Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:01223:0553
Extra
PDB:
ATOM 1 O3' C A1222 7.689 88.911 97.736 1.00 36.77 O
ATOM 2 P U A1223 7.388 89.064 96.179 1.00 37.38 P
ATOM 3 OP1 U A1223 6.540 87.930 95.743 1.00 38.20 O
ATOM 4 OP2 U A1223 8.701 89.271 95.542 1.00 37.98 O
ATOM 5 O5' U A1223 6.561 90.422 96.109 1.00 33.42 O
ATOM 6 C5' U A1223 5.244 90.487 96.664 1.00 33.98 C
ATOM 7 C4' U A1223 4.710 91.896 96.626 1.00 34.07 C
ATOM 8 O4' U A1223 5.510 92.755 97.473 1.00 36.37 O
ATOM 9 C3' U A1223 4.744 92.604 95.291 1.00 33.66 C
ATOM 10 O3' U A1223 3.687 92.204 94.452 1.00 37.14 O
ATOM 11 C2' U A1223 4.597 94.053 95.709 1.00 33.64 C
ATOM 12 O2' U A1223 3.275 94.376 96.055 1.00 31.18 O
ATOM 13 C1' U A1223 5.469 94.081 96.962 1.00 36.04 C
ATOM 14 N1 U A1223 6.836 94.520 96.642 1.00 39.46 N
ATOM 15 C2 U A1223 7.073 95.884 96.625 1.00 39.46 C
ATOM 16 O2 U A1223 6.217 96.709 96.895 1.00 37.68 O
ATOM 17 N3 U A1223 8.350 96.246 96.280 1.00 40.25 N
ATOM 18 C4 U A1223 9.391 95.408 95.957 1.00 39.65 C
ATOM 19 O4 U A1223 10.461 95.897 95.605 1.00 41.88 O
ATOM 20 C5 U A1223 9.081 94.011 96.014 1.00 38.76 C
ATOM 21 C6 U A1223 7.848 93.622 96.348 1.00 38.60 C
ATOM 22 P G A1224 3.772 92.505 92.882 1.00 40.08 P
ATOM 23 OP1 G A1224 2.854 91.557 92.193 1.00 39.30 O
ATOM 24 OP2 G A1224 5.210 92.543 92.503 1.00 40.06 O
ATOM 25 O5' G A1224 3.174 93.974 92.747 1.00 38.58 O
TER
ATOM 1 O3' G B 552 -5.624 94.624 96.697 1.00 54.17 O
ATOM 2 P A B 553 -5.095 93.727 97.922 1.00 54.20 P
ATOM 3 OP1 A B 553 -5.669 92.368 97.750 1.00 50.98 O
ATOM 4 OP2 A B 553 -5.294 94.460 99.205 1.00 52.38 O
ATOM 5 O5' A B 553 -3.537 93.594 97.629 1.00 51.58 O
ATOM 6 C5' A B 553 -3.087 92.877 96.464 1.00 51.23 C
ATOM 7 C4' A B 553 -1.588 92.947 96.335 1.00 48.96 C
ATOM 8 O4' A B 553 -1.172 94.267 95.903 1.00 47.84 O
ATOM 9 C3' A B 553 -0.804 92.715 97.608 1.00 48.10 C
ATOM 10 O3' A B 553 -0.707 91.334 97.909 1.00 48.09 O
ATOM 11 C2' A B 553 0.537 93.329 97.250 1.00 47.47 C
ATOM 12 O2' A B 553 1.252 92.472 96.380 1.00 45.54 O
ATOM 13 C1' A B 553 0.091 94.568 96.470 1.00 46.14 C
ATOM 14 N9 A B 553 -0.049 95.791 97.264 1.00 44.78 N
ATOM 15 C8 A B 553 -1.206 96.322 97.775 1.00 45.07 C
ATOM 16 N7 A B 553 -1.037 97.469 98.390 1.00 46.20 N
ATOM 17 C5 A B 553 0.326 97.704 98.293 1.00 46.51 C
ATOM 18 C6 A B 553 1.144 98.771 98.737 1.00 47.21 C
ATOM 19 N6 A B 553 0.684 99.840 99.387 1.00 47.25 N
ATOM 20 N1 A B 553 2.465 98.698 98.479 1.00 46.73 N
ATOM 21 C2 A B 553 2.927 97.629 97.815 1.00 47.04 C
ATOM 22 N3 A B 553 2.263 96.571 97.342 1.00 46.02 N
ATOM 23 C4 A B 553 0.951 96.670 97.616 1.00 45.93 C
