Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1267:1315
Extra
PDB:
ATOM 1 O3' G A 266 34.477 -42.105 128.134 1.00 55.73 O
ATOM 2 P U A 267 35.507 -41.182 127.298 1.00 50.40 P
ATOM 3 OP1 U A 267 35.531 -39.817 127.951 1.00 50.41 O
ATOM 4 OP2 U A 267 35.133 -41.280 125.847 1.00 49.87 O
ATOM 5 O5' U A 267 36.891 -41.911 127.552 1.00 50.67 O
ATOM 6 C5' U A 267 37.475 -42.659 126.533 1.00 50.45 C
ATOM 7 C4' U A 267 38.388 -43.702 127.072 1.00 50.89 C
ATOM 8 O4' U A 267 37.787 -44.357 128.198 1.00 51.42 O
ATOM 9 C3' U A 267 38.673 -44.812 126.112 1.00 50.76 C
ATOM 10 O3' U A 267 39.649 -44.453 125.184 1.00 50.39 O
ATOM 11 C2' U A 267 39.051 -45.978 127.006 1.00 51.35 C
ATOM 12 O2' U A 267 40.418 -45.918 127.381 1.00 51.54 O
ATOM 13 C1' U A 267 38.202 -45.703 128.243 1.00 51.73 C
ATOM 14 N1 U A 267 37.013 -46.565 128.321 1.00 51.90 N
ATOM 15 C2 U A 267 37.146 -47.930 128.342 1.00 52.21 C
ATOM 16 O2 U A 267 38.175 -48.525 128.272 1.00 52.35 O
ATOM 17 N3 U A 267 36.025 -48.663 128.436 1.00 52.37 N
ATOM 18 C4 U A 267 34.785 -48.166 128.515 1.00 52.25 C
ATOM 19 O4 U A 267 33.879 -48.973 128.613 1.00 52.45 O
ATOM 20 C5 U A 267 34.693 -46.745 128.484 1.00 51.93 C
ATOM 21 C6 U A 267 35.781 -45.997 128.407 1.00 51.77 C
ATOM 22 P C A 268 39.362 -44.684 123.654 1.00 56.90 P
ATOM 23 OP1 C A 268 40.469 -44.034 122.894 1.00 56.54 O
ATOM 24 OP2 C A 268 37.938 -44.241 123.383 1.00 56.66 O
ATOM 25 O5' C A 268 39.461 -46.275 123.545 1.00 57.19 O
TER
ATOM 1 O3' A B 314 49.059 -46.134 126.625 1.00 49.49 O
ATOM 2 P A B 315 48.645 -45.171 127.836 1.00 50.35 P
ATOM 3 OP1 A B 315 49.268 -43.832 127.631 1.00 50.05 O
ATOM 4 OP2 A B 315 48.949 -45.927 129.111 1.00 51.04 O
ATOM 5 O5' A B 315 47.096 -45.048 127.647 1.00 50.13 O
ATOM 6 C5' A B 315 46.529 -43.846 127.222 1.00 49.67 C
ATOM 7 C4' A B 315 45.048 -43.938 127.301 1.00 49.61 C
ATOM 8 O4' A B 315 44.656 -45.301 127.059 1.00 49.77 O
ATOM 9 C3' A B 315 44.447 -43.606 128.647 1.00 50.03 C
ATOM 10 O3' A B 315 44.266 -42.214 128.811 1.00 49.81 O
ATOM 11 C2' A B 315 43.147 -44.379 128.632 1.00 50.09 C
ATOM 12 O2' A B 315 42.174 -43.652 127.910 1.00 49.61 O
ATOM 13 C1' A B 315 43.516 -45.605 127.802 1.00 50.05 C
ATOM 14 N9 A B 315 43.790 -46.807 128.607 1.00 50.63 N
ATOM 15 C8 A B 315 45.009 -47.334 128.897 1.00 50.94 C
ATOM 16 N7 A B 315 44.941 -48.450 129.570 1.00 51.45 N
ATOM 17 C5 A B 315 43.610 -48.685 129.683 1.00 51.46 C
ATOM 18 C6 A B 315 42.937 -49.710 130.295 1.00 51.90 C
ATOM 19 N6 A B 315 43.585 -50.693 130.916 1.00 52.42 N
ATOM 20 N1 A B 315 41.576 -49.675 130.231 1.00 51.78 N
ATOM 21 C2 A B 315 40.978 -48.653 129.617 1.00 51.27 C
ATOM 22 N3 A B 315 41.546 -47.625 129.007 1.00 50.83 N
ATOM 23 C4 A B 315 42.876 -47.705 129.091 1.00 50.96 C
