Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3G9C:Q57:Q41
Extra
PDB:
ATOM 1 O3' G A 56 -5.485 -43.262 30.449 1.00 49.31 O
ATOM 2 P A A 57 -5.005 -44.790 30.537 1.00 49.39 P
ATOM 3 OP1 A A 57 -4.837 -45.283 29.151 1.00 49.37 O
ATOM 4 OP2 A A 57 -5.914 -45.492 31.473 1.00 49.02 O
ATOM 5 O5' A A 57 -3.565 -44.709 31.236 1.00 49.28 O
ATOM 6 C5' A A 57 -2.397 -44.372 30.488 1.00 49.34 C
ATOM 7 C4' A A 57 -1.201 -44.182 31.406 1.00 49.47 C
ATOM 8 O4' A A 57 -1.465 -43.130 32.374 1.00 48.84 O
ATOM 9 C3' A A 57 -0.850 -45.371 32.287 1.00 49.89 C
ATOM 10 O3' A A 57 -0.140 -46.363 31.560 1.00 51.43 O
ATOM 11 C2' A A 57 -0.004 -44.687 33.354 1.00 49.16 C
ATOM 12 O2' A A 57 1.269 -44.304 32.875 1.00 49.85 O
ATOM 13 C1' A A 57 -0.850 -43.444 33.612 1.00 47.72 C
ATOM 14 N9 A A 57 -1.882 -43.634 34.633 1.00 45.67 N
ATOM 15 C8 A A 57 -3.203 -43.918 34.425 1.00 44.98 C
ATOM 16 N7 A A 57 -3.906 -44.037 35.525 1.00 44.16 N
ATOM 17 C5 A A 57 -2.984 -43.819 36.528 1.00 43.68 C
ATOM 18 C6 A A 57 -3.101 -43.809 37.931 1.00 43.16 C
ATOM 19 N6 A A 57 -4.254 -44.034 38.565 1.00 42.64 N
ATOM 20 N1 A A 57 -1.988 -43.556 38.656 1.00 43.39 N
ATOM 21 C2 A A 57 -0.834 -43.327 38.011 1.00 43.70 C
ATOM 22 N3 A A 57 -0.604 -43.315 36.695 1.00 44.10 N
ATOM 23 C4 A A 57 -1.729 -43.569 36.000 1.00 44.47 C
ATOM 24 P U A 58 -0.751 -47.842 31.425 1.00 52.67 P
ATOM 25 OP1 U A 58 -1.290 -47.958 30.053 1.00 52.83 O
ATOM 26 OP2 U A 58 -1.623 -48.126 32.591 1.00 51.80 O
ATOM 27 O5' U A 58 0.545 -48.774 31.541 1.00 53.18 O
TER
ATOM 1 O3' U B 40 -3.591 -45.431 45.238 1.00 66.87 O
ATOM 2 P A B 41 -3.287 -45.282 43.675 1.00 66.17 P
ATOM 3 OP1 A B 41 -4.115 -44.166 43.158 1.00 66.38 O
ATOM 4 OP2 A B 41 -3.355 -46.612 43.023 1.00 66.13 O
ATOM 5 O5' A B 41 -1.762 -44.799 43.704 1.00 64.09 O
ATOM 6 C5' A B 41 -0.785 -45.542 44.430 1.00 61.01 C
ATOM 7 C4' A B 41 0.347 -45.961 43.510 1.00 58.95 C
ATOM 8 O4' A B 41 -0.196 -46.697 42.382 1.00 58.17 O
ATOM 9 C3' A B 41 1.155 -44.806 42.922 1.00 57.85 C
ATOM 10 O3' A B 41 2.543 -45.062 43.075 1.00 56.85 O
ATOM 11 C2' A B 41 0.738 -44.778 41.453 1.00 57.54 C
ATOM 12 O2' A B 41 1.771 -44.322 40.600 1.00 57.75 O
ATOM 13 C1' A B 41 0.443 -46.254 41.203 1.00 57.05 C
ATOM 14 N9 A B 41 -0.419 -46.501 40.048 1.00 55.50 N
ATOM 15 C8 A B 41 -1.773 -46.689 40.041 1.00 55.02 C
ATOM 16 N7 A B 41 -2.276 -46.888 38.844 1.00 54.50 N
ATOM 17 C5 A B 41 -1.176 -46.824 38.009 1.00 54.27 C
ATOM 18 C6 A B 41 -1.029 -46.955 36.612 1.00 54.14 C
ATOM 19 N6 A B 41 -2.052 -47.185 35.788 1.00 54.08 N
ATOM 20 N1 A B 41 0.214 -46.839 36.090 1.00 54.41 N
ATOM 21 C2 A B 41 1.245 -46.604 36.917 1.00 54.58 C
ATOM 22 N3 A B 41 1.229 -46.466 38.246 1.00 54.63 N
ATOM 23 C4 A B 41 -0.021 -46.586 38.734 1.00 54.75 C
