659 94.180 1.00 40.35 O
ATOM 5 O5' C B1939 -3.225 15.108 94.189 1.00 40.88 O
ATOM 6 C5' C B1939 -3.578 16.338 93.567 1.00 41.07 C
ATOM 7 C4' C B1939 -4.306 17.219 94.519 1.00 41.53 C
ATOM 8 O4' C B1939 -5.154 16.394 95.366 1.00 41.68 O
ATOM 9 C3' C B1939 -3.435 17.973 95.501 1.00 41.66 C
ATOM 10 O3' C B1939 -2.860 19.165 94.938 1.00 41.69 O
ATOM 11 C2' C B1939 -4.420 18.235 96.633 1.00 42.10 C
ATOM 12 O2' C B1939 -5.302 19.253 96.271 1.00 42.42 O
ATOM 13 C1' C B1939 -5.224 16.945 96.655 1.00 42.02 C
ATOM 14 N1 C B1939 -4.677 15.978 97.610 1.00 41.89 N
ATOM 15 C2 C B1939 -4.723 16.255 98.971 1.00 42.20 C
ATOM 16 O2 C B1939 -5.260 17.284 99.375 1.00 42.58 O
ATOM 17 N3 C B1939 -4.170 15.393 99.846 1.00 42.10 N
ATOM 18 C4 C B1939 -3.632 14.278 99.427 1.00 41.72 C
ATOM 19 N4 C B1939 -3.163 13.475 100.337 1.00 41.66 N
ATOM 20 C5 C B1939 -3.583 13.946 98.066 1.00 41.40 C
ATOM 21 C6 C B1939 -4.107 14.818 97.196 1.00 41.50 C
ATOM 22 P U B1940 -1.259 19.275 94.618 1.00 42.41 P
ATOM 23 OP1 U B1940 -1.044 20.475 93.789 1.00 42.49 O
ATOM 24 OP2 U B1940 -0.829 17.992 94.075 1.00 41.99 O
ATOM 25 O5' U B1940 -0.642 19.473 96.063 1.00 42.58 O
TER
Atoms:
OP1: (-13.795,24.627,89.142)
OP2: (-13.094,22.325,88.181)
C3': (-10.067,23.406,92.127)
C1': (-10.385,21.372,93.235)
C5': (-12.556,23.731,91.737)
O4': (-11.631,21.973,93.085)
C8: (-10.852,20.199,90.978)
O2': (-9.112,23.095,94.306)
C6: (-8.753,17.434,91.063)
C5: (-9.541,18.557,91.163)
C4: (-9.417,19.267,92.341)
P: (-13.477,23.183,89.368)
C4': (-11.468,23.356,92.689)
C2': (-9.337,22.471,93.051)
C2: (-7.989,17.927,93.201)
N1: (-7.993,17.144,92.121)
N3: (-8.656,19.026,93.413)
N6: (-8.706,16.636,90.016)
N7: (-10.461,19.134,90.304)
N9: (-10.252,20.330,92.213)
O5': (-12.387,23.059,90.505)
O3': (-9.541,24.721,92.101)
OP2: (-13.094,22.325,88.181)
C3': (-10.067,23.406,92.127)
C1': (-10.385,21.372,93.235)
C5': (-12.556,23.731,91.737)
O4': (-11.631,21.973,93.085)
C8: (-10.852,20.199,90.978)
O2': (-9.112,23.095,94.306)
C6: (-8.753,17.434,91.063)
C5: (-9.541,18.557,91.163)
C4: (-9.417,19.267,92.341)
P: (-13.477,23.183,89.368)
C4': (-11.468,23.356,92.689)
C2': (-9.337,22.471,93.051)
C2: (-7.989,17.927,93.201)
N1: (-7.993,17.144,92.121)
N3: (-8.656,19.026,93.413)
N6: (-8.706,16.636,90.016)
N7: (-10.461,19.134,90.304)
N9: (-10.252,20.330,92.213)
O5': (-12.387,23.059,90.505)
O3': (-9.541,24.721,92.101)
C2: (-4.723,16.255,98.971)
OP1: (-1.924,14.182,92.350)
OP2: (-2.644,12.659,94.180)
C4: (-3.632,14.278,99.427)
O5': (-3.225,15.108,94.189)
C3': (-3.435,17.973,95.501)
C1': (-5.224,16.945,96.655)
O4': (-5.154,16.394,95.366)
C5': (-3.578,16.338,93.567)
P: (-2.882,13.840,93.310)
O2: (-5.260,17.284,99.375)
C4': (-4.306,17.219,94.519)
C2': (-4.420,18.235,96.633)
O2': (-5.302,19.253,96.271)
N1: (-4.677,15.978,97.610)
N3: (-4.170,15.393,99.846)
N4: (-3.163,13.475,100.337)
C6: (-4.107,14.818,97.196)
C5: (-3.583,13.946,98.066)
O3': (-2.860,19.165,94.938)
OP1: (-1.924,14.182,92.350)
OP2: (-2.644,12.659,94.180)
C4: (-3.632,14.278,99.427)
O5': (-3.225,15.108,94.189)
C3': (-3.435,17.973,95.501)
C1': (-5.224,16.945,96.655)
O4': (-5.154,16.394,95.366)
C5': (-3.578,16.338,93.567)
P: (-2.882,13.840,93.310)
O2: (-5.260,17.284,99.375)
C4': (-4.306,17.219,94.519)
C2': (-4.420,18.235,96.633)
O2': (-5.302,19.253,96.271)
N1: (-4.677,15.978,97.610)
N3: (-4.170,15.393,99.846)
N4: (-3.163,13.475,100.337)
C6: (-4.107,14.818,97.196)
C5: (-3.583,13.946,98.066)
O3': (-2.860,19.165,94.938)
Image (generated by PyMOL):