Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12180:12577
Extra
PDB:
ATOM 1 O3' A A2179 40.778 -0.336 48.631 1.00 33.54 O
ATOM 2 P A A2180 40.727 1.152 47.999 1.00 36.05 P
ATOM 3 OP1 A A2180 42.039 1.836 48.245 1.00 36.04 O
ATOM 4 OP2 A A2180 39.484 1.791 48.533 1.00 36.07 O
ATOM 5 O5' A A2180 40.619 0.932 46.450 1.00 36.22 O
ATOM 6 C5' A A2180 39.792 -0.032 45.917 1.00 36.26 C
ATOM 7 C4' A A2180 38.633 0.555 45.194 1.00 36.42 C
ATOM 8 O4' A A2180 38.003 -0.558 44.569 1.00 36.47 O
ATOM 9 C3' A A2180 37.568 1.162 46.091 1.00 36.38 C
ATOM 10 O3' A A2180 36.652 1.927 45.316 1.00 36.56 O
ATOM 11 C2' A A2180 36.851 -0.068 46.550 1.00 36.29 C
ATOM 12 O2' A A2180 35.531 0.163 46.974 1.00 36.31 O
ATOM 13 C1' A A2180 36.876 -0.931 45.293 1.00 36.40 C
ATOM 14 N9 A A2180 36.968 -2.339 45.591 1.00 36.30 N
ATOM 15 C8 A A2180 37.759 -2.889 46.537 1.00 36.14 C
ATOM 16 N7 A A2180 37.582 -4.186 46.723 1.00 36.08 N
ATOM 17 C5 A A2180 36.580 -4.469 45.832 1.00 36.23 C
ATOM 18 C6 A A2180 35.955 -5.669 45.555 1.00 36.27 C
ATOM 19 N6 A A2180 36.304 -6.800 46.201 1.00 36.16 N
ATOM 20 N1 A A2180 34.962 -5.626 44.628 1.00 36.44 N
ATOM 21 C2 A A2180 34.675 -4.466 44.041 1.00 36.56 C
ATOM 22 N3 A A2180 35.204 -3.270 44.224 1.00 36.54 N
ATOM 23 C4 A A2180 36.163 -3.341 45.147 1.00 36.37 C
ATOM 24 P C A2181 36.223 3.427 45.722 1.00 40.96 P
ATOM 25 OP1 C A2181 35.489 3.360 47.002 1.00 40.84 O
ATOM 26 OP2 C A2181 35.568 3.996 44.545 1.00 41.19 O
ATOM 27 O5' C A2181 37.609 4.142 45.928 1.00 40.93 O
TER
ATOM 1 O3' G B2576 32.477 0.462 41.817 1.00 42.54 O
ATOM 2 P C B2577 31.372 0.077 40.768 1.00 46.53 P
ATOM 3 OP1 C B2577 31.832 0.600 39.482 1.00 46.73 O
ATOM 4 OP2 C B2577 30.050 0.542 41.306 1.00 46.57 O
ATOM 5 O5' C B2577 31.424 -1.500 40.768 1.00 46.45 O
ATOM 6 C5' C B2577 32.488 -2.192 40.159 1.00 46.45 C
ATOM 7 C4' C B2577 32.266 -3.682 40.197 1.00 46.41 C
ATOM 8 O4' C B2577 32.262 -4.136 41.569 1.00 46.18 O
ATOM 9 C3' C B2577 30.945 -4.174 39.649 1.00 46.59 C
ATOM 10 O3' C B2577 30.952 -4.312 38.257 1.00 46.83 O
ATOM 11 C2' C B2577 30.744 -5.484 40.378 1.00 46.45 C
ATOM 12 O2' C B2577 31.553 -6.477 39.813 1.00 46.48 O
ATOM 13 C1' C B2577 31.316 -5.167 41.738 1.00 46.20 C
ATOM 14 N1 C B2577 30.291 -4.720 42.673 1.00 46.14 N
ATOM 15 C2 C B2577 29.456 -5.686 43.197 1.00 46.10 C
ATOM 16 O2 C B2577 29.593 -6.917 42.872 1.00 46.13 O
ATOM 17 N3 C B2577 28.496 -5.252 44.060 1.00 46.06 N
ATOM 18 C4 C B2577 28.375 -3.996 44.416 1.00 46.05 C
ATOM 19 N4 C B2577 27.405 -3.704 45.277 1.00 46.02 N
ATOM 20 C5 C B2577 29.247 -3.011 43.889 1.00 46.08 C
ATOM 21 C6 C B2577 30.177 -3.422 43.035 1.00 46.12 C
