ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:02024:01037

Extra

PDB:
ATOM 1 O3' C A2023 33.407 116.579 106.339 1.00 41.82 O
ATOM 2 P U A2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 3 OP1 U A2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 4 OP2 U A2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 5 O5' U A2024 32.991 116.383 108.817 1.00 39.07 O
ATOM 6 C5' U A2024 32.770 114.996 109.056 1.00 40.45 C
ATOM 7 C4' U A2024 33.275 114.621 110.417 1.00 40.12 C
ATOM 8 O4' U A2024 34.719 114.579 110.417 1.00 40.75 O
ATOM 9 C3' U A2024 32.928 115.595 111.521 1.00 39.41 C
ATOM 10 O3' U A2024 31.620 115.357 111.994 1.00 41.52 O
ATOM 11 C2' U A2024 33.985 115.265 112.555 1.00 39.67 C
ATOM 12 O2' U A2024 33.691 114.037 113.183 1.00 39.79 O
ATOM 13 C1' U A2024 35.207 115.054 111.662 1.00 40.59 C
ATOM 14 N1 U A2024 35.982 116.284 111.412 1.00 40.85 N
ATOM 15 C2 U A2024 36.864 116.712 112.388 1.00 40.04 C
ATOM 16 O2 U A2024 37.021 116.132 113.444 1.00 39.95 O
ATOM 17 N3 U A2024 37.562 117.849 112.073 1.00 40.96 N
ATOM 18 C4 U A2024 37.479 118.583 110.906 1.00 41.88 C
ATOM 19 O4 U A2024 38.238 119.540 110.735 1.00 42.30 O
ATOM 20 C5 U A2024 36.542 118.086 109.957 1.00 41.14 C
ATOM 21 C6 U A2024 35.842 116.987 110.233 1.00 41.02 C
ATOM 22 P G A2025 30.792 116.545 112.693 1.00 44.16 P
ATOM 23 OP1 G A2025 29.446 115.967 112.936 1.00 45.02 O
ATOM 24 OP2 G A2025 30.922 117.813 111.924 1.00 42.55 O
ATOM 25 O5' G A2025 31.515 116.731 114.096 1.00 42.07 O
TER

ATOM 1 O3' G B1036 32.062 104.988 115.169 1.00 48.42 O
ATOM 2 P A B1037 32.921 106.307 115.558 1.00 49.40 P
ATOM 3 OP1 A B1037 34.371 105.983 115.429 1.00 47.99 O
ATOM 4 OP2 A B1037 32.382 106.766 116.867 1.00 47.25 O
ATOM 5 O5' A B1037 32.575 107.422 114.473 1.00 46.22 O
ATOM 6 C5' A B1037 31.288 108.065 114.433 1.00 43.51 C
ATOM 7 C4' A B1037 31.450 109.502 114.027 1.00 41.06 C
ATOM 8 O4' A B1037 32.147 110.209 115.078 1.00 42.33 O
ATOM 9 C3' A B1037 32.318 109.703 112.803 1.00 41.73 C
ATOM 10 O3' A B1037 31.555 109.555 111.625 1.00 39.86 O
ATOM 11 C2' A B1037 32.868 111.110 112.994 1.00 42.45 C
ATOM 12 O2' A B1037 31.946 112.111 112.612 1.00 43.40 O
ATOM 13 C1' A B1037 33.036 111.161 114.513 1.00 42.07 C
ATOM 14 N9 A B1037 34.370 110.912 115.066 1.00 41.06 N
ATOM 15 C8 A B1037 34.894 109.713 115.487 1.00 40.51 C
ATOM 16 N7 A B1037 36.045 109.827 116.100 1.00 40.05 N
ATOM 17 C5 A B1037 36.313 111.187 116.051 1.00 39.32 C
ATOM 18 C6 A B1037 37.364 111.962 116.572 1.00 39.49 C
ATOM 19 N6 A B1037 38.354 111.465 117.308 1.00 38.00 N
ATOM 20 N1 A B1037 37.349 113.289 116.324 1.00 41.32 N
ATOM 21 C2 A B1037 36.329 113.793 115.615 1.00 42.22 C
ATOM 22 N3 A B1037 35.269 113.169 115.099 1.00 40.47 N
ATOM 23 C4 A B1037 35.319 111.856 115.363 1.00 39.12 C
ATOM 24 P A B1038 32.108 108.624 110.450 1.00 42.60 P
ATOM 25 OP1 A B1038 30.952 108.274 109.578 1.00 41.21 O
ATOM 26 OP2 A B1038 32.931 107.536 111.062 1.00 41.88 O
ATOM 27 O5' A B1038 33.123 109.559 109.656 1.00 40.83 O
TER

Atoms:
C4: (37.479,118.583,110.906)
N3: (37.562,117.849,112.073)
OP1: (31.090,116.458,107.199)
OP2: (32.547,118.541,107.657)
C2: (36.864,116.712,112.388)
C1': (35.207,115.054,111.662)
C3': (32.928,115.595,111.521)
O5': (32.991,116.383,108.817)
O4': (34.719,114.579,110.417)
C5': (32.770,114.996,109.056)
P: (32.420,117.067,107.504)
C4': (33.275,114.621,110.417)
C2': (33.985,115.265,112.555)
O2': (33.691,114.037,113.183)
N1: (35.982,116.284,111.412)
O4: (38.238,119.540,110.735)
O2: (37.021,116.132,113.444)
C6: (35.842,116.987,110.233)
C5: (36.542,118.086,109.957)
O3': (31.620,115.357,111.994)
OP1: (34.371,105.983,115.429)
OP2: (32.382,106.766,116.867)
C3': (32.318,109.703,112.803)
C1': (33.036,111.161,114.513)
C5': (31.288,108.065,114.433)
O4': (32.147,110.209,115.078)
C8: (34.894,109.713,115.487)
O2': (31.946,112.111,112.612)
C6: (37.364,111.962,116.572)
C5: (36.313,111.187,116.051)
C4: (35.319,111.856,115.363)
P: (32.921,106.307,115.558)
C4': (31.450,109.502,114.027)
C2': (32.868,111.110,112.994)
C2: (36.329,113.793,115.615)
N1: (37.349,113.289,116.324)
N3: (35.269,113.169,115.099)
N6: (38.354,111.465,117.308)
N7: (36.045,109.827,116.100)
N9: (34.370,110.912,115.066)
O5': (32.575,107.422,114.473)
O3': (31.555,109.555,111.625)
Image (generated by PyMOL):
PyMOL image
show in jmol