Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A33:A7
Extra
PDB:
ATOM 1 O3' A A 32 -11.950 -18.667 35.332 1.00 30.04 O
ATOM 2 P A A 33 -11.372 -20.153 35.135 1.00 32.32 P
ATOM 3 OP1 A A 33 -12.497 -21.091 35.375 1.00 36.30 O
ATOM 4 OP2 A A 33 -10.156 -20.269 35.977 1.00 26.67 O
ATOM 5 O5' A A 33 -10.971 -20.173 33.597 1.00 28.91 O
ATOM 6 C5' A A 33 -11.943 -19.943 32.588 1.00 28.66 C
ATOM 7 C4' A A 33 -11.316 -19.909 31.220 1.00 28.19 C
ATOM 8 O4' A A 33 -10.498 -18.718 31.083 1.00 29.04 O
ATOM 9 C3' A A 33 -10.362 -21.047 30.899 1.00 30.30 C
ATOM 10 O3' A A 33 -11.026 -22.238 30.513 1.00 27.15 O
ATOM 11 C2' A A 33 -9.490 -20.446 29.806 1.00 28.78 C
ATOM 12 O2' A A 33 -10.176 -20.442 28.563 1.00 30.69 O
ATOM 13 C1' A A 33 -9.364 -19.001 30.290 1.00 28.05 C
ATOM 14 N9 A A 33 -8.157 -18.800 31.115 1.00 28.83 N
ATOM 15 C8 A A 33 -8.045 -18.911 32.479 1.00 27.93 C
ATOM 16 N7 A A 33 -6.839 -18.673 32.931 1.00 25.82 N
ATOM 17 C5 A A 33 -6.105 -18.387 31.787 1.00 27.72 C
ATOM 18 C6 A A 33 -4.756 -18.050 31.586 1.00 24.62 C
ATOM 19 N6 A A 33 -3.863 -17.938 32.569 1.00 21.89 N
ATOM 20 N1 A A 33 -4.347 -17.826 30.319 1.00 27.06 N
ATOM 21 C2 A A 33 -5.237 -17.935 29.326 1.00 26.51 C
ATOM 22 N3 A A 33 -6.529 -18.245 29.390 1.00 29.43 N
ATOM 23 C4 A A 33 -6.905 -18.460 30.662 1.00 28.16 C
ATOM 24 P U A 34 -10.203 -23.609 30.378 1.00 36.17 P
ATOM 25 OP1 U A 34 -11.180 -24.676 30.039 1.00 38.08 O
ATOM 26 OP2 U A 34 -9.388 -23.754 31.606 1.00 29.77 O
ATOM 27 O5' U A 34 -9.260 -23.321 29.132 1.00 30.74 O
TER
ATOM 1 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 2 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 3 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 4 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 5 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
ATOM 6 C5' A B 7 -6.829 -20.796 23.090 1.00 26.81 C
ATOM 7 C4' A B 7 -6.086 -19.879 24.026 1.00 28.01 C
ATOM 8 O4' A B 7 -4.742 -20.382 24.243 1.00 28.11 O
ATOM 9 C3' A B 7 -5.873 -18.459 23.532 1.00 24.40 C
ATOM 10 O3' A B 7 -7.013 -17.638 23.719 1.00 27.56 O
ATOM 11 C2' A B 7 -4.654 -18.007 24.325 1.00 26.90 C
ATOM 12 O2' A B 7 -5.024 -17.617 25.639 1.00 27.72 O
ATOM 13 C1' A B 7 -3.848 -19.305 24.416 1.00 27.95 C
ATOM 14 N9 A B 7 -2.808 -19.389 23.375 1.00 26.93 N
ATOM 15 C8 A B 7 -2.908 -19.981 22.142 1.00 29.06 C
ATOM 16 N7 A B 7 -1.812 -19.897 21.429 1.00 30.80 N
ATOM 17 C5 A B 7 -0.930 -19.210 22.250 1.00 26.04 C
ATOM 18 C6 A B 7 0.400 -18.802 22.068 1.00 28.55 C
ATOM 19 N6 A B 7 1.097 -19.046 20.953 1.00 28.95 N
ATOM 20 N1 A B 7 0.994 -18.129 23.080 1.00 30.08 N
ATOM 21 C2 A B 7 0.287 -17.892 24.194 1.00 29.06 C
ATOM 22 N3 A B 7 -0.970 -18.226 24.478 1.00 27.07 N
ATOM 23 C4 A B 7 -1.528 -18.891 23.453 1.00 25.27 C