ATOM 24 P U B 42 3.370 -44.343 44.239 1.00 56.44 P
ATOM 25 OP1 U B 42 2.919 -44.885 45.542 1.00 56.35 O
ATOM 26 OP2 U B 42 3.321 -42.882 44.000 1.00 56.30 O
ATOM 27 O5' U B 42 4.853 -44.869 43.955 1.00 55.29 O
TER
ATOM 2 P A A 57 -5.005 -44.790 30.537 1.00 49.39 P
ATOM 3 OP1 A A 57 -4.837 -45.283 29.151 1.00 49.37 O
ATOM 4 OP2 A A 57 -5.914 -45.492 31.473 1.00 49.02 O
ATOM 5 O5' A A 57 -3.565 -44.709 31.236 1.00 49.28 O
ATOM 6 C5' A A 57 -2.397 -44.372 30.488 1.00 49.34 C
ATOM 7 C4' A A 57 -1.201 -44.182 31.406 1.00 49.47 C
ATOM 8 O4' A A 57 -1.465 -43.130 32.374 1.00 48.84 O
ATOM 9 C3' A A 57 -0.850 -45.371 32.287 1.00 49.89 C
ATOM 10 O3' A A 57 -0.140 -46.363 31.560 1.00 51.43 O
ATOM 11 C2' A A 57 -0.004 -44.687 33.354 1.00 49.16 C
ATOM 12 O2' A A 57 1.269 -44.304 32.875 1.00 49.85 O
ATOM 13 C1' A A 57 -0.850 -43.444 33.612 1.00 47.72 C
ATOM 14 N9 A A 57 -1.882 -43.634 34.633 1.00 45.67 N
ATOM 15 C8 A A 57 -3.203 -43.918 34.425 1.00 44.98 C
ATOM 16 N7 A A 57 -3.906 -44.037 35.525 1.00 44.16 N
ATOM 17 C5 A A 57 -2.984 -43.819 36.528 1.00 43.68 C
ATOM 18 C6 A A 57 -3.101 -43.809 37.931 1.00 43.16 C
ATOM 19 N6 A A 57 -4.254 -44.034 38.565 1.00 42.64 N
ATOM 20 N1 A A 57 -1.988 -43.556 38.656 1.00 43.39 N
ATOM 21 C2 A A 57 -0.834 -43.327 38.011 1.00 43.70 C
ATOM 22 N3 A A 57 -0.604 -43.315 36.695 1.00 44.10 N
ATOM 23 C4 A A 57 -1.729 -43.569 36.000 1.00 44.47 C
ATOM 24 P U A 58 -0.751 -47.842 31.425 1.00 52.67 P
ATOM 25 OP1 U A 58 -1.290 -47.958 30.053 1.00 52.83 O
ATOM 26 OP2 U A 58 -1.623 -48.126 32.591 1.00 51.80 O
ATOM 27 O5' U A 58 0.545 -48.774 31.541 1.00 53.18 O
TER
ATOM 1 O3' U B 40 -3.591 -45.431 45.238 1.00 66.87 O
ATOM 2 P A B 41 -3.287 -45.282 43.675 1.00 66.17 P
ATOM 3 OP1 A B 41 -4.115 -44.166 43.158 1.00 66.38 O
ATOM 4 OP2 A B 41 -3.355 -46.612 43.023 1.00 66.13 O
ATOM 5 O5' A B 41 -1.762 -44.799 43.704 1.00 64.09 O
ATOM 6 C5' A B 41 -0.785 -45.542 44.430 1.00 61.01 C
ATOM 7 C4' A B 41 0.347 -45.961 43.510 1.00 58.95 C
ATOM 8 O4' A B 41 -0.196 -46.697 42.382 1.00 58.17 O
ATOM 9 C3' A B 41 1.155 -44.806 42.922 1.00 57.85 C
ATOM 10 O3' A B 41 2.543 -45.062 43.075 1.00 56.85 O
ATOM 11 C2' A B 41 0.738 -44.778 41.453 1.00 57.54 C
ATOM 12 O2' A B 41 1.771 -44.322 40.600 1.00 57.75 O
ATOM 13 C1' A B 41 0.443 -46.254 41.203 1.00 57.05 C
ATOM 14 N9 A B 41 -0.419 -46.501 40.048 1.00 55.50 N
ATOM 15 C8 A B 41 -1.773 -46.689 40.041 1.00 55.02 C
ATOM 16 N7 A B 41 -2.276 -46.888 38.844 1.00 54.50 N
ATOM 17 C5 A B 41 -1.176 -46.824 38.009 1.00 54.27 C
ATOM 18 C6 A B 41 -1.029 -46.955 36.612 1.00 54.14 C
ATOM 19 N6 A B 41 -2.052 -47.185 35.788 1.00 54.08 N
ATOM 20 N1 A B 41 0.214 -46.839 36.090 1.00 54.41 N
ATOM 21 C2 A B 41 1.245 -46.604 36.917 1.00 54.58 C
ATOM 22 N3 A B 41 1.229 -46.466 38.246 1.00 54.63 N
