Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12858:12646
Extra
PDB:
ATOM 1 O3' U A2857 23.680 22.579 14.531 1.00 48.12 O
ATOM 2 P A A2858 22.907 22.011 13.256 1.00 49.24 P
ATOM 3 OP1 A A2858 23.357 20.627 13.041 1.00 49.01 O
ATOM 4 OP2 A A2858 23.075 22.997 12.158 1.00 49.77 O
ATOM 5 O5' A A2858 21.402 22.012 13.746 1.00 49.29 O
ATOM 6 C5' A A2858 20.886 20.956 14.536 1.00 48.92 C
ATOM 7 C4' A A2858 19.522 21.297 15.062 1.00 49.01 C
ATOM 8 O4' A A2858 19.564 22.608 15.681 1.00 49.05 O
ATOM 9 C3' A A2858 18.421 21.415 14.024 1.00 49.55 C
ATOM 10 O3' A A2858 17.865 20.164 13.673 1.00 49.54 O
ATOM 11 C2' A A2858 17.428 22.318 14.724 1.00 49.64 C
ATOM 12 O2' A A2858 16.704 21.583 15.686 1.00 49.31 O
ATOM 13 C1' A A2858 18.345 23.282 15.459 1.00 49.44 C
ATOM 14 N9 A A2858 18.587 24.499 14.660 1.00 49.90 N
ATOM 15 C8 A A2858 19.679 24.890 13.959 1.00 50.04 C
ATOM 16 N7 A A2858 19.522 26.031 13.359 1.00 50.49 N
ATOM 17 C5 A A2858 18.239 26.414 13.648 1.00 50.68 C
ATOM 18 C6 A A2858 17.486 27.541 13.302 1.00 51.17 C
ATOM 19 N6 A A2858 17.888 28.530 12.516 1.00 51.58 N
ATOM 20 N1 A A2858 16.261 27.626 13.822 1.00 51.22 N
ATOM 21 C2 A A2858 15.815 26.637 14.608 1.00 50.82 C
ATOM 22 N3 A A2858 16.430 25.523 15.002 1.00 50.35 N
ATOM 23 C4 A A2858 17.657 25.476 14.466 1.00 50.31 C
ATOM 24 P U A2859 17.719 19.711 12.130 1.00 48.77 P
ATOM 25 OP1 U A2859 17.209 18.332 12.151 1.00 48.62 O
ATOM 26 OP2 U A2859 19.005 19.998 11.446 1.00 48.85 O
ATOM 27 O5' U A2859 16.607 20.682 11.516 1.00 49.34 O
TER
ATOM 1 O3' C B2645 12.075 31.568 15.816 1.00 50.02 O
ATOM 2 P C B2646 10.832 31.011 14.947 1.00 54.84 P
ATOM 3 OP1 C B2646 10.518 32.071 13.921 1.00 55.51 O
ATOM 4 OP2 C B2646 9.757 30.595 15.897 1.00 54.65 O
ATOM 5 O5' C B2646 11.463 29.722 14.239 1.00 54.65 O
ATOM 6 C5' C B2646 10.709 28.525 14.061 1.00 54.58 C
ATOM 7 C4' C B2646 11.621 27.335 13.956 1.00 54.17 C
ATOM 8 O4' C B2646 12.221 27.093 15.257 1.00 53.57 O
ATOM 9 C3' C B2646 10.967 26.006 13.576 1.00 54.14 C
ATOM 10 O3' C B2646 10.823 25.832 12.171 1.00 54.61 O
ATOM 11 C2' C B2646 11.904 24.986 14.208 1.00 53.53 C
ATOM 12 O2' C B2646 13.060 24.819 13.411 1.00 53.55 O
ATOM 13 C1' C B2646 12.307 25.703 15.503 1.00 53.17 C
ATOM 14 N1 C B2646 11.394 25.383 16.611 1.00 52.92 N
ATOM 15 C2 C B2646 11.201 24.075 17.045 1.00 52.55 C
ATOM 16 O2 C B2646 11.812 23.152 16.527 1.00 52.42 O
ATOM 17 N3 C B2646 10.295 23.839 18.026 1.00 52.37 N
ATOM 18 C4 C B2646 9.631 24.852 18.584 1.00 52.53 C
ATOM 19 N4 C B2646 8.785 24.563 19.554 1.00 52.35 N
ATOM 20 C5 C B2646 9.835 26.193 18.173 1.00 52.90 C
ATOM 21 C6 C B2646 10.706 26.414 17.183 1.00 53.09 C
