Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1509:A1308
Extra
PDB:
ATOM 1 O3' G A1508 32.593 -18.689 -26.511 1.00 47.62 O
ATOM 2 P A A1509 31.309 -18.890 -27.467 1.00 44.51 P
ATOM 3 OP1 A A1509 30.500 -17.650 -27.469 1.00 38.86 O
ATOM 4 OP2 A A1509 30.677 -20.195 -27.091 1.00 47.06 O
ATOM 5 O5' A A1509 31.937 -19.074 -28.920 1.00 39.73 O
ATOM 6 C5' A A1509 31.105 -19.113 -30.063 1.00 39.12 C
ATOM 7 C4' A A1509 31.794 -19.840 -31.182 1.00 44.41 C
ATOM 8 O4' A A1509 32.147 -21.175 -30.749 1.00 47.57 O
ATOM 9 C3' A A1509 30.928 -20.052 -32.416 1.00 46.01 C
ATOM 10 O3' A A1509 30.992 -18.926 -33.268 1.00 53.69 O
ATOM 11 C2' A A1509 31.531 -21.297 -33.052 1.00 42.86 C
ATOM 12 O2' A A1509 32.674 -21.011 -33.820 1.00 37.59 O
ATOM 13 C1' A A1509 31.964 -22.090 -31.819 1.00 44.07 C
ATOM 14 N9 A A1509 30.962 -23.066 -31.414 1.00 40.61 N
ATOM 15 C8 A A1509 30.237 -23.093 -30.245 1.00 48.81 C
ATOM 16 N7 A A1509 29.438 -24.127 -30.144 1.00 45.41 N
ATOM 17 C5 A A1509 29.647 -24.818 -31.317 1.00 43.67 C
ATOM 18 C6 A A1509 29.127 -25.995 -31.794 1.00 45.12 C
ATOM 19 N6 A A1509 28.273 -26.739 -31.102 1.00 44.29 N
ATOM 20 N1 A A1509 29.520 -26.411 -33.012 1.00 48.16 N
ATOM 21 C2 A A1509 30.410 -25.659 -33.690 1.00 50.08 C
ATOM 22 N3 A A1509 30.994 -24.531 -33.335 1.00 40.23 N
ATOM 23 C4 A A1509 30.566 -24.163 -32.120 1.00 38.73 C
ATOM 24 P A A1510 29.681 -18.455 -34.062 1.00 52.60 P
ATOM 25 OP1 A A1510 30.063 -17.245 -34.845 1.00 50.42 O
ATOM 26 OP2 A A1510 28.589 -18.369 -33.057 1.00 43.97 O
ATOM 27 O5' A A1510 29.420 -19.655 -35.094 1.00 38.75 O
TER
ATOM 1 O3' U B1307 30.543 -26.269 -40.368 1.00 51.32 O
ATOM 2 P A B1308 32.087 -26.628 -40.171 1.00 51.98 P
ATOM 3 OP1 A B1308 32.905 -25.442 -40.525 1.00 48.71 O
ATOM 4 OP2 A B1308 32.280 -27.906 -40.887 1.00 36.89 O
ATOM 5 O5' A B1308 32.241 -26.926 -38.614 1.00 39.51 O
ATOM 6 C5' A B1308 32.160 -25.880 -37.638 1.00 47.87 C
ATOM 7 C4' A B1308 32.961 -26.241 -36.391 1.00 55.12 C
ATOM 8 O4' A B1308 32.270 -27.226 -35.571 1.00 52.50 O
ATOM 9 C3' A B1308 34.324 -26.869 -36.633 1.00 50.53 C
ATOM 10 O3' A B1308 35.302 -25.898 -36.946 1.00 44.86 O
ATOM 11 C2' A B1308 34.613 -27.594 -35.327 1.00 49.85 C
ATOM 12 O2' A B1308 35.110 -26.690 -34.356 1.00 50.42 O
ATOM 13 C1' A B1308 33.216 -28.070 -34.925 1.00 46.89 C
ATOM 14 N9 A B1308 32.921 -29.465 -35.278 1.00 46.22 N
ATOM 15 C8 A B1308 32.169 -29.929 -36.332 1.00 46.67 C
ATOM 16 N7 A B1308 32.060 -31.237 -36.372 1.00 48.71 N
ATOM 17 C5 A B1308 32.794 -31.665 -35.275 1.00 48.92 C
ATOM 18 C6 A B1308 33.069 -32.949 -34.764 1.00 49.77 C
ATOM 19 N6 A B1308 32.600 -34.074 -35.306 1.00 54.65 N
ATOM 20 N1 A B1308 33.847 -33.034 -33.662 1.00 48.55 N
