Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01:02032
Extra
PDB:
ATOM 1 P A A 1 20.739 148.895 101.144 1.00 79.56 P
ATOM 2 OP1 A A 1 20.477 149.296 99.740 1.00 80.92 O
ATOM 3 OP2 A A 1 21.029 147.474 101.458 1.00 77.83 O
ATOM 4 O5' A A 1 21.925 149.801 101.690 1.00 75.99 O
ATOM 5 C5' A A 1 23.269 149.581 101.271 1.00 70.05 C
ATOM 6 C4' A A 1 24.210 150.446 102.066 1.00 65.23 C
ATOM 7 O4' A A 1 23.961 150.315 103.488 1.00 64.04 O
ATOM 8 C3' A A 1 25.667 150.097 101.859 1.00 62.95 C
ATOM 9 O3' A A 1 26.178 150.877 100.795 1.00 61.13 O
ATOM 10 C2' A A 1 26.281 150.405 103.217 1.00 62.95 C
ATOM 11 O2' A A 1 26.490 151.784 103.409 1.00 65.22 O
ATOM 12 C1' A A 1 25.155 149.962 104.152 1.00 61.58 C
ATOM 13 N9 A A 1 25.101 148.522 104.406 1.00 60.27 N
ATOM 14 C8 A A 1 23.990 147.711 104.356 1.00 59.68 C
ATOM 15 N7 A A 1 24.238 146.455 104.625 1.00 58.75 N
ATOM 16 C5 A A 1 25.603 146.432 104.869 1.00 59.00 C
ATOM 17 C6 A A 1 26.479 145.395 105.208 1.00 58.33 C
ATOM 18 N6 A A 1 26.098 144.126 105.357 1.00 58.48 N
ATOM 19 N1 A A 1 27.780 145.707 105.389 1.00 58.72 N
ATOM 20 C2 A A 1 28.163 146.978 105.235 1.00 58.80 C
ATOM 21 N3 A A 1 27.436 148.042 104.914 1.00 60.09 N
ATOM 22 C4 A A 1 26.148 147.698 104.742 1.00 60.04 C
ATOM 23 P U A 2 26.290 150.242 99.325 1.00 62.43 P
ATOM 24 OP1 U A 2 26.636 151.357 98.412 1.00 62.70 O
ATOM 25 OP2 U A 2 25.091 149.415 99.040 1.00 62.22 O
ATOM 26 O5' U A 2 27.547 149.265 99.432 1.00 62.15 O
TER
ATOM 1 O3' A B2031 31.287 141.621 106.125 1.00 44.84 O
ATOM 2 P C B2032 32.823 141.807 105.718 1.00 43.95 P
ATOM 3 OP1 C B2032 33.012 141.068 104.449 1.00 45.34 O
ATOM 4 OP2 C B2032 33.655 141.465 106.895 1.00 44.58 O
ATOM 5 O5' C B2032 32.975 143.371 105.450 1.00 42.71 O
ATOM 6 C5' C B2032 32.270 144.010 104.372 1.00 41.25 C
ATOM 7 C4' C B2032 32.497 145.508 104.395 1.00 40.91 C
ATOM 8 O4' C B2032 31.942 146.081 105.611 1.00 41.25 O
ATOM 9 C3' C B2032 33.938 145.978 104.400 1.00 40.17 C
ATOM 10 O3' C B2032 34.503 145.966 103.100 1.00 42.97 O
ATOM 11 C2' C B2032 33.805 147.387 104.955 1.00 39.17 C
ATOM 12 O2' C B2032 33.314 148.292 103.988 1.00 38.82 O
ATOM 13 C1' C B2032 32.735 147.182 106.028 1.00 38.96 C
ATOM 14 N1 C B2032 33.295 146.880 107.362 1.00 39.35 N
ATOM 15 C2 C B2032 33.674 147.938 108.197 1.00 39.58 C
ATOM 16 O2 C B2032 33.501 149.100 107.812 1.00 40.62 O
ATOM 17 N3 C B2032 34.213 147.665 109.406 1.00 39.40 N
ATOM 18 C4 C B2032 34.359 146.399 109.800 1.00 39.73 C
ATOM 19 N4 C B2032 34.884 146.174 110.999 1.00 39.60 N
ATOM 20 C5 C B2032 33.970 145.305 108.980 1.00 40.35 C
ATOM 21 C6 C B2032 33.450 145.587 107.781 1.00 40.79 C
ATOM 22 P C B2033 36.097 145.816 102.927 1.00 47.48 P