ATOM 24 P A B 554 -0.819 90.845 99.437 1.00 49.58 P
ATOM 25 OP1 A B 554 -1.024 89.366 99.406 1.00 47.18 O
ATOM 26 OP2 A B 554 -1.786 91.712 100.171 1.00 47.78 O
ATOM 27 O5' A B 554 0.615 91.155 100.055 1.00 49.28 O
TER
ATOM 2 P U A1223 7.388 89.064 96.179 1.00 37.38 P
ATOM 3 OP1 U A1223 6.540 87.930 95.743 1.00 38.20 O
ATOM 4 OP2 U A1223 8.701 89.271 95.542 1.00 37.98 O
ATOM 5 O5' U A1223 6.561 90.422 96.109 1.00 33.42 O
ATOM 6 C5' U A1223 5.244 90.487 96.664 1.00 33.98 C
ATOM 7 C4' U A1223 4.710 91.896 96.626 1.00 34.07 C
ATOM 8 O4' U A1223 5.510 92.755 97.473 1.00 36.37 O
ATOM 9 C3' U A1223 4.744 92.604 95.291 1.00 33.66 C
ATOM 10 O3' U A1223 3.687 92.204 94.452 1.00 37.14 O
ATOM 11 C2' U A1223 4.597 94.053 95.709 1.00 33.64 C
ATOM 12 O2' U A1223 3.275 94.376 96.055 1.00 31.18 O
ATOM 13 C1' U A1223 5.469 94.081 96.962 1.00 36.04 C
ATOM 14 N1 U A1223 6.836 94.520 96.642 1.00 39.46 N
ATOM 15 C2 U A1223 7.073 95.884 96.625 1.00 39.46 C
ATOM 16 O2 U A1223 6.217 96.709 96.895 1.00 37.68 O
ATOM 17 N3 U A1223 8.350 96.246 96.280 1.00 40.25 N
ATOM 18 C4 U A1223 9.391 95.408 95.957 1.00 39.65 C
ATOM 19 O4 U A1223 10.461 95.897 95.605 1.00 41.88 O
ATOM 20 C5 U A1223 9.081 94.011 96.014 1.00 38.76 C
ATOM 21 C6 U A1223 7.848 93.622 96.348 1.00 38.60 C
ATOM 22 P G A1224 3.772 92.505 92.882 1.00 40.08 P
ATOM 23 OP1 G A1224 2.854 91.557 92.193 1.00 39.30 O
ATOM 24 OP2 G A1224 5.210 92.543 92.503 1.00 40.06 O
ATOM 25 O5' G A1224 3.174 93.974 92.747 1.00 38.58 O
TER
ATOM 1 O3' G B 552 -5.624 94.624 96.697 1.00 54.17 O
ATOM 2 P A B 553 -5.095 93.727 97.922 1.00 54.20 P
ATOM 3 OP1 A B 553 -5.669 92.368 97.750 1.00 50.98 O
ATOM 4 OP2 A B 553 -5.294 94.460 99.205 1.00 52.38 O
ATOM 5 O5' A B 553 -3.537 93.594 97.629 1.00 51.58 O
ATOM 6 C5' A B 553 -3.087 92.877 96.464 1.00 51.23 C
ATOM 7 C4' A B 553 -1.588 92.947 96.335 1.00 48.96 C
ATOM 8 O4' A B 553 -1.172 94.267 95.903 1.00 47.84 O
ATOM 9 C3' A B 553 -0.804 92.715 97.608 1.00 48.10 C
ATOM 10 O3' A B 553 -0.707 91.334 97.909 1.00 48.09 O
ATOM 11 C2' A B 553 0.537 93.329 97.250 1.00 47.47 C
ATOM 12 O2' A B 553 1.252 92.472 96.380 1.00 45.54 O
ATOM 13 C1' A B 553 0.091 94.568 96.470 1.00 46.14 C
ATOM 14 N9 A B 553 -0.049 95.791 97.264 1.00 44.78 N
ATOM 15 C8 A B 553 -1.206 96.322 97.775 1.00 45.07 C
ATOM 16 N7 A B 553 -1.037 97.469 98.390 1.00 46.20 N
ATOM 17 C5 A B 553 0.326 97.704 98.293 1.00 46.51 C
ATOM 18 C6 A B 553 1.144 98.771 98.737 1.00 47.21 C
ATOM 19 N6 A B 553 0.684 99.840 99.387 1.00 47.25 N
ATOM 20 N1 A B 553 2.465 98.698 98.479 1.00 46.73 N
ATOM 21 C2 A B 553 2.927 97.629 97.815 1.00 47.04 C
