Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y59:Y13
Extra
PDB:
ATOM 1 O3' U A 58 4.785 26.032 44.841 1.00 29.01 O
ATOM 2 P A A 59 3.629 26.267 43.763 1.00 28.93 P
ATOM 3 OP1 A A 59 4.246 26.903 42.579 1.00 29.16 O
ATOM 4 OP2 A A 59 2.492 26.925 44.447 1.00 28.86 O
ATOM 5 O5' A A 59 3.180 24.779 43.378 1.00 28.95 O
ATOM 6 C5' A A 59 2.102 24.576 42.469 1.00 28.88 C
ATOM 7 C4' A A 59 1.837 23.096 42.260 1.00 28.70 C
ATOM 8 O4' A A 59 2.749 22.581 41.256 1.00 28.56 O
ATOM 9 C3' A A 59 2.045 22.230 43.495 1.00 28.64 C
ATOM 10 O3' A A 59 0.816 22.104 44.215 1.00 28.94 O
ATOM 11 C2' A A 59 2.499 20.899 42.901 1.00 28.61 C
ATOM 12 O2' A A 59 1.410 20.089 42.502 1.00 28.38 O
ATOM 13 C1' A A 59 3.279 21.335 41.666 1.00 28.10 C
ATOM 14 N9 A A 59 4.726 21.475 41.833 1.00 27.85 N
ATOM 15 C8 A A 59 5.436 22.643 41.862 1.00 27.63 C
ATOM 16 N7 A A 59 6.730 22.477 41.996 1.00 27.58 N
ATOM 17 C5 A A 59 6.886 21.102 42.043 1.00 27.63 C
ATOM 18 C6 A A 59 8.025 20.280 42.176 1.00 27.72 C
ATOM 19 N6 A A 59 9.270 20.757 42.284 1.00 27.46 N
ATOM 20 N1 A A 59 7.835 18.944 42.192 1.00 27.44 N
ATOM 21 C2 A A 59 6.587 18.472 42.083 1.00 27.44 C
ATOM 22 N3 A A 59 5.443 19.143 41.953 1.00 27.33 N
ATOM 23 C4 A A 59 5.662 20.467 41.940 1.00 27.70 C
ATOM 24 P A A 60 0.822 22.096 45.818 1.00 28.88 P
ATOM 25 OP1 A A 60 -0.577 22.067 46.296 1.00 29.05 O
ATOM 26 OP2 A A 60 1.722 23.178 46.270 1.00 28.76 O
ATOM 27 O5' A A 60 1.517 20.694 46.151 1.00 28.47 O
TER
ATOM 1 O3' C B 12 4.167 13.209 45.578 1.00 31.97 O
ATOM 2 P C B 13 3.281 12.639 44.373 1.00 33.15 P
ATOM 3 OP1 C B 13 1.857 12.837 44.724 1.00 33.26 O
ATOM 4 OP2 C B 13 3.782 11.287 44.027 1.00 33.32 O
ATOM 5 O5' C B 13 3.654 13.630 43.175 1.00 33.01 O
ATOM 6 C5' C B 13 3.509 15.036 43.355 1.00 32.90 C
ATOM 7 C4' C B 13 3.986 15.795 42.130 1.00 33.42 C
ATOM 8 O4' C B 13 5.406 15.565 41.937 1.00 32.98 O
ATOM 9 C3' C B 13 3.304 15.390 40.825 1.00 34.19 C
ATOM 10 O3' C B 13 3.109 16.527 39.998 1.00 36.11 O
ATOM 11 C2' C B 13 4.320 14.447 40.196 1.00 33.17 C
ATOM 12 O2' C B 13 4.211 14.405 38.788 1.00 32.69 O
ATOM 13 C1' C B 13 5.617 15.129 40.610 1.00 32.69 C
ATOM 14 N1 C B 13 6.799 14.223 40.535 1.00 32.10 N
ATOM 15 C2 C B 13 7.885 14.586 39.729 1.00 31.84 C
ATOM 16 O2 C B 13 7.850 15.661 39.116 1.00 31.83 O
ATOM 17 N3 C B 13 8.948 13.751 39.645 1.00 31.49 N
ATOM 18 C4 C B 13 8.948 12.600 40.318 1.00 31.82 C
ATOM 19 N4 C B 13 10.021 11.812 40.196 1.00 31.87 N
ATOM 20 C5 C B 13 7.847 12.208 41.140 1.00 31.93 C
ATOM 21 C6 C B 13 6.801 13.039 41.215 1.00 31.78 C