ATOM 22 P U B2578 29.698 -3.780 37.411 1.00 40.53 P
ATOM 23 OP1 U B2578 30.018 -3.945 35.970 1.00 40.77 O
ATOM 24 OP2 U B2578 29.398 -2.450 37.901 1.00 40.50 O
ATOM 25 O5' U B2578 28.547 -4.791 37.818 1.00 40.53 O
TER
ATOM 2 P A A2180 40.727 1.152 47.999 1.00 36.05 P
ATOM 3 OP1 A A2180 42.039 1.836 48.245 1.00 36.04 O
ATOM 4 OP2 A A2180 39.484 1.791 48.533 1.00 36.07 O
ATOM 5 O5' A A2180 40.619 0.932 46.450 1.00 36.22 O
ATOM 6 C5' A A2180 39.792 -0.032 45.917 1.00 36.26 C
ATOM 7 C4' A A2180 38.633 0.555 45.194 1.00 36.42 C
ATOM 8 O4' A A2180 38.003 -0.558 44.569 1.00 36.47 O
ATOM 9 C3' A A2180 37.568 1.162 46.091 1.00 36.38 C
ATOM 10 O3' A A2180 36.652 1.927 45.316 1.00 36.56 O
ATOM 11 C2' A A2180 36.851 -0.068 46.550 1.00 36.29 C
ATOM 12 O2' A A2180 35.531 0.163 46.974 1.00 36.31 O
ATOM 13 C1' A A2180 36.876 -0.931 45.293 1.00 36.40 C
ATOM 14 N9 A A2180 36.968 -2.339 45.591 1.00 36.30 N
ATOM 15 C8 A A2180 37.759 -2.889 46.537 1.00 36.14 C
ATOM 16 N7 A A2180 37.582 -4.186 46.723 1.00 36.08 N
ATOM 17 C5 A A2180 36.580 -4.469 45.832 1.00 36.23 C
ATOM 18 C6 A A2180 35.955 -5.669 45.555 1.00 36.27 C
ATOM 19 N6 A A2180 36.304 -6.800 46.201 1.00 36.16 N
ATOM 20 N1 A A2180 34.962 -5.626 44.628 1.00 36.44 N
ATOM 21 C2 A A2180 34.675 -4.466 44.041 1.00 36.56 C
ATOM 22 N3 A A2180 35.204 -3.270 44.224 1.00 36.54 N
ATOM 23 C4 A A2180 36.163 -3.341 45.147 1.00 36.37 C
ATOM 24 P C A2181 36.223 3.427 45.722 1.00 40.96 P
ATOM 25 OP1 C A2181 35.489 3.360 47.002 1.00 40.84 O
ATOM 26 OP2 C A2181 35.568 3.996 44.545 1.00 41.19 O
ATOM 27 O5' C A2181 37.609 4.142 45.928 1.00 40.93 O
TER
ATOM 1 O3' G B2576 32.477 0.462 41.817 1.00 42.54 O
ATOM 2 P C B2577 31.372 0.077 40.768 1.00 46.53 P
ATOM 3 OP1 C B2577 31.832 0.600 39.482 1.00 46.73 O
ATOM 4 OP2 C B2577 30.050 0.542 41.306 1.00 46.57 O
ATOM 5 O5' C B2577 31.424 -1.500 40.768 1.00 46.45 O
ATOM 6 C5' C B2577 32.488 -2.192 40.159 1.00 46.45 C
ATOM 7 C4' C B2577 32.266 -3.682 40.197 1.00 46.41 C
ATOM 8 O4' C B2577 32.262 -4.136 41.569 1.00 46.18 O
ATOM 9 C3' C B2577 30.945 -4.174 39.649 1.00 46.59 C
ATOM 10 O3' C B2577 30.952 -4.312 38.257 1.00 46.83 O
ATOM 11 C2' C B2577 30.744 -5.484 40.378 1.00 46.45 C
ATOM 12 O2' C B2577 31.553 -6.477 39.813 1.00 46.48 O
ATOM 13 C1' C B2577 31.316 -5.167 41.738 1.00 46.20 C
ATOM 14 N1 C B2577 30.291 -4.720 42.673 1.00 46.14 N
ATOM 15 C2 C B2577 29.456 -5.686 43.197 1.00 46.10 C
ATOM 16 O2 C B2577 29.593 -6.917 42.872 1.00 46.13 O
ATOM 17 N3 C B2577 28.496 -5.252 44.060 1.00 46.06 N
ATOM 18 C4 C B2577 28.375 -3.996 44.416 1.00 46.05 C
ATOM 19 N4 C B2577 27.405 -3.704 45.277 1.00 46.02 N
