Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1460:A1539
Extra
PDB:
ATOM 1 O3' U A1459 6.230 -36.429 1.490 1.00 7.32 O
ATOM 2 P U A1460 5.270 -35.186 1.740 1.00 6.62 P
ATOM 3 OP1 U A1460 4.430 -35.031 0.516 1.00 6.62 O
ATOM 4 OP2 U A1460 6.131 -34.054 2.176 1.00 6.62 O
ATOM 5 O5' U A1460 4.374 -35.711 2.956 1.00 6.62 O
ATOM 6 C5' U A1460 3.481 -36.813 2.767 1.00 6.62 C
ATOM 7 C4' U A1460 3.280 -37.608 4.034 1.00 6.62 C
ATOM 8 O4' U A1460 4.300 -38.627 4.121 1.00 6.62 O
ATOM 9 C3' U A1460 3.422 -36.830 5.329 1.00 6.62 C
ATOM 10 O3' U A1460 2.254 -36.131 5.718 1.00 6.62 O
ATOM 11 C2' U A1460 3.843 -37.882 6.323 1.00 6.62 C
ATOM 12 O2' U A1460 2.713 -38.608 6.764 1.00 6.62 O
ATOM 13 C1' U A1460 4.716 -38.786 5.455 1.00 6.62 C
ATOM 14 N1 U A1460 6.142 -38.425 5.525 1.00 6.44 N
ATOM 15 C2 U A1460 6.919 -38.775 6.624 1.00 6.44 C
ATOM 16 O2 U A1460 6.500 -39.368 7.589 1.00 6.44 O
ATOM 17 N3 U A1460 8.233 -38.406 6.577 1.00 6.44 N
ATOM 18 C4 U A1460 8.841 -37.729 5.550 1.00 6.44 C
ATOM 19 O4 U A1460 10.037 -37.466 5.648 1.00 6.44 O
ATOM 20 C5 U A1460 7.986 -37.407 4.438 1.00 6.44 C
ATOM 21 C6 U A1460 6.693 -37.765 4.459 1.00 6.44 C
ATOM 22 P U A1461 2.451 -34.760 6.516 1.00 0.96 P
ATOM 23 OP1 U A1461 1.151 -34.031 6.517 1.00 0.96 O
ATOM 24 OP2 U A1461 3.644 -34.108 5.906 1.00 0.96 O
ATOM 25 O5' U A1461 2.796 -35.274 7.990 1.00 0.96 O
TER
ATOM 1 O3' A B1538 14.747 -35.597 -1.673 1.00 5.36 O
ATOM 2 P G B1539 15.266 -34.680 -0.489 1.00 1.87 P
ATOM 3 OP1 G B1539 15.641 -33.385 -1.093 1.00 1.87 O
ATOM 4 OP2 G B1539 16.280 -35.451 0.240 1.00 1.87 O
ATOM 5 O5' G B1539 13.971 -34.507 0.395 1.00 1.87 O
ATOM 6 C5' G B1539 12.760 -34.112 -0.209 1.00 1.87 C
ATOM 7 C4' G B1539 11.583 -34.769 0.437 1.00 1.87 C
ATOM 8 O4' G B1539 11.714 -36.206 0.371 1.00 1.87 O
ATOM 9 C3' G B1539 11.397 -34.511 1.914 1.00 1.87 C
ATOM 10 O3' G B1539 10.866 -33.245 2.183 1.00 1.87 O
ATOM 11 C2' G B1539 10.452 -35.615 2.292 1.00 1.87 C
ATOM 12 O2' G B1539 9.138 -35.282 1.888 1.00 1.87 O
ATOM 13 C1' G B1539 10.977 -36.771 1.431 1.00 1.87 C
ATOM 14 N9 G B1539 11.853 -37.648 2.215 1.00 2.02 N
ATOM 15 C8 G B1539 13.207 -37.618 2.325 1.00 2.02 C
ATOM 16 N7 G B1539 13.667 -38.501 3.168 1.00 2.02 N
ATOM 17 C5 G B1539 12.541 -39.119 3.636 1.00 2.02 C
ATOM 18 C6 G B1539 12.422 -40.140 4.565 1.00 2.02 C
ATOM 19 O6 G B1539 13.342 -40.697 5.152 1.00 2.02 O
ATOM 20 N1 G B1539 11.103 -40.496 4.784 1.00 2.02 N
ATOM 21 C2 G B1539 10.026 -39.932 4.178 1.00 2.02 C
ATOM 22 N2 G B1539 8.817 -40.404 4.519 1.00 2.02 N
ATOM 23 N3 G B1539 10.141 -38.962 3.308 1.00 2.02 N
ATOM 24 C4 G B1539 11.415 -38.609 3.083 1.00 2.02 C