ATOM 22 P C B 14 1.737 17.346 40.047 1.00 37.68 P
ATOM 23 OP1 C B 14 1.476 17.729 41.454 1.00 37.42 O
ATOM 24 OP2 C B 14 0.724 16.587 39.284 1.00 38.01 O
ATOM 25 O5' C B 14 2.123 18.657 39.213 1.00 37.80 O
TER
ATOM 2 P A A 59 3.629 26.267 43.763 1.00 28.93 P
ATOM 3 OP1 A A 59 4.246 26.903 42.579 1.00 29.16 O
ATOM 4 OP2 A A 59 2.492 26.925 44.447 1.00 28.86 O
ATOM 5 O5' A A 59 3.180 24.779 43.378 1.00 28.95 O
ATOM 6 C5' A A 59 2.102 24.576 42.469 1.00 28.88 C
ATOM 7 C4' A A 59 1.837 23.096 42.260 1.00 28.70 C
ATOM 8 O4' A A 59 2.749 22.581 41.256 1.00 28.56 O
ATOM 9 C3' A A 59 2.045 22.230 43.495 1.00 28.64 C
ATOM 10 O3' A A 59 0.816 22.104 44.215 1.00 28.94 O
ATOM 11 C2' A A 59 2.499 20.899 42.901 1.00 28.61 C
ATOM 12 O2' A A 59 1.410 20.089 42.502 1.00 28.38 O
ATOM 13 C1' A A 59 3.279 21.335 41.666 1.00 28.10 C
ATOM 14 N9 A A 59 4.726 21.475 41.833 1.00 27.85 N
ATOM 15 C8 A A 59 5.436 22.643 41.862 1.00 27.63 C
ATOM 16 N7 A A 59 6.730 22.477 41.996 1.00 27.58 N
ATOM 17 C5 A A 59 6.886 21.102 42.043 1.00 27.63 C
ATOM 18 C6 A A 59 8.025 20.280 42.176 1.00 27.72 C
ATOM 19 N6 A A 59 9.270 20.757 42.284 1.00 27.46 N
ATOM 20 N1 A A 59 7.835 18.944 42.192 1.00 27.44 N
ATOM 21 C2 A A 59 6.587 18.472 42.083 1.00 27.44 C
ATOM 22 N3 A A 59 5.443 19.143 41.953 1.00 27.33 N
ATOM 23 C4 A A 59 5.662 20.467 41.940 1.00 27.70 C
ATOM 24 P A A 60 0.822 22.096 45.818 1.00 28.88 P
ATOM 25 OP1 A A 60 -0.577 22.067 46.296 1.00 29.05 O
ATOM 26 OP2 A A 60 1.722 23.178 46.270 1.00 28.76 O
ATOM 27 O5' A A 60 1.517 20.694 46.151 1.00 28.47 O
TER
ATOM 1 O3' C B 12 4.167 13.209 45.578 1.00 31.97 O
ATOM 2 P C B 13 3.281 12.639 44.373 1.00 33.15 P
ATOM 3 OP1 C B 13 1.857 12.837 44.724 1.00 33.26 O
ATOM 4 OP2 C B 13 3.782 11.287 44.027 1.00 33.32 O
ATOM 5 O5' C B 13 3.654 13.630 43.175 1.00 33.01 O
ATOM 6 C5' C B 13 3.509 15.036 43.355 1.00 32.90 C
ATOM 7 C4' C B 13 3.986 15.795 42.130 1.00 33.42 C
ATOM 8 O4' C B 13 5.406 15.565 41.937 1.00 32.98 O
ATOM 9 C3' C B 13 3.304 15.390 40.825 1.00 34.19 C
ATOM 10 O3' C B 13 3.109 16.527 39.998 1.00 36.11 O
ATOM 11 C2' C B 13 4.320 14.447 40.196 1.00 33.17 C
ATOM 12 O2' C B 13 4.211 14.405 38.788 1.00 32.69 O
ATOM 13 C1' C B 13 5.617 15.129 40.610 1.00 32.69 C
ATOM 14 N1 C B 13 6.799 14.223 40.535 1.00 32.10 N
ATOM 15 C2 C B 13 7.885 14.586 39.729 1.00 31.84 C
ATOM 16 O2 C B 13 7.850 15.661 39.116 1.00 31.83 O
ATOM 17 N3 C B 13 8.948 13.751 39.645 1.00 31.49 N
ATOM 18 C4 C B 13 8.948 12.600 40.318 1.00 31.82 C
ATOM 19 N4 C B 13 10.021 11.812 40.196 1.00 31.87 N