ATOM 24 P G B 8 -7.347 -16.469 22.670 1.00 26.97 P
ATOM 25 OP1 G B 8 -8.644 -15.876 23.072 1.00 41.98 O
ATOM 26 OP2 G B 8 -7.220 -17.046 21.317 1.00 24.37 O
ATOM 27 O5' G B 8 -6.175 -15.427 22.925 1.00 25.38 O
TER
ATOM 2 P A A 33 -11.372 -20.153 35.135 1.00 32.32 P
ATOM 3 OP1 A A 33 -12.497 -21.091 35.375 1.00 36.30 O
ATOM 4 OP2 A A 33 -10.156 -20.269 35.977 1.00 26.67 O
ATOM 5 O5' A A 33 -10.971 -20.173 33.597 1.00 28.91 O
ATOM 6 C5' A A 33 -11.943 -19.943 32.588 1.00 28.66 C
ATOM 7 C4' A A 33 -11.316 -19.909 31.220 1.00 28.19 C
ATOM 8 O4' A A 33 -10.498 -18.718 31.083 1.00 29.04 O
ATOM 9 C3' A A 33 -10.362 -21.047 30.899 1.00 30.30 C
ATOM 10 O3' A A 33 -11.026 -22.238 30.513 1.00 27.15 O
ATOM 11 C2' A A 33 -9.490 -20.446 29.806 1.00 28.78 C
ATOM 12 O2' A A 33 -10.176 -20.442 28.563 1.00 30.69 O
ATOM 13 C1' A A 33 -9.364 -19.001 30.290 1.00 28.05 C
ATOM 14 N9 A A 33 -8.157 -18.800 31.115 1.00 28.83 N
ATOM 15 C8 A A 33 -8.045 -18.911 32.479 1.00 27.93 C
ATOM 16 N7 A A 33 -6.839 -18.673 32.931 1.00 25.82 N
ATOM 17 C5 A A 33 -6.105 -18.387 31.787 1.00 27.72 C
ATOM 18 C6 A A 33 -4.756 -18.050 31.586 1.00 24.62 C
ATOM 19 N6 A A 33 -3.863 -17.938 32.569 1.00 21.89 N
ATOM 20 N1 A A 33 -4.347 -17.826 30.319 1.00 27.06 N
ATOM 21 C2 A A 33 -5.237 -17.935 29.326 1.00 26.51 C
ATOM 22 N3 A A 33 -6.529 -18.245 29.390 1.00 29.43 N
ATOM 23 C4 A A 33 -6.905 -18.460 30.662 1.00 28.16 C
ATOM 24 P U A 34 -10.203 -23.609 30.378 1.00 36.17 P
ATOM 25 OP1 U A 34 -11.180 -24.676 30.039 1.00 38.08 O
ATOM 26 OP2 U A 34 -9.388 -23.754 31.606 1.00 29.77 O
ATOM 27 O5' U A 34 -9.260 -23.321 29.132 1.00 30.74 O
TER
ATOM 1 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 2 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 3 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 4 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 5 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
ATOM 6 C5' A B 7 -6.829 -20.796 23.090 1.00 26.81 C
ATOM 7 C4' A B 7 -6.086 -19.879 24.026 1.00 28.01 C
ATOM 8 O4' A B 7 -4.742 -20.382 24.243 1.00 28.11 O
ATOM 9 C3' A B 7 -5.873 -18.459 23.532 1.00 24.40 C
ATOM 10 O3' A B 7 -7.013 -17.638 23.719 1.00 27.56 O
ATOM 11 C2' A B 7 -4.654 -18.007 24.325 1.00 26.90 C
ATOM 12 O2' A B 7 -5.024 -17.617 25.639 1.00 27.72 O
ATOM 13 C1' A B 7 -3.848 -19.305 24.416 1.00 27.95 C
ATOM 14 N9 A B 7 -2.808 -19.389 23.375 1.00 26.93 N
ATOM 15 C8 A B 7 -2.908 -19.981 22.142 1.00 29.06 C
ATOM 16 N7 A B 7 -1.812 -19.897 21.429 1.00 30.80 N
ATOM 17 C5 A B 7 -0.930 -19.210 22.250 1.00 26.04 C
ATOM 18 C6 A B 7 0.400 -18.802 22.068 1.00 28.55 C
ATOM 19 N6 A B 7 1.097 -19.046 20.953 1.00 28.95 N
ATOM 20 N1 A B 7 0.994 -18.129 23.080 1.00 30.08 N
ATOM 21 C2 A B 7 0.287 -17.892 24.194 1.00 29.06 C
ATOM 22 N3 A B 7 -0.970 -18.226 24.478 1.00 27.07 N