ATOM 25 P C B1540 11.748 -32.130 2.927 1.00 1.25 P
ATOM 26 OP1 C B1540 12.967 -32.792 3.500 1.00 1.25 O
ATOM 27 OP2 C B1540 10.825 -31.388 3.841 1.00 1.25 O
ATOM 28 O5' C B1540 12.166 -31.217 1.720 1.00 1.25 O
TER
ATOM 2 P U A1460 5.270 -35.186 1.740 1.00 6.62 P
ATOM 3 OP1 U A1460 4.430 -35.031 0.516 1.00 6.62 O
ATOM 4 OP2 U A1460 6.131 -34.054 2.176 1.00 6.62 O
ATOM 5 O5' U A1460 4.374 -35.711 2.956 1.00 6.62 O
ATOM 6 C5' U A1460 3.481 -36.813 2.767 1.00 6.62 C
ATOM 7 C4' U A1460 3.280 -37.608 4.034 1.00 6.62 C
ATOM 8 O4' U A1460 4.300 -38.627 4.121 1.00 6.62 O
ATOM 9 C3' U A1460 3.422 -36.830 5.329 1.00 6.62 C
ATOM 10 O3' U A1460 2.254 -36.131 5.718 1.00 6.62 O
ATOM 11 C2' U A1460 3.843 -37.882 6.323 1.00 6.62 C
ATOM 12 O2' U A1460 2.713 -38.608 6.764 1.00 6.62 O
ATOM 13 C1' U A1460 4.716 -38.786 5.455 1.00 6.62 C
ATOM 14 N1 U A1460 6.142 -38.425 5.525 1.00 6.44 N
ATOM 15 C2 U A1460 6.919 -38.775 6.624 1.00 6.44 C
ATOM 16 O2 U A1460 6.500 -39.368 7.589 1.00 6.44 O
ATOM 17 N3 U A1460 8.233 -38.406 6.577 1.00 6.44 N
ATOM 18 C4 U A1460 8.841 -37.729 5.550 1.00 6.44 C
ATOM 19 O4 U A1460 10.037 -37.466 5.648 1.00 6.44 O
ATOM 20 C5 U A1460 7.986 -37.407 4.438 1.00 6.44 C
ATOM 21 C6 U A1460 6.693 -37.765 4.459 1.00 6.44 C
ATOM 22 P U A1461 2.451 -34.760 6.516 1.00 0.96 P
ATOM 23 OP1 U A1461 1.151 -34.031 6.517 1.00 0.96 O
ATOM 24 OP2 U A1461 3.644 -34.108 5.906 1.00 0.96 O
ATOM 25 O5' U A1461 2.796 -35.274 7.990 1.00 0.96 O
TER
ATOM 1 O3' A B1538 14.747 -35.597 -1.673 1.00 5.36 O
ATOM 2 P G B1539 15.266 -34.680 -0.489 1.00 1.87 P
ATOM 3 OP1 G B1539 15.641 -33.385 -1.093 1.00 1.87 O
ATOM 4 OP2 G B1539 16.280 -35.451 0.240 1.00 1.87 O
ATOM 5 O5' G B1539 13.971 -34.507 0.395 1.00 1.87 O
ATOM 6 C5' G B1539 12.760 -34.112 -0.209 1.00 1.87 C
ATOM 7 C4' G B1539 11.583 -34.769 0.437 1.00 1.87 C
ATOM 8 O4' G B1539 11.714 -36.206 0.371 1.00 1.87 O
ATOM 9 C3' G B1539 11.397 -34.511 1.914 1.00 1.87 C
ATOM 10 O3' G B1539 10.866 -33.245 2.183 1.00 1.87 O
ATOM 11 C2' G B1539 10.452 -35.615 2.292 1.00 1.87 C
ATOM 12 O2' G B1539 9.138 -35.282 1.888 1.00 1.87 O
ATOM 13 C1' G B1539 10.977 -36.771 1.431 1.00 1.87 C
ATOM 14 N9 G B1539 11.853 -37.648 2.215 1.00 2.02 N
ATOM 15 C8 G B1539 13.207 -37.618 2.325 1.00 2.02 C
ATOM 16 N7 G B1539 13.667 -38.501 3.168 1.00 2.02 N
ATOM 17 C5 G B1539 12.541 -39.119 3.636 1.00 2.02 C
ATOM 18 C6 G B1539 12.422 -40.140 4.565 1.00 2.02 C
ATOM 19 O6 G B1539 13.342 -40.697 5.152 1.00 2.02 O
ATOM 20 N1 G B1539 11.103 -40.496 4.784 1.00 2.02 N
ATOM 21 C2 G B1539 10.026 -39.932 4.178 1.00 2.02 C
ATOM 22 N2 G B1539 8.817 -40.404 4.519 1.00 2.02 N