ATOM 23 C4 A B 41 -0.021 -46.586 38.734 1.00 54.75 C
ATOM 24 P U B 42 3.370 -44.343 44.239 1.00 56.44 P
ATOM 25 OP1 U B 42 2.919 -44.885 45.542 1.00 56.35 O
ATOM 26 OP2 U B 42 3.321 -42.882 44.000 1.00 56.30 O
ATOM 27 O5' U B 42 4.853 -44.869 43.955 1.00 55.29 O
TER
Atoms:
OP1: (-4.837,-45.283,29.151)
OP2: (-5.914,-45.492,31.473)
C3': (-0.850,-45.371,32.287)
C1': (-0.850,-43.444,33.612)
C5': (-2.397,-44.372,30.488)
O4': (-1.465,-43.130,32.374)
C8: (-3.203,-43.918,34.425)
O2': (1.269,-44.304,32.875)
C6: (-3.101,-43.809,37.931)
C5: (-2.984,-43.819,36.528)
C4: (-1.729,-43.569,36.000)
P: (-5.005,-44.790,30.537)
C4': (-1.201,-44.182,31.406)
C2': (-0.004,-44.687,33.354)
C2: (-0.834,-43.327,38.011)
N1: (-1.988,-43.556,38.656)
N3: (-0.604,-43.315,36.695)
N6: (-4.254,-44.034,38.565)
N7: (-3.906,-44.037,35.525)
N9: (-1.882,-43.634,34.633)
O5': (-3.565,-44.709,31.236)
O3': (-0.140,-46.363,31.560)
OP2: (-5.914,-45.492,31.473)
C3': (-0.850,-45.371,32.287)
C1': (-0.850,-43.444,33.612)
C5': (-2.397,-44.372,30.488)
O4': (-1.465,-43.130,32.374)
C8: (-3.203,-43.918,34.425)
O2': (1.269,-44.304,32.875)
C6: (-3.101,-43.809,37.931)
C5: (-2.984,-43.819,36.528)
C4: (-1.729,-43.569,36.000)
P: (-5.005,-44.790,30.537)
C4': (-1.201,-44.182,31.406)
C2': (-0.004,-44.687,33.354)
C2: (-0.834,-43.327,38.011)
N1: (-1.988,-43.556,38.656)
N3: (-0.604,-43.315,36.695)
N6: (-4.254,-44.034,38.565)
N7: (-3.906,-44.037,35.525)
N9: (-1.882,-43.634,34.633)
O5': (-3.565,-44.709,31.236)
O3': (-0.140,-46.363,31.560)
OP1: (-4.115,-44.166,43.158)
OP2: (-3.355,-46.612,43.023)
C3': (1.155,-44.806,42.922)
C1': (0.443,-46.254,41.203)
C5': (-0.785,-45.542,44.430)
O4': (-0.196,-46.697,42.382)
C8: (-1.773,-46.689,40.041)
O2': (1.771,-44.322,40.600)
C6: (-1.029,-46.955,36.612)
C5: (-1.176,-46.824,38.009)
C4: (-0.021,-46.586,38.734)
P: (-3.287,-45.282,43.675)
C4': (0.347,-45.961,43.510)
C2': (0.738,-44.778,41.453)
C2: (1.245,-46.604,36.917)
N1: (0.214,-46.839,36.090)
N3: (1.229,-46.466,38.246)
N6: (-2.052,-47.185,35.788)
N7: (-2.276,-46.888,38.844)
N9: (-0.419,-46.501,40.048)
O5': (-1.762,-44.799,43.704)
O3': (2.543,-45.062,43.075)
OP2: (-3.355,-46.612,43.023)
C3': (1.155,-44.806,42.922)
C1': (0.443,-46.254,41.203)
C5': (-0.785,-45.542,44.430)
O4': (-0.196,-46.697,42.382)
C8: (-1.773,-46.689,40.041)
O2': (1.771,-44.322,40.600)
C6: (-1.029,-46.955,36.612)
C5: (-1.176,-46.824,38.009)
C4: (-0.021,-46.586,38.734)
P: (-3.287,-45.282,43.675)
C4': (0.347,-45.961,43.510)
C2': (0.738,-44.778,41.453)
C2: (1.245,-46.604,36.917)
N1: (0.214,-46.839,36.090)
N3: (1.229,-46.466,38.246)
N6: (-2.052,-47.185,35.788)
N7: (-2.276,-46.888,38.844)
N9: (-0.419,-46.501,40.048)
O5': (-1.762,-44.799,43.704)
O3': (2.543,-45.062,43.075)
Image (generated by PyMOL):