Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X59:X13
Extra
PDB:
ATOM 1 O3' U A 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 2 P A A 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A A 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A A 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A A 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A A 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A A 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A A 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A A 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A A 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A A 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A A 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A A 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A A 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A A 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A A 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A A 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A A 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A A 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A A 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A A 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A A 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A A 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A A 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A A 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A A 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A A 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
ATOM 1 O3' C B 12 -12.263 -13.707 13.934 1.00 31.55 O
ATOM 2 P C B 13 -11.628 -13.080 15.263 1.00 32.24 P
ATOM 3 OP1 C B 13 -12.497 -13.465 16.394 1.00 32.21 O
ATOM 4 OP2 C B 13 -11.322 -11.656 15.004 1.00 32.95 O
ATOM 5 O5' C B 13 -10.233 -13.855 15.382 1.00 33.47 O
ATOM 6 C5' C B 13 -10.195 -15.278 15.325 1.00 34.53 C
ATOM 7 C4' C B 13 -8.762 -15.763 15.181 1.00 34.23 C
ATOM 8 O4' C B 13 -8.186 -15.208 13.969 1.00 34.52 O
ATOM 9 C3' C B 13 -7.840 -15.334 16.319 1.00 35.21 C
ATOM 10 O3' C B 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 11 C2' C B 13 -7.142 -14.112 15.738 1.00 34.18 C
ATOM 12 O2' C B 13 -5.882 -13.875 16.334 1.00 34.09 O
ATOM 13 C1' C B 13 -6.972 -14.561 14.293 1.00 32.80 C
ATOM 14 N1 C B 13 -6.733 -13.410 13.382 1.00 32.89 N
ATOM 15 C2 C B 13 -5.524 -13.330 12.681 1.00 32.64 C
ATOM 16 O2 C B 13 -4.691 -14.241 12.811 1.00 31.61 O
ATOM 17 N3 C B 13 -5.306 -12.259 11.877 1.00 31.58 N
ATOM 18 C4 C B 13 -6.231 -11.301 11.775 1.00 31.63 C
ATOM 19 N4 C B 13 -5.973 -10.268 10.968 1.00 30.02 N
ATOM 20 C5 C B 13 -7.466 -11.361 12.491 1.00 32.72 C
ATOM 21 C6 C B 13 -7.670 -12.421 13.281 1.00 33.06 C
ATOM 22 P C B 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 23 OP1 C B 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 24 OP2 C B 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 25 O5' C B 14 -5.613 -18.001 17.882 1.00 40.02 O
TER
ATOM 2 P A A 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A A 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A A 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A A 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A A 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A A 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A A 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A A 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A A 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A A 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A A 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A A 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A A 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A A 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A A 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A A 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A A 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A A 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A A 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A A 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A A 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A A 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A A 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A A 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A A 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A A 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
ATOM 1 O3' C B 12 -12.263 -13.707 13.934 1.00 31.55 O
ATOM 2 P C B 13 -11.628 -13.080 15.263 1.00 32.24 P
ATOM 3 OP1 C B 13 -12.497 -13.465 16.394 1.00 32.21 O
ATOM 4 OP2 C B 13 -11.322 -11.656 15.004 1.00 32.95 O
ATOM 5 O5' C B 13 -10.233 -13.855 15.382 1.00 33.47 O
ATOM 6 C5' C B 13 -10.195 -15.278 15.325 1.00 34.53 C
ATOM 7 C4' C B 13 -8.762 -15.763 15.181 1.00 34.23 C
ATOM 8 O4' C B 13 -8.186 -15.208 13.969 1.00 34.52 O
ATOM 9 C3' C B 13 -7.840 -15.334 16.319 1.00 35.21 C
ATOM 10 O3' C B 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 11 C2' C B 13 -7.142 -14.112 15.738 1.00 34.18 C
ATOM 12 O2' C B 13 -5.882 -13.875 16.334 1.00 34.09 O
ATOM 13 C1' C B 13 -6.972 -14.561 14.293 1.00 32.80 C
ATOM 14 N1 C B 13 -6.733 -13.410 13.382 1.00 32.89 N
ATOM 15 C2 C B 13 -5.524 -13.330 12.681 1.00 32.64 C
ATOM 16 O2 C B 13 -4.691 -14.241 12.811 1.00 31.61 O
ATOM 17 N3 C B 13 -5.306 -12.259 11.877 1.00 31.58 N
ATOM 18 C4 C B 13 -6.231 -11.301 11.775 1.00 31.63 C
ATOM 19 N4 C B 13 -5.973 -10.268 10.968 1.00 30.02 N
ATOM 20 C5 C B 13 -7.466 -11.361 12.491 1.00 32.72 C
ATOM 21 C6 C B 13 -7.670 -12.421 13.281 1.00 33.06 C
ATOM 22 P C B 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 23 OP1 C B 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 24 OP2 C B 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 25 O5' C B 14 -5.613 -18.001 17.882 1.00 40.02 O
TER
Atoms:
OP1: (-6.663,-26.569,12.780)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
C2: (-5.524,-13.330,12.681)
OP1: (-12.497,-13.465,16.394)
OP2: (-11.322,-11.656,15.004)
C4: (-6.231,-11.301,11.775)
O5': (-10.233,-13.855,15.382)
C3': (-7.840,-15.334,16.319)
C1': (-6.972,-14.561,14.293)
O4': (-8.186,-15.208,13.969)
C5': (-10.195,-15.278,15.325)
P: (-11.628,-13.080,15.263)
O2: (-4.691,-14.241,12.811)
C4': (-8.762,-15.763,15.181)
C2': (-7.142,-14.112,15.738)
O2': (-5.882,-13.875,16.334)
N1: (-6.733,-13.410,13.382)
N3: (-5.306,-12.259,11.877)
N4: (-5.973,-10.268,10.968)
C6: (-7.670,-12.421,13.281)
C5: (-7.466,-11.361,12.491)
O3': (-6.892,-16.349,16.585)
OP1: (-12.497,-13.465,16.394)
OP2: (-11.322,-11.656,15.004)
C4: (-6.231,-11.301,11.775)
O5': (-10.233,-13.855,15.382)
C3': (-7.840,-15.334,16.319)
C1': (-6.972,-14.561,14.293)
O4': (-8.186,-15.208,13.969)
C5': (-10.195,-15.278,15.325)
P: (-11.628,-13.080,15.263)
O2: (-4.691,-14.241,12.811)
C4': (-8.762,-15.763,15.181)
C2': (-7.142,-14.112,15.738)
O2': (-5.882,-13.875,16.334)
N1: (-6.733,-13.410,13.382)
N3: (-5.306,-12.259,11.877)
N4: (-5.973,-10.268,10.968)
C6: (-7.670,-12.421,13.281)
C5: (-7.466,-11.361,12.491)
O3': (-6.892,-16.349,16.585)
Image (generated by PyMOL):