ATOM 23 N3 G B1539 10.141 -38.962 3.308 1.00 2.02 N
ATOM 24 C4 G B1539 11.415 -38.609 3.083 1.00 2.02 C
ATOM 25 P C B1540 11.748 -32.130 2.927 1.00 1.25 P
ATOM 26 OP1 C B1540 12.967 -32.792 3.500 1.00 1.25 O
ATOM 27 OP2 C B1540 10.825 -31.388 3.841 1.00 1.25 O
ATOM 28 O5' C B1540 12.166 -31.217 1.720 1.00 1.25 O
TER
Atoms:
C4: (8.841,-37.729,5.550)
N3: (8.233,-38.406,6.577)
OP1: (4.430,-35.031,0.516)
OP2: (6.131,-34.054,2.176)
C2: (6.919,-38.775,6.624)
C1': (4.716,-38.786,5.455)
C3': (3.422,-36.830,5.329)
O5': (4.374,-35.711,2.956)
O4': (4.300,-38.627,4.121)
C5': (3.481,-36.813,2.767)
P: (5.270,-35.186,1.740)
C4': (3.280,-37.608,4.034)
C2': (3.843,-37.882,6.323)
O2': (2.713,-38.608,6.764)
N1: (6.142,-38.425,5.525)
O4: (10.037,-37.466,5.648)
O2: (6.500,-39.368,7.589)
C6: (6.693,-37.765,4.459)
C5: (7.986,-37.407,4.438)
O3': (2.254,-36.131,5.718)
N3: (8.233,-38.406,6.577)
OP1: (4.430,-35.031,0.516)
OP2: (6.131,-34.054,2.176)
C2: (6.919,-38.775,6.624)
C1': (4.716,-38.786,5.455)
C3': (3.422,-36.830,5.329)
O5': (4.374,-35.711,2.956)
O4': (4.300,-38.627,4.121)
C5': (3.481,-36.813,2.767)
P: (5.270,-35.186,1.740)
C4': (3.280,-37.608,4.034)
C2': (3.843,-37.882,6.323)
O2': (2.713,-38.608,6.764)
N1: (6.142,-38.425,5.525)
O4: (10.037,-37.466,5.648)
O2: (6.500,-39.368,7.589)
C6: (6.693,-37.765,4.459)
C5: (7.986,-37.407,4.438)
O3': (2.254,-36.131,5.718)
OP1: (15.641,-33.385,-1.093)
OP2: (16.280,-35.451,0.240)
C3': (11.397,-34.511,1.914)
C1': (10.977,-36.771,1.431)
C5': (12.760,-34.112,-0.209)
O6: (13.342,-40.697,5.152)
O4': (11.714,-36.206,0.371)
C8: (13.207,-37.618,2.325)
C2: (10.026,-39.932,4.178)
C6: (12.422,-40.140,4.565)
C5: (12.541,-39.119,3.636)
C4: (11.415,-38.609,3.083)
P: (15.266,-34.680,-0.489)
C4': (11.583,-34.769,0.437)
C2': (10.452,-35.615,2.292)
O2': (9.138,-35.282,1.888)
N1: (11.103,-40.496,4.784)
N2: (8.817,-40.404,4.519)
N3: (10.141,-38.962,3.308)
N7: (13.667,-38.501,3.168)
N9: (11.853,-37.648,2.215)
O5': (13.971,-34.507,0.395)
O3': (10.866,-33.245,2.183)
OP2: (16.280,-35.451,0.240)
C3': (11.397,-34.511,1.914)
C1': (10.977,-36.771,1.431)
C5': (12.760,-34.112,-0.209)
O6: (13.342,-40.697,5.152)
O4': (11.714,-36.206,0.371)
C8: (13.207,-37.618,2.325)
C2: (10.026,-39.932,4.178)
C6: (12.422,-40.140,4.565)
C5: (12.541,-39.119,3.636)
C4: (11.415,-38.609,3.083)
P: (15.266,-34.680,-0.489)
C4': (11.583,-34.769,0.437)
C2': (10.452,-35.615,2.292)
O2': (9.138,-35.282,1.888)
N1: (11.103,-40.496,4.784)
N2: (8.817,-40.404,4.519)
N3: (10.141,-38.962,3.308)
N7: (13.667,-38.501,3.168)
N9: (11.853,-37.648,2.215)
O5': (13.971,-34.507,0.395)
O3': (10.866,-33.245,2.183)
Image (generated by PyMOL):