ClaRNA

Doublet info:

Details

Nucleotide types: UG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2GDI:Y42:Y41

Extra

PDB:
ATOM 1 O3' G A 41 28.242 4.224 68.754 1.00 33.11 O
ATOM 2 P U A 42 29.596 4.699 69.461 1.00 34.24 P
ATOM 3 OP1 U A 42 30.253 5.700 68.590 1.00 33.73 O
ATOM 4 OP2 U A 42 30.332 3.487 69.883 1.00 33.95 O
ATOM 5 O5' U A 42 29.060 5.426 70.781 1.00 36.06 O
ATOM 6 C5' U A 42 28.446 6.709 70.699 1.00 38.68 C
ATOM 7 C4' U A 42 27.670 7.022 71.967 1.00 40.91 C
ATOM 8 O4' U A 42 26.443 6.249 71.994 1.00 41.19 O
ATOM 9 C3' U A 42 28.390 6.707 73.273 1.00 42.29 C
ATOM 10 O3' U A 42 28.033 7.665 74.268 1.00 43.94 O
ATOM 11 C2' U A 42 27.878 5.310 73.616 1.00 42.40 C
ATOM 12 O2' U A 42 27.884 5.053 75.007 1.00 42.57 O
ATOM 13 C1' U A 42 26.448 5.353 73.089 1.00 42.65 C
ATOM 14 N1 U A 42 25.948 4.038 72.597 1.00 43.24 N
ATOM 15 C2 U A 42 25.152 3.255 73.411 1.00 43.71 C
ATOM 16 O2 U A 42 24.827 3.577 74.541 1.00 43.58 O
ATOM 17 N3 U A 42 24.745 2.069 72.848 1.00 43.87 N
ATOM 18 C4 U A 42 25.047 1.599 71.582 1.00 44.19 C
ATOM 19 O4 U A 42 24.613 0.512 71.209 1.00 44.08 O
ATOM 20 C5 U A 42 25.880 2.472 70.795 1.00 44.06 C
ATOM 21 C6 U A 42 26.287 3.632 71.322 1.00 43.79 C
ATOM 22 P A A 43 28.681 9.131 74.248 1.00 45.10 P
ATOM 23 OP1 A A 43 29.869 9.096 73.365 1.00 45.00 O
ATOM 24 OP2 A A 43 28.814 9.580 75.653 1.00 44.94 O
ATOM 25 O5' A A 43 27.562 10.035 73.550 1.00 44.89 O
TER

ATOM 1 O3' C B 40 27.230 8.153 63.993 1.00 33.39 O
ATOM 2 P G B 41 28.421 7.730 64.977 1.00 32.81 P
ATOM 3 OP1 G B 41 28.373 8.622 66.155 1.00 33.60 O
ATOM 4 OP2 G B 41 29.661 7.638 64.177 1.00 34.02 O
ATOM 5 O5' G B 41 28.025 6.246 65.419 1.00 33.54 O
ATOM 6 C5' G B 41 27.014 6.011 66.396 1.00 32.92 C
ATOM 7 C4' G B 41 26.953 4.532 66.745 1.00 32.22 C
ATOM 8 O4' G B 41 26.768 3.751 65.539 1.00 31.94 O
ATOM 9 C3' G B 41 28.222 3.962 67.358 1.00 32.71 C
ATOM 10 O3' G B 41 28.242 4.224 68.754 1.00 33.11 O
ATOM 11 C2' G B 41 28.079 2.473 67.048 1.00 32.62 C
ATOM 12 O2' G B 41 27.221 1.803 67.953 1.00 33.14 O
ATOM 13 C1' G B 41 27.436 2.505 65.664 1.00 31.82 C
ATOM 14 N9 G B 41 28.387 2.357 64.563 1.00 31.48 N
ATOM 15 C8 G B 41 28.903 3.360 63.775 1.00 30.97 C
ATOM 16 N7 G B 41 29.730 2.929 62.863 1.00 30.73 N
ATOM 17 C5 G B 41 29.764 1.553 63.051 1.00 30.62 C
ATOM 18 C6 G B 41 30.489 0.552 62.355 1.00 30.76 C
ATOM 19 O6 G B 41 31.266 0.691 61.399 1.00 30.80 O
ATOM 20 N1 G B 41 30.238 -0.719 62.868 1.00 30.21 N
ATOM 21 C2 G B 41 29.395 -0.988 63.921 1.00 30.44 C
ATOM 22 N2 G B 41 29.278 -2.277 64.279 1.00 30.70 N
ATOM 23 N3 G B 41 28.712 -0.060 64.581 1.00 30.37 N
ATOM 24 C4 G B 41 28.945 1.185 64.096 1.00 30.86 C
ATOM 25 P U B 42 29.596 4.699 69.461 1.00 34.24 P
ATOM 26 OP1 U B 42 30.253 5.700 68.590 1.00 33.73 O
ATOM 27 OP2 U B 42 30.332 3.487 69.883 1.00 33.95 O
ATOM 28 O5' U B 42 29.060 5.426 70.781 1.00 36.06 O
TER

Atoms:
C4: (25.047,1.599,71.582)
N3: (24.745,2.069,72.848)
OP1: (30.253,5.700,68.590)
OP2: (30.332,3.487,69.883)
C2: (25.152,3.255,73.411)
C1': (26.448,5.353,73.089)
C3': (28.390,6.707,73.273)
O5': (29.060,5.426,70.781)
O4': (26.443,6.249,71.994)
C5': (28.446,6.709,70.699)
P: (29.596,4.699,69.461)
C4': (27.670,7.022,71.967)
C2': (27.878,5.310,73.616)
O2': (27.884,5.053,75.007)
N1: (25.948,4.038,72.597)
O4: (24.613,0.512,71.209)
O2: (24.827,3.577,74.541)
C6: (26.287,3.632,71.322)
C5: (25.880,2.472,70.795)
O3': (28.033,7.665,74.268)
OP1: (28.373,8.622,66.155)
OP2: (29.661,7.638,64.177)
C3': (28.222,3.962,67.358)
C1': (27.436,2.505,65.664)
C5': (27.014,6.011,66.396)
O6: (31.266,0.691,61.399)
O4': (26.768,3.751,65.539)
C8: (28.903,3.360,63.775)
C2: (29.395,-0.988,63.921)
C6: (30.489,0.552,62.355)
C5: (29.764,1.553,63.051)
C4: (28.945,1.185,64.096)
P: (28.421,7.730,64.977)
C4': (26.953,4.532,66.745)
C2': (28.079,2.473,67.048)
O2': (27.221,1.803,67.953)
N1: (30.238,-0.719,62.868)
N2: (29.278,-2.277,64.279)
N3: (28.712,-0.060,64.581)
N7: (29.730,2.929,62.863)
N9: (28.387,2.357,64.563)
O5': (28.025,6.246,65.419)
O3': (28.242,4.224,68.754)
Image (generated by PyMOL):
PyMOL image
show in jmol