ATOM 22 P G B2647 9.358 25.660 11.485 1.00 49.06 P
ATOM 23 OP1 G B2647 9.432 26.340 10.164 1.00 49.66 O
ATOM 24 OP2 G B2647 8.336 26.094 12.471 1.00 49.01 O
ATOM 25 O5' G B2647 9.212 24.104 11.261 1.00 48.85 O
TER
ATOM 2 P A A2858 22.907 22.011 13.256 1.00 49.24 P
ATOM 3 OP1 A A2858 23.357 20.627 13.041 1.00 49.01 O
ATOM 4 OP2 A A2858 23.075 22.997 12.158 1.00 49.77 O
ATOM 5 O5' A A2858 21.402 22.012 13.746 1.00 49.29 O
ATOM 6 C5' A A2858 20.886 20.956 14.536 1.00 48.92 C
ATOM 7 C4' A A2858 19.522 21.297 15.062 1.00 49.01 C
ATOM 8 O4' A A2858 19.564 22.608 15.681 1.00 49.05 O
ATOM 9 C3' A A2858 18.421 21.415 14.024 1.00 49.55 C
ATOM 10 O3' A A2858 17.865 20.164 13.673 1.00 49.54 O
ATOM 11 C2' A A2858 17.428 22.318 14.724 1.00 49.64 C
ATOM 12 O2' A A2858 16.704 21.583 15.686 1.00 49.31 O
ATOM 13 C1' A A2858 18.345 23.282 15.459 1.00 49.44 C
ATOM 14 N9 A A2858 18.587 24.499 14.660 1.00 49.90 N
ATOM 15 C8 A A2858 19.679 24.890 13.959 1.00 50.04 C
ATOM 16 N7 A A2858 19.522 26.031 13.359 1.00 50.49 N
ATOM 17 C5 A A2858 18.239 26.414 13.648 1.00 50.68 C
ATOM 18 C6 A A2858 17.486 27.541 13.302 1.00 51.17 C
ATOM 19 N6 A A2858 17.888 28.530 12.516 1.00 51.58 N
ATOM 20 N1 A A2858 16.261 27.626 13.822 1.00 51.22 N
ATOM 21 C2 A A2858 15.815 26.637 14.608 1.00 50.82 C
ATOM 22 N3 A A2858 16.430 25.523 15.002 1.00 50.35 N
ATOM 23 C4 A A2858 17.657 25.476 14.466 1.00 50.31 C
ATOM 24 P U A2859 17.719 19.711 12.130 1.00 48.77 P
ATOM 25 OP1 U A2859 17.209 18.332 12.151 1.00 48.62 O
ATOM 26 OP2 U A2859 19.005 19.998 11.446 1.00 48.85 O
ATOM 27 O5' U A2859 16.607 20.682 11.516 1.00 49.34 O
TER
ATOM 1 O3' C B2645 12.075 31.568 15.816 1.00 50.02 O
ATOM 2 P C B2646 10.832 31.011 14.947 1.00 54.84 P
ATOM 3 OP1 C B2646 10.518 32.071 13.921 1.00 55.51 O
ATOM 4 OP2 C B2646 9.757 30.595 15.897 1.00 54.65 O
ATOM 5 O5' C B2646 11.463 29.722 14.239 1.00 54.65 O
ATOM 6 C5' C B2646 10.709 28.525 14.061 1.00 54.58 C
ATOM 7 C4' C B2646 11.621 27.335 13.956 1.00 54.17 C
ATOM 8 O4' C B2646 12.221 27.093 15.257 1.00 53.57 O
ATOM 9 C3' C B2646 10.967 26.006 13.576 1.00 54.14 C
ATOM 10 O3' C B2646 10.823 25.832 12.171 1.00 54.61 O
ATOM 11 C2' C B2646 11.904 24.986 14.208 1.00 53.53 C
ATOM 12 O2' C B2646 13.060 24.819 13.411 1.00 53.55 O
ATOM 13 C1' C B2646 12.307 25.703 15.503 1.00 53.17 C
ATOM 14 N1 C B2646 11.394 25.383 16.611 1.00 52.92 N
ATOM 15 C2 C B2646 11.201 24.075 17.045 1.00 52.55 C
ATOM 16 O2 C B2646 11.812 23.152 16.527 1.00 52.42 O
ATOM 17 N3 C B2646 10.295 23.839 18.026 1.00 52.37 N
ATOM 18 C4 C B2646 9.631 24.852 18.584 1.00 52.53 C
ATOM 19 N4 C B2646 8.785 24.563 19.554 1.00 52.35 N