ATOM 24 P A B 316 44.401 -41.552 130.258 1.00 49.29 P
ATOM 25 OP1 A B 316 43.363 -42.133 131.101 1.00 49.67 O
ATOM 26 OP2 A B 316 44.401 -40.089 130.064 1.00 48.95 O
ATOM 27 O5' A B 316 45.836 -42.069 130.754 1.00 49.69 O
TER
ATOM 2 P U A 267 35.507 -41.182 127.298 1.00 50.40 P
ATOM 3 OP1 U A 267 35.531 -39.817 127.951 1.00 50.41 O
ATOM 4 OP2 U A 267 35.133 -41.280 125.847 1.00 49.87 O
ATOM 5 O5' U A 267 36.891 -41.911 127.552 1.00 50.67 O
ATOM 6 C5' U A 267 37.475 -42.659 126.533 1.00 50.45 C
ATOM 7 C4' U A 267 38.388 -43.702 127.072 1.00 50.89 C
ATOM 8 O4' U A 267 37.787 -44.357 128.198 1.00 51.42 O
ATOM 9 C3' U A 267 38.673 -44.812 126.112 1.00 50.76 C
ATOM 10 O3' U A 267 39.649 -44.453 125.184 1.00 50.39 O
ATOM 11 C2' U A 267 39.051 -45.978 127.006 1.00 51.35 C
ATOM 12 O2' U A 267 40.418 -45.918 127.381 1.00 51.54 O
ATOM 13 C1' U A 267 38.202 -45.703 128.243 1.00 51.73 C
ATOM 14 N1 U A 267 37.013 -46.565 128.321 1.00 51.90 N
ATOM 15 C2 U A 267 37.146 -47.930 128.342 1.00 52.21 C
ATOM 16 O2 U A 267 38.175 -48.525 128.272 1.00 52.35 O
ATOM 17 N3 U A 267 36.025 -48.663 128.436 1.00 52.37 N
ATOM 18 C4 U A 267 34.785 -48.166 128.515 1.00 52.25 C
ATOM 19 O4 U A 267 33.879 -48.973 128.613 1.00 52.45 O
ATOM 20 C5 U A 267 34.693 -46.745 128.484 1.00 51.93 C
ATOM 21 C6 U A 267 35.781 -45.997 128.407 1.00 51.77 C
ATOM 22 P C A 268 39.362 -44.684 123.654 1.00 56.90 P
ATOM 23 OP1 C A 268 40.469 -44.034 122.894 1.00 56.54 O
ATOM 24 OP2 C A 268 37.938 -44.241 123.383 1.00 56.66 O
ATOM 25 O5' C A 268 39.461 -46.275 123.545 1.00 57.19 O
TER
ATOM 1 O3' A B 314 49.059 -46.134 126.625 1.00 49.49 O
ATOM 2 P A B 315 48.645 -45.171 127.836 1.00 50.35 P
ATOM 3 OP1 A B 315 49.268 -43.832 127.631 1.00 50.05 O
ATOM 4 OP2 A B 315 48.949 -45.927 129.111 1.00 51.04 O
ATOM 5 O5' A B 315 47.096 -45.048 127.647 1.00 50.13 O
ATOM 6 C5' A B 315 46.529 -43.846 127.222 1.00 49.67 C
ATOM 7 C4' A B 315 45.048 -43.938 127.301 1.00 49.61 C
ATOM 8 O4' A B 315 44.656 -45.301 127.059 1.00 49.77 O
ATOM 9 C3' A B 315 44.447 -43.606 128.647 1.00 50.03 C
ATOM 10 O3' A B 315 44.266 -42.214 128.811 1.00 49.81 O
ATOM 11 C2' A B 315 43.147 -44.379 128.632 1.00 50.09 C
ATOM 12 O2' A B 315 42.174 -43.652 127.910 1.00 49.61 O
ATOM 13 C1' A B 315 43.516 -45.605 127.802 1.00 50.05 C
ATOM 14 N9 A B 315 43.790 -46.807 128.607 1.00 50.63 N
ATOM 15 C8 A B 315 45.009 -47.334 128.897 1.00 50.94 C
ATOM 16 N7 A B 315 44.941 -48.450 129.570 1.00 51.45 N
ATOM 17 C5 A B 315 43.610 -48.685 129.683 1.00 51.46 C
ATOM 18 C6 A B 315 42.937 -49.710 130.295 1.00 51.90 C
ATOM 19 N6 A B 315 43.585 -50.693 130.916 1.00 52.42 N
ATOM 20 N1 A B 315 41.576 -49.675 130.231 1.00 51.78 N
ATOM 21 C2 A B 315 40.978 -48.653 129.617 1.00 51.27 C
ATOM 22 N3 A B 315 41.546 -47.625 129.007 1.00 50.83 N