ATOM 23 OP1 C B2033 36.347 145.796 101.458 1.00 46.36 O
ATOM 24 OP2 C B2033 36.588 144.693 103.773 1.00 45.44 O
ATOM 25 O5' C B2033 36.689 147.171 103.520 1.00 43.38 O
TER
ATOM 2 OP1 A A 1 20.477 149.296 99.740 1.00 80.92 O
ATOM 3 OP2 A A 1 21.029 147.474 101.458 1.00 77.83 O
ATOM 4 O5' A A 1 21.925 149.801 101.690 1.00 75.99 O
ATOM 5 C5' A A 1 23.269 149.581 101.271 1.00 70.05 C
ATOM 6 C4' A A 1 24.210 150.446 102.066 1.00 65.23 C
ATOM 7 O4' A A 1 23.961 150.315 103.488 1.00 64.04 O
ATOM 8 C3' A A 1 25.667 150.097 101.859 1.00 62.95 C
ATOM 9 O3' A A 1 26.178 150.877 100.795 1.00 61.13 O
ATOM 10 C2' A A 1 26.281 150.405 103.217 1.00 62.95 C
ATOM 11 O2' A A 1 26.490 151.784 103.409 1.00 65.22 O
ATOM 12 C1' A A 1 25.155 149.962 104.152 1.00 61.58 C
ATOM 13 N9 A A 1 25.101 148.522 104.406 1.00 60.27 N
ATOM 14 C8 A A 1 23.990 147.711 104.356 1.00 59.68 C
ATOM 15 N7 A A 1 24.238 146.455 104.625 1.00 58.75 N
ATOM 16 C5 A A 1 25.603 146.432 104.869 1.00 59.00 C
ATOM 17 C6 A A 1 26.479 145.395 105.208 1.00 58.33 C
ATOM 18 N6 A A 1 26.098 144.126 105.357 1.00 58.48 N
ATOM 19 N1 A A 1 27.780 145.707 105.389 1.00 58.72 N
ATOM 20 C2 A A 1 28.163 146.978 105.235 1.00 58.80 C
ATOM 21 N3 A A 1 27.436 148.042 104.914 1.00 60.09 N
ATOM 22 C4 A A 1 26.148 147.698 104.742 1.00 60.04 C
ATOM 23 P U A 2 26.290 150.242 99.325 1.00 62.43 P
ATOM 24 OP1 U A 2 26.636 151.357 98.412 1.00 62.70 O
ATOM 25 OP2 U A 2 25.091 149.415 99.040 1.00 62.22 O
ATOM 26 O5' U A 2 27.547 149.265 99.432 1.00 62.15 O
TER
ATOM 1 O3' A B2031 31.287 141.621 106.125 1.00 44.84 O
ATOM 2 P C B2032 32.823 141.807 105.718 1.00 43.95 P
ATOM 3 OP1 C B2032 33.012 141.068 104.449 1.00 45.34 O
ATOM 4 OP2 C B2032 33.655 141.465 106.895 1.00 44.58 O
ATOM 5 O5' C B2032 32.975 143.371 105.450 1.00 42.71 O
ATOM 6 C5' C B2032 32.270 144.010 104.372 1.00 41.25 C
ATOM 7 C4' C B2032 32.497 145.508 104.395 1.00 40.91 C
ATOM 8 O4' C B2032 31.942 146.081 105.611 1.00 41.25 O
ATOM 9 C3' C B2032 33.938 145.978 104.400 1.00 40.17 C
ATOM 10 O3' C B2032 34.503 145.966 103.100 1.00 42.97 O
ATOM 11 C2' C B2032 33.805 147.387 104.955 1.00 39.17 C
ATOM 12 O2' C B2032 33.314 148.292 103.988 1.00 38.82 O
ATOM 13 C1' C B2032 32.735 147.182 106.028 1.00 38.96 C
ATOM 14 N1 C B2032 33.295 146.880 107.362 1.00 39.35 N
ATOM 15 C2 C B2032 33.674 147.938 108.197 1.00 39.58 C
ATOM 16 O2 C B2032 33.501 149.100 107.812 1.00 40.62 O
ATOM 17 N3 C B2032 34.213 147.665 109.406 1.00 39.40 N
ATOM 18 C4 C B2032 34.359 146.399 109.800 1.00 39.73 C
ATOM 19 N4 C B2032 34.884 146.174 110.999 1.00 39.60 N
ATOM 20 C5 C B2032 33.970 145.305 108.980 1.00 40.35 C
ATOM 21 C6 C B2032 33.450 145.587 107.781 1.00 40.79 C