ATOM 20 C5 C B2577 29.247 -3.011 43.889 1.00 46.08 C
ATOM 21 C6 C B2577 30.177 -3.422 43.035 1.00 46.12 C
ATOM 22 P U B2578 29.698 -3.780 37.411 1.00 40.53 P
ATOM 23 OP1 U B2578 30.018 -3.945 35.970 1.00 40.77 O
ATOM 24 OP2 U B2578 29.398 -2.450 37.901 1.00 40.50 O
ATOM 25 O5' U B2578 28.547 -4.791 37.818 1.00 40.53 O
TER
Atoms:
OP1: (42.039,1.836,48.245)
OP2: (39.484,1.791,48.533)
C3': (37.568,1.162,46.091)
C1': (36.876,-0.931,45.293)
C5': (39.792,-0.032,45.917)
O4': (38.003,-0.558,44.569)
C8: (37.759,-2.889,46.537)
O2': (35.531,0.163,46.974)
C6: (35.955,-5.669,45.555)
C5: (36.580,-4.469,45.832)
C4: (36.163,-3.341,45.147)
P: (40.727,1.152,47.999)
C4': (38.633,0.555,45.194)
C2': (36.851,-0.068,46.550)
C2: (34.675,-4.466,44.041)
N1: (34.962,-5.626,44.628)
N3: (35.204,-3.270,44.224)
N6: (36.304,-6.800,46.201)
N7: (37.582,-4.186,46.723)
N9: (36.968,-2.339,45.591)
O5': (40.619,0.932,46.450)
O3': (36.652,1.927,45.316)
OP2: (39.484,1.791,48.533)
C3': (37.568,1.162,46.091)
C1': (36.876,-0.931,45.293)
C5': (39.792,-0.032,45.917)
O4': (38.003,-0.558,44.569)
C8: (37.759,-2.889,46.537)
O2': (35.531,0.163,46.974)
C6: (35.955,-5.669,45.555)
C5: (36.580,-4.469,45.832)
C4: (36.163,-3.341,45.147)
P: (40.727,1.152,47.999)
C4': (38.633,0.555,45.194)
C2': (36.851,-0.068,46.550)
C2: (34.675,-4.466,44.041)
N1: (34.962,-5.626,44.628)
N3: (35.204,-3.270,44.224)
N6: (36.304,-6.800,46.201)
N7: (37.582,-4.186,46.723)
N9: (36.968,-2.339,45.591)
O5': (40.619,0.932,46.450)
O3': (36.652,1.927,45.316)
C2: (29.456,-5.686,43.197)
OP1: (31.832,0.600,39.482)
OP2: (30.050,0.542,41.306)
C4: (28.375,-3.996,44.416)
O5': (31.424,-1.500,40.768)
C3': (30.945,-4.174,39.649)
C1': (31.316,-5.167,41.738)
O4': (32.262,-4.136,41.569)
C5': (32.488,-2.192,40.159)
P: (31.372,0.077,40.768)
O2: (29.593,-6.917,42.872)
C4': (32.266,-3.682,40.197)
C2': (30.744,-5.484,40.378)
O2': (31.553,-6.477,39.813)
N1: (30.291,-4.720,42.673)
N3: (28.496,-5.252,44.060)
N4: (27.405,-3.704,45.277)
C6: (30.177,-3.422,43.035)
C5: (29.247,-3.011,43.889)
O3': (30.952,-4.312,38.257)
OP1: (31.832,0.600,39.482)
OP2: (30.050,0.542,41.306)
C4: (28.375,-3.996,44.416)
O5': (31.424,-1.500,40.768)
C3': (30.945,-4.174,39.649)
C1': (31.316,-5.167,41.738)
O4': (32.262,-4.136,41.569)
C5': (32.488,-2.192,40.159)
P: (31.372,0.077,40.768)
O2: (29.593,-6.917,42.872)
C4': (32.266,-3.682,40.197)
C2': (30.744,-5.484,40.378)
O2': (31.553,-6.477,39.813)
N1: (30.291,-4.720,42.673)
N3: (28.496,-5.252,44.060)
N4: (27.405,-3.704,45.277)
C6: (30.177,-3.422,43.035)
C5: (29.247,-3.011,43.889)
O3': (30.952,-4.312,38.257)
Image (generated by PyMOL):