ATOM 23 C4 A B 315 42.876 -47.705 129.091 1.00 50.96 C
ATOM 24 P A B 316 44.401 -41.552 130.258 1.00 49.29 P
ATOM 25 OP1 A B 316 43.363 -42.133 131.101 1.00 49.67 O
ATOM 26 OP2 A B 316 44.401 -40.089 130.064 1.00 48.95 O
ATOM 27 O5' A B 316 45.836 -42.069 130.754 1.00 49.69 O
TER
Atoms:
C4: (34.785,-48.166,128.515)
N3: (36.025,-48.663,128.436)
OP1: (35.531,-39.817,127.951)
OP2: (35.133,-41.280,125.847)
C2: (37.146,-47.930,128.342)
C1': (38.202,-45.703,128.243)
C3': (38.673,-44.812,126.112)
O5': (36.891,-41.911,127.552)
O4': (37.787,-44.357,128.198)
C5': (37.475,-42.659,126.533)
P: (35.507,-41.182,127.298)
C4': (38.388,-43.702,127.072)
C2': (39.051,-45.978,127.006)
O2': (40.418,-45.918,127.381)
N1: (37.013,-46.565,128.321)
O4: (33.879,-48.973,128.613)
O2: (38.175,-48.525,128.272)
C6: (35.781,-45.997,128.407)
C5: (34.693,-46.745,128.484)
O3': (39.649,-44.453,125.184)
N3: (36.025,-48.663,128.436)
OP1: (35.531,-39.817,127.951)
OP2: (35.133,-41.280,125.847)
C2: (37.146,-47.930,128.342)
C1': (38.202,-45.703,128.243)
C3': (38.673,-44.812,126.112)
O5': (36.891,-41.911,127.552)
O4': (37.787,-44.357,128.198)
C5': (37.475,-42.659,126.533)
P: (35.507,-41.182,127.298)
C4': (38.388,-43.702,127.072)
C2': (39.051,-45.978,127.006)
O2': (40.418,-45.918,127.381)
N1: (37.013,-46.565,128.321)
O4: (33.879,-48.973,128.613)
O2: (38.175,-48.525,128.272)
C6: (35.781,-45.997,128.407)
C5: (34.693,-46.745,128.484)
O3': (39.649,-44.453,125.184)
OP1: (49.268,-43.832,127.631)
OP2: (48.949,-45.927,129.111)
C3': (44.447,-43.606,128.647)
C1': (43.516,-45.605,127.802)
C5': (46.529,-43.846,127.222)
O4': (44.656,-45.301,127.059)
C8: (45.009,-47.334,128.897)
O2': (42.174,-43.652,127.910)
C6: (42.937,-49.710,130.295)
C5: (43.610,-48.685,129.683)
C4: (42.876,-47.705,129.091)
P: (48.645,-45.171,127.836)
C4': (45.048,-43.938,127.301)
C2': (43.147,-44.379,128.632)
C2: (40.978,-48.653,129.617)
N1: (41.576,-49.675,130.231)
N3: (41.546,-47.625,129.007)
N6: (43.585,-50.693,130.916)
N7: (44.941,-48.450,129.570)
N9: (43.790,-46.807,128.607)
O5': (47.096,-45.048,127.647)
O3': (44.266,-42.214,128.811)
OP2: (48.949,-45.927,129.111)
C3': (44.447,-43.606,128.647)
C1': (43.516,-45.605,127.802)
C5': (46.529,-43.846,127.222)
O4': (44.656,-45.301,127.059)
C8: (45.009,-47.334,128.897)
O2': (42.174,-43.652,127.910)
C6: (42.937,-49.710,130.295)
C5: (43.610,-48.685,129.683)
C4: (42.876,-47.705,129.091)
P: (48.645,-45.171,127.836)
C4': (45.048,-43.938,127.301)
C2': (43.147,-44.379,128.632)
C2: (40.978,-48.653,129.617)
N1: (41.576,-49.675,130.231)
N3: (41.546,-47.625,129.007)
N6: (43.585,-50.693,130.916)
N7: (44.941,-48.450,129.570)
N9: (43.790,-46.807,128.607)
O5': (47.096,-45.048,127.647)
O3': (44.266,-42.214,128.811)
Image (generated by PyMOL):