ATOM 22 P C B2033 36.097 145.816 102.927 1.00 47.48 P
ATOM 23 OP1 C B2033 36.347 145.796 101.458 1.00 46.36 O
ATOM 24 OP2 C B2033 36.588 144.693 103.773 1.00 45.44 O
ATOM 25 O5' C B2033 36.689 147.171 103.520 1.00 43.38 O
TER
Atoms:
OP1: (20.477,149.296,99.740)
OP2: (21.029,147.474,101.458)
C3': (25.667,150.097,101.859)
C1': (25.155,149.962,104.152)
C5': (23.269,149.581,101.271)
O4': (23.961,150.315,103.488)
C8: (23.990,147.711,104.356)
O2': (26.490,151.784,103.409)
C6: (26.479,145.395,105.208)
C5: (25.603,146.432,104.869)
C4: (26.148,147.698,104.742)
P: (20.739,148.895,101.144)
C4': (24.210,150.446,102.066)
C2': (26.281,150.405,103.217)
C2: (28.163,146.978,105.235)
N1: (27.780,145.707,105.389)
N3: (27.436,148.042,104.914)
N6: (26.098,144.126,105.357)
N7: (24.238,146.455,104.625)
N9: (25.101,148.522,104.406)
O5': (21.925,149.801,101.690)
O3': (26.178,150.877,100.795)
OP2: (21.029,147.474,101.458)
C3': (25.667,150.097,101.859)
C1': (25.155,149.962,104.152)
C5': (23.269,149.581,101.271)
O4': (23.961,150.315,103.488)
C8: (23.990,147.711,104.356)
O2': (26.490,151.784,103.409)
C6: (26.479,145.395,105.208)
C5: (25.603,146.432,104.869)
C4: (26.148,147.698,104.742)
P: (20.739,148.895,101.144)
C4': (24.210,150.446,102.066)
C2': (26.281,150.405,103.217)
C2: (28.163,146.978,105.235)
N1: (27.780,145.707,105.389)
N3: (27.436,148.042,104.914)
N6: (26.098,144.126,105.357)
N7: (24.238,146.455,104.625)
N9: (25.101,148.522,104.406)
O5': (21.925,149.801,101.690)
O3': (26.178,150.877,100.795)
C2: (33.674,147.938,108.197)
OP1: (33.012,141.068,104.449)
OP2: (33.655,141.465,106.895)
C4: (34.359,146.399,109.800)
O5': (32.975,143.371,105.450)
C3': (33.938,145.978,104.400)
C1': (32.735,147.182,106.028)
O4': (31.942,146.081,105.611)
C5': (32.270,144.010,104.372)
P: (32.823,141.807,105.718)
O2: (33.501,149.100,107.812)
C4': (32.497,145.508,104.395)
C2': (33.805,147.387,104.955)
O2': (33.314,148.292,103.988)
N1: (33.295,146.880,107.362)
N3: (34.213,147.665,109.406)
N4: (34.884,146.174,110.999)
C6: (33.450,145.587,107.781)
C5: (33.970,145.305,108.980)
O3': (34.503,145.966,103.100)
OP1: (33.012,141.068,104.449)
OP2: (33.655,141.465,106.895)
C4: (34.359,146.399,109.800)
O5': (32.975,143.371,105.450)
C3': (33.938,145.978,104.400)
C1': (32.735,147.182,106.028)
O4': (31.942,146.081,105.611)
C5': (32.270,144.010,104.372)
P: (32.823,141.807,105.718)
O2: (33.501,149.100,107.812)
C4': (32.497,145.508,104.395)
C2': (33.805,147.387,104.955)
O2': (33.314,148.292,103.988)
N1: (33.295,146.880,107.362)
N3: (34.213,147.665,109.406)
N4: (34.884,146.174,110.999)
C6: (33.450,145.587,107.781)
C5: (33.970,145.305,108.980)
O3': (34.503,145.966,103.100)
Image (generated by PyMOL):