ATOM 20 C5 C B 13 7.847 12.208 41.140 1.00 31.93 C
ATOM 21 C6 C B 13 6.801 13.039 41.215 1.00 31.78 C
ATOM 22 P C B 14 1.737 17.346 40.047 1.00 37.68 P
ATOM 23 OP1 C B 14 1.476 17.729 41.454 1.00 37.42 O
ATOM 24 OP2 C B 14 0.724 16.587 39.284 1.00 38.01 O
ATOM 25 O5' C B 14 2.123 18.657 39.213 1.00 37.80 O
TER
Atoms:
OP1: (4.246,26.903,42.579)
OP2: (2.492,26.925,44.447)
C3': (2.045,22.230,43.495)
C1': (3.279,21.335,41.666)
C5': (2.102,24.576,42.469)
O4': (2.749,22.581,41.256)
C8: (5.436,22.643,41.862)
O2': (1.410,20.089,42.502)
C6: (8.025,20.280,42.176)
C5: (6.886,21.102,42.043)
C4: (5.662,20.467,41.940)
P: (3.629,26.267,43.763)
C4': (1.837,23.096,42.260)
C2': (2.499,20.899,42.901)
C2: (6.587,18.472,42.083)
N1: (7.835,18.944,42.192)
N3: (5.443,19.143,41.953)
N6: (9.270,20.757,42.284)
N7: (6.730,22.477,41.996)
N9: (4.726,21.475,41.833)
O5': (3.180,24.779,43.378)
O3': (0.816,22.104,44.215)
OP2: (2.492,26.925,44.447)
C3': (2.045,22.230,43.495)
C1': (3.279,21.335,41.666)
C5': (2.102,24.576,42.469)
O4': (2.749,22.581,41.256)
C8: (5.436,22.643,41.862)
O2': (1.410,20.089,42.502)
C6: (8.025,20.280,42.176)
C5: (6.886,21.102,42.043)
C4: (5.662,20.467,41.940)
P: (3.629,26.267,43.763)
C4': (1.837,23.096,42.260)
C2': (2.499,20.899,42.901)
C2: (6.587,18.472,42.083)
N1: (7.835,18.944,42.192)
N3: (5.443,19.143,41.953)
N6: (9.270,20.757,42.284)
N7: (6.730,22.477,41.996)
N9: (4.726,21.475,41.833)
O5': (3.180,24.779,43.378)
O3': (0.816,22.104,44.215)
C2: (7.885,14.586,39.729)
OP1: (1.857,12.837,44.724)
OP2: (3.782,11.287,44.027)
C4: (8.948,12.600,40.318)
O5': (3.654,13.630,43.175)
C3': (3.304,15.390,40.825)
C1': (5.617,15.129,40.610)
O4': (5.406,15.565,41.937)
C5': (3.509,15.036,43.355)
P: (3.281,12.639,44.373)
O2: (7.850,15.661,39.116)
C4': (3.986,15.795,42.130)
C2': (4.320,14.447,40.196)
O2': (4.211,14.405,38.788)
N1: (6.799,14.223,40.535)
N3: (8.948,13.751,39.645)
N4: (10.021,11.812,40.196)
C6: (6.801,13.039,41.215)
C5: (7.847,12.208,41.140)
O3': (3.109,16.527,39.998)
OP1: (1.857,12.837,44.724)
OP2: (3.782,11.287,44.027)
C4: (8.948,12.600,40.318)
O5': (3.654,13.630,43.175)
C3': (3.304,15.390,40.825)
C1': (5.617,15.129,40.610)
O4': (5.406,15.565,41.937)
C5': (3.509,15.036,43.355)
P: (3.281,12.639,44.373)
O2: (7.850,15.661,39.116)
C4': (3.986,15.795,42.130)
C2': (4.320,14.447,40.196)
O2': (4.211,14.405,38.788)
N1: (6.799,14.223,40.535)
N3: (8.948,13.751,39.645)
N4: (10.021,11.812,40.196)
C6: (6.801,13.039,41.215)
C5: (7.847,12.208,41.140)
O3': (3.109,16.527,39.998)
Image (generated by PyMOL):