ATOM 20 C5 C B2646 9.835 26.193 18.173 1.00 52.90 C
ATOM 21 C6 C B2646 10.706 26.414 17.183 1.00 53.09 C
ATOM 22 P G B2647 9.358 25.660 11.485 1.00 49.06 P
ATOM 23 OP1 G B2647 9.432 26.340 10.164 1.00 49.66 O
ATOM 24 OP2 G B2647 8.336 26.094 12.471 1.00 49.01 O
ATOM 25 O5' G B2647 9.212 24.104 11.261 1.00 48.85 O
TER
Atoms:
OP1: (23.357,20.627,13.041)
OP2: (23.075,22.997,12.158)
C3': (18.421,21.415,14.024)
C1': (18.345,23.282,15.459)
C5': (20.886,20.956,14.536)
O4': (19.564,22.608,15.681)
C8: (19.679,24.890,13.959)
O2': (16.704,21.583,15.686)
C6: (17.486,27.541,13.302)
C5: (18.239,26.414,13.648)
C4: (17.657,25.476,14.466)
P: (22.907,22.011,13.256)
C4': (19.522,21.297,15.062)
C2': (17.428,22.318,14.724)
C2: (15.815,26.637,14.608)
N1: (16.261,27.626,13.822)
N3: (16.430,25.523,15.002)
N6: (17.888,28.530,12.516)
N7: (19.522,26.031,13.359)
N9: (18.587,24.499,14.660)
O5': (21.402,22.012,13.746)
O3': (17.865,20.164,13.673)
OP2: (23.075,22.997,12.158)
C3': (18.421,21.415,14.024)
C1': (18.345,23.282,15.459)
C5': (20.886,20.956,14.536)
O4': (19.564,22.608,15.681)
C8: (19.679,24.890,13.959)
O2': (16.704,21.583,15.686)
C6: (17.486,27.541,13.302)
C5: (18.239,26.414,13.648)
C4: (17.657,25.476,14.466)
P: (22.907,22.011,13.256)
C4': (19.522,21.297,15.062)
C2': (17.428,22.318,14.724)
C2: (15.815,26.637,14.608)
N1: (16.261,27.626,13.822)
N3: (16.430,25.523,15.002)
N6: (17.888,28.530,12.516)
N7: (19.522,26.031,13.359)
N9: (18.587,24.499,14.660)
O5': (21.402,22.012,13.746)
O3': (17.865,20.164,13.673)
C2: (11.201,24.075,17.045)
OP1: (10.518,32.071,13.921)
OP2: (9.757,30.595,15.897)
C4: (9.631,24.852,18.584)
O5': (11.463,29.722,14.239)
C3': (10.967,26.006,13.576)
C1': (12.307,25.703,15.503)
O4': (12.221,27.093,15.257)
C5': (10.709,28.525,14.061)
P: (10.832,31.011,14.947)
O2: (11.812,23.152,16.527)
C4': (11.621,27.335,13.956)
C2': (11.904,24.986,14.208)
O2': (13.060,24.819,13.411)
N1: (11.394,25.383,16.611)
N3: (10.295,23.839,18.026)
N4: (8.785,24.563,19.554)
C6: (10.706,26.414,17.183)
C5: (9.835,26.193,18.173)
O3': (10.823,25.832,12.171)
OP1: (10.518,32.071,13.921)
OP2: (9.757,30.595,15.897)
C4: (9.631,24.852,18.584)
O5': (11.463,29.722,14.239)
C3': (10.967,26.006,13.576)
C1': (12.307,25.703,15.503)
O4': (12.221,27.093,15.257)
C5': (10.709,28.525,14.061)
P: (10.832,31.011,14.947)
O2: (11.812,23.152,16.527)
C4': (11.621,27.335,13.956)
C2': (11.904,24.986,14.208)
O2': (13.060,24.819,13.411)
N1: (11.394,25.383,16.611)
N3: (10.295,23.839,18.026)
N4: (8.785,24.563,19.554)
C6: (10.706,26.414,17.183)
C5: (9.835,26.193,18.173)
O3': (10.823,25.832,12.171)
Image (generated by PyMOL):