ATOM 23 C4 A B 7 -1.528 -18.891 23.453 1.00 25.27 C
ATOM 24 P G B 8 -7.347 -16.469 22.670 1.00 26.97 P
ATOM 25 OP1 G B 8 -8.644 -15.876 23.072 1.00 41.98 O
ATOM 26 OP2 G B 8 -7.220 -17.046 21.317 1.00 24.37 O
ATOM 27 O5' G B 8 -6.175 -15.427 22.925 1.00 25.38 O
TER
Atoms:
OP1: (-12.497,-21.091,35.375)
OP2: (-10.156,-20.269,35.977)
C3': (-10.362,-21.047,30.899)
C1': (-9.364,-19.001,30.290)
C5': (-11.943,-19.943,32.588)
O4': (-10.498,-18.718,31.083)
C8: (-8.045,-18.911,32.479)
O2': (-10.176,-20.442,28.563)
C6: (-4.756,-18.050,31.586)
C5: (-6.105,-18.387,31.787)
C4: (-6.905,-18.460,30.662)
P: (-11.372,-20.153,35.135)
C4': (-11.316,-19.909,31.220)
C2': (-9.490,-20.446,29.806)
C2: (-5.237,-17.935,29.326)
N1: (-4.347,-17.826,30.319)
N3: (-6.529,-18.245,29.390)
N6: (-3.863,-17.938,32.569)
N7: (-6.839,-18.673,32.931)
N9: (-8.157,-18.800,31.115)
O5': (-10.971,-20.173,33.597)
O3': (-11.026,-22.238,30.513)
OP2: (-10.156,-20.269,35.977)
C3': (-10.362,-21.047,30.899)
C1': (-9.364,-19.001,30.290)
C5': (-11.943,-19.943,32.588)
O4': (-10.498,-18.718,31.083)
C8: (-8.045,-18.911,32.479)
O2': (-10.176,-20.442,28.563)
C6: (-4.756,-18.050,31.586)
C5: (-6.105,-18.387,31.787)
C4: (-6.905,-18.460,30.662)
P: (-11.372,-20.153,35.135)
C4': (-11.316,-19.909,31.220)
C2': (-9.490,-20.446,29.806)
C2: (-5.237,-17.935,29.326)
N1: (-4.347,-17.826,30.319)
N3: (-6.529,-18.245,29.390)
N6: (-3.863,-17.938,32.569)
N7: (-6.839,-18.673,32.931)
N9: (-8.157,-18.800,31.115)
O5': (-10.971,-20.173,33.597)
O3': (-11.026,-22.238,30.513)
OP1: (-8.287,-21.294,20.460)
OP2: (-5.973,-21.600,19.429)
C3': (-5.873,-18.459,23.532)
C1': (-3.848,-19.305,24.416)
C5': (-6.829,-20.796,23.090)
O4': (-4.742,-20.382,24.243)
C8: (-2.908,-19.981,22.142)
O2': (-5.024,-17.617,25.639)
C6: (0.400,-18.802,22.068)
C5: (-0.930,-19.210,22.250)
C4: (-1.528,-18.891,23.453)
P: (-6.861,-21.664,20.617)
C4': (-6.086,-19.879,24.026)
C2': (-4.654,-18.007,24.325)
C2: (0.287,-17.892,24.194)
N1: (0.994,-18.129,23.080)
N3: (-0.970,-18.226,24.478)
N6: (1.097,-19.046,20.953)
N7: (-1.812,-19.897,21.429)
N9: (-2.808,-19.389,23.375)
O5': (-6.213,-20.837,21.812)
O3': (-7.013,-17.638,23.719)
OP2: (-5.973,-21.600,19.429)
C3': (-5.873,-18.459,23.532)
C1': (-3.848,-19.305,24.416)
C5': (-6.829,-20.796,23.090)
O4': (-4.742,-20.382,24.243)
C8: (-2.908,-19.981,22.142)
O2': (-5.024,-17.617,25.639)
C6: (0.400,-18.802,22.068)
C5: (-0.930,-19.210,22.250)
C4: (-1.528,-18.891,23.453)
P: (-6.861,-21.664,20.617)
C4': (-6.086,-19.879,24.026)
C2': (-4.654,-18.007,24.325)
C2: (0.287,-17.892,24.194)
N1: (0.994,-18.129,23.080)
N3: (-0.970,-18.226,24.478)
N6: (1.097,-19.046,20.953)
N7: (-1.812,-19.897,21.429)
N9: (-2.808,-19.389,23.375)
O5': (-6.213,-20.837,21.812)
O3': (-7.013,-17.638,23.719)
Image (generated by PyMOL):