ATOM 22 N3 A B 553 2.263 96.571 97.342 1.00 46.02 N
ATOM 23 C4 A B 553 0.951 96.670 97.616 1.00 45.93 C
ATOM 24 P A B 554 -0.819 90.845 99.437 1.00 49.58 P
ATOM 25 OP1 A B 554 -1.024 89.366 99.406 1.00 47.18 O
ATOM 26 OP2 A B 554 -1.786 91.712 100.171 1.00 47.78 O
ATOM 27 O5' A B 554 0.615 91.155 100.055 1.00 49.28 O
TER
Atoms:
C4: (9.391,95.408,95.957)
N3: (8.350,96.246,96.280)
OP1: (6.540,87.930,95.743)
OP2: (8.701,89.271,95.542)
C2: (7.073,95.884,96.625)
C1': (5.469,94.081,96.962)
C3': (4.744,92.604,95.291)
O5': (6.561,90.422,96.109)
O4': (5.510,92.755,97.473)
C5': (5.244,90.487,96.664)
P: (7.388,89.064,96.179)
C4': (4.710,91.896,96.626)
C2': (4.597,94.053,95.709)
O2': (3.275,94.376,96.055)
N1: (6.836,94.520,96.642)
O4: (10.461,95.897,95.605)
O2: (6.217,96.709,96.895)
C6: (7.848,93.622,96.348)
C5: (9.081,94.011,96.014)
O3': (3.687,92.204,94.452)
N3: (8.350,96.246,96.280)
OP1: (6.540,87.930,95.743)
OP2: (8.701,89.271,95.542)
C2: (7.073,95.884,96.625)
C1': (5.469,94.081,96.962)
C3': (4.744,92.604,95.291)
O5': (6.561,90.422,96.109)
O4': (5.510,92.755,97.473)
C5': (5.244,90.487,96.664)
P: (7.388,89.064,96.179)
C4': (4.710,91.896,96.626)
C2': (4.597,94.053,95.709)
O2': (3.275,94.376,96.055)
N1: (6.836,94.520,96.642)
O4: (10.461,95.897,95.605)
O2: (6.217,96.709,96.895)
C6: (7.848,93.622,96.348)
C5: (9.081,94.011,96.014)
O3': (3.687,92.204,94.452)
OP1: (-5.669,92.368,97.750)
OP2: (-5.294,94.460,99.205)
C3': (-0.804,92.715,97.608)
C1': (0.091,94.568,96.470)
C5': (-3.087,92.877,96.464)
O4': (-1.172,94.267,95.903)
C8: (-1.206,96.322,97.775)
O2': (1.252,92.472,96.380)
C6: (1.144,98.771,98.737)
C5: (0.326,97.704,98.293)
C4: (0.951,96.670,97.616)
P: (-5.095,93.727,97.922)
C4': (-1.588,92.947,96.335)
C2': (0.537,93.329,97.250)
C2: (2.927,97.629,97.815)
N1: (2.465,98.698,98.479)
N3: (2.263,96.571,97.342)
N6: (0.684,99.840,99.387)
N7: (-1.037,97.469,98.390)
N9: (-0.049,95.791,97.264)
O5': (-3.537,93.594,97.629)
O3': (-0.707,91.334,97.909)
OP2: (-5.294,94.460,99.205)
C3': (-0.804,92.715,97.608)
C1': (0.091,94.568,96.470)
C5': (-3.087,92.877,96.464)
O4': (-1.172,94.267,95.903)
C8: (-1.206,96.322,97.775)
O2': (1.252,92.472,96.380)
C6: (1.144,98.771,98.737)
C5: (0.326,97.704,98.293)
C4: (0.951,96.670,97.616)
P: (-5.095,93.727,97.922)
C4': (-1.588,92.947,96.335)
C2': (0.537,93.329,97.250)
C2: (2.927,97.629,97.815)
N1: (2.465,98.698,98.479)
N3: (2.263,96.571,97.342)
N6: (0.684,99.840,99.387)
N7: (-1.037,97.469,98.390)
N9: (-0.049,95.791,97.264)
O5': (-3.537,93.594,97.629)
O3': (-0.707,91.334,97.909)
Image (generated by PyMOL):