ClaRNA

Doublet info:

Details

Nucleotide types: AC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A423:A223

Extra

PDB:
ATOM 1 O3' U A 422 66.858 115.831 16.390 1.00 50.82 O
ATOM 2 P A A 423 65.841 115.502 17.597 1.00 51.48 P
ATOM 3 OP1 A A 423 66.109 116.551 18.590 1.00 51.48 O
ATOM 4 OP2 A A 423 65.918 114.067 17.994 1.00 50.90 O
ATOM 5 O5' A A 423 64.386 115.749 16.992 1.00 51.91 O
ATOM 6 C5' A A 423 64.064 116.980 16.313 1.00 52.75 C
ATOM 7 C4' A A 423 62.774 116.831 15.543 1.00 53.61 C
ATOM 8 O4' A A 423 62.929 115.807 14.532 1.00 54.71 O
ATOM 9 C3' A A 423 61.603 116.388 16.396 1.00 54.74 C
ATOM 10 O3' A A 423 60.944 117.525 16.945 1.00 55.17 O
ATOM 11 C2' A A 423 60.746 115.566 15.434 1.00 55.23 C
ATOM 12 O2' A A 423 59.899 116.340 14.604 1.00 57.58 O
ATOM 13 C1' A A 423 61.820 114.927 14.554 1.00 54.83 C
ATOM 14 N9 A A 423 62.311 113.608 14.960 1.00 54.79 N
ATOM 15 C8 A A 423 63.523 113.282 15.540 1.00 54.13 C
ATOM 16 N7 A A 423 63.688 111.995 15.735 1.00 53.75 N
ATOM 17 C5 A A 423 62.506 111.436 15.264 1.00 54.67 C
ATOM 18 C6 A A 423 62.052 110.106 15.177 1.00 54.90 C
ATOM 19 N6 A A 423 62.756 109.053 15.586 1.00 54.88 N
ATOM 20 N1 A A 423 60.829 109.895 14.650 1.00 55.77 N
ATOM 21 C2 A A 423 60.112 110.953 14.246 1.00 56.76 C
ATOM 22 N3 A A 423 60.423 112.246 14.275 1.00 55.72 N
ATOM 23 C4 A A 423 61.646 112.422 14.796 1.00 54.63 C
ATOM 24 P A A 424 60.162 117.387 18.336 1.00 55.23 P
ATOM 25 OP1 A A 424 59.214 118.520 18.520 1.00 56.08 O
ATOM 26 OP2 A A 424 61.152 117.085 19.395 1.00 56.55 O
ATOM 27 O5' A A 424 59.264 116.111 18.067 1.00 55.25 O
TER

ATOM 1 O3' A B 222 53.662 110.561 17.198 1.00 55.49 O
ATOM 2 P C B 223 53.846 110.433 15.610 1.00 57.83 P
ATOM 3 OP1 C B 223 53.707 111.778 14.998 1.00 55.82 O
ATOM 4 OP2 C B 223 52.953 109.332 15.177 1.00 58.39 O
ATOM 5 O5' C B 223 55.353 109.932 15.464 1.00 56.73 O
ATOM 6 C5' C B 223 55.752 109.095 14.370 1.00 54.30 C
ATOM 7 C4' C B 223 57.107 108.511 14.641 1.00 52.84 C
ATOM 8 O4' C B 223 57.016 107.547 15.720 1.00 52.24 O
ATOM 9 C3' C B 223 57.682 107.724 13.483 1.00 53.35 C
ATOM 10 O3' C B 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 11 C2' C B 223 58.656 106.789 14.179 1.00 52.26 C
ATOM 12 O2' C B 223 59.869 107.429 14.512 1.00 51.68 O
ATOM 13 C1' C B 223 57.884 106.451 15.458 1.00 52.40 C
ATOM 14 N1 C B 223 57.085 105.193 15.388 1.00 52.67 N
ATOM 15 C2 C B 223 57.761 103.956 15.406 1.00 52.89 C
ATOM 16 O2 C B 223 58.993 103.936 15.511 1.00 52.28 O
ATOM 17 N3 C B 223 57.051 102.808 15.314 1.00 53.72 N
ATOM 18 C4 C B 223 55.722 102.847 15.224 1.00 53.76 C
ATOM 19 N4 C B 223 55.080 101.677 15.116 1.00 53.50 N
ATOM 20 C5 C B 223 55.000 104.080 15.231 1.00 52.25 C
ATOM 21 C6 C B 223 55.714 105.218 15.306 1.00 52.92 C
ATOM 22 P A B 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 23 OP1 A B 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 24 OP2 A B 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 25 O5' A B 224 59.847 107.193 11.114 1.00 51.08 O
TER

Atoms:
OP1: (66.109,116.551,18.590)
OP2: (65.918,114.067,17.994)
C3': (61.603,116.388,16.396)
C1': (61.820,114.927,14.554)
C5': (64.064,116.980,16.313)
O4': (62.929,115.807,14.532)
C8: (63.523,113.282,15.540)
O2': (59.899,116.340,14.604)
C6: (62.052,110.106,15.177)
C5: (62.506,111.436,15.264)
C4: (61.646,112.422,14.796)
P: (65.841,115.502,17.597)
C4': (62.774,116.831,15.543)
C2': (60.746,115.566,15.434)
C2: (60.112,110.953,14.246)
N1: (60.829,109.895,14.650)
N3: (60.423,112.246,14.275)
N6: (62.756,109.053,15.586)
N7: (63.688,111.995,15.735)
N9: (62.311,113.608,14.960)
O5': (64.386,115.749,16.992)
O3': (60.944,117.525,16.945)
C2: (57.761,103.956,15.406)
OP1: (53.707,111.778,14.998)
OP2: (52.953,109.332,15.177)
C4: (55.722,102.847,15.224)
O5': (55.353,109.932,15.464)
C3': (57.682,107.724,13.483)
C1': (57.884,106.451,15.458)
O4': (57.016,107.547,15.720)
C5': (55.752,109.095,14.370)
P: (53.846,110.433,15.610)
O2: (58.993,103.936,15.511)
C4': (57.107,108.511,14.641)
C2': (58.656,106.789,14.179)
O2': (59.869,107.429,14.512)
N1: (57.085,105.193,15.388)
N3: (57.051,102.808,15.314)
N4: (55.080,101.677,15.116)
C6: (55.714,105.218,15.306)
C5: (55.000,104.080,15.231)
O3': (58.292,108.588,12.522)
Image (generated by PyMOL):
PyMOL image
show in jmol