ATOM 21 C2 A B1308 34.307 -31.903 -33.117 1.00 52.16 C
ATOM 22 N3 A B1308 34.112 -30.639 -33.498 1.00 53.90 N
ATOM 23 C4 A B1308 33.336 -30.587 -34.596 1.00 52.28 C
ATOM 24 P A B1309 36.207 -26.116 -38.240 1.00 50.68 P
ATOM 25 OP1 A B1309 36.202 -24.882 -39.069 1.00 45.21 O
ATOM 26 OP2 A B1309 35.719 -27.379 -38.821 1.00 55.24 O
ATOM 27 O5' A B1309 37.667 -26.442 -37.674 1.00 53.58 O
TER
ATOM 2 P A A1509 31.309 -18.890 -27.467 1.00 44.51 P
ATOM 3 OP1 A A1509 30.500 -17.650 -27.469 1.00 38.86 O
ATOM 4 OP2 A A1509 30.677 -20.195 -27.091 1.00 47.06 O
ATOM 5 O5' A A1509 31.937 -19.074 -28.920 1.00 39.73 O
ATOM 6 C5' A A1509 31.105 -19.113 -30.063 1.00 39.12 C
ATOM 7 C4' A A1509 31.794 -19.840 -31.182 1.00 44.41 C
ATOM 8 O4' A A1509 32.147 -21.175 -30.749 1.00 47.57 O
ATOM 9 C3' A A1509 30.928 -20.052 -32.416 1.00 46.01 C
ATOM 10 O3' A A1509 30.992 -18.926 -33.268 1.00 53.69 O
ATOM 11 C2' A A1509 31.531 -21.297 -33.052 1.00 42.86 C
ATOM 12 O2' A A1509 32.674 -21.011 -33.820 1.00 37.59 O
ATOM 13 C1' A A1509 31.964 -22.090 -31.819 1.00 44.07 C
ATOM 14 N9 A A1509 30.962 -23.066 -31.414 1.00 40.61 N
ATOM 15 C8 A A1509 30.237 -23.093 -30.245 1.00 48.81 C
ATOM 16 N7 A A1509 29.438 -24.127 -30.144 1.00 45.41 N
ATOM 17 C5 A A1509 29.647 -24.818 -31.317 1.00 43.67 C
ATOM 18 C6 A A1509 29.127 -25.995 -31.794 1.00 45.12 C
ATOM 19 N6 A A1509 28.273 -26.739 -31.102 1.00 44.29 N
ATOM 20 N1 A A1509 29.520 -26.411 -33.012 1.00 48.16 N
ATOM 21 C2 A A1509 30.410 -25.659 -33.690 1.00 50.08 C
ATOM 22 N3 A A1509 30.994 -24.531 -33.335 1.00 40.23 N
ATOM 23 C4 A A1509 30.566 -24.163 -32.120 1.00 38.73 C
ATOM 24 P A A1510 29.681 -18.455 -34.062 1.00 52.60 P
ATOM 25 OP1 A A1510 30.063 -17.245 -34.845 1.00 50.42 O
ATOM 26 OP2 A A1510 28.589 -18.369 -33.057 1.00 43.97 O
ATOM 27 O5' A A1510 29.420 -19.655 -35.094 1.00 38.75 O
TER
ATOM 1 O3' U B1307 30.543 -26.269 -40.368 1.00 51.32 O
ATOM 2 P A B1308 32.087 -26.628 -40.171 1.00 51.98 P
ATOM 3 OP1 A B1308 32.905 -25.442 -40.525 1.00 48.71 O
ATOM 4 OP2 A B1308 32.280 -27.906 -40.887 1.00 36.89 O
ATOM 5 O5' A B1308 32.241 -26.926 -38.614 1.00 39.51 O
ATOM 6 C5' A B1308 32.160 -25.880 -37.638 1.00 47.87 C
ATOM 7 C4' A B1308 32.961 -26.241 -36.391 1.00 55.12 C
ATOM 8 O4' A B1308 32.270 -27.226 -35.571 1.00 52.50 O
ATOM 9 C3' A B1308 34.324 -26.869 -36.633 1.00 50.53 C
ATOM 10 O3' A B1308 35.302 -25.898 -36.946 1.00 44.86 O
ATOM 11 C2' A B1308 34.613 -27.594 -35.327 1.00 49.85 C
ATOM 12 O2' A B1308 35.110 -26.690 -34.356 1.00 50.42 O
ATOM 13 C1' A B1308 33.216 -28.070 -34.925 1.00 46.89 C
ATOM 14 N9 A B1308 32.921 -29.465 -35.278 1.00 46.22 N
ATOM 15 C8 A B1308 32.169 -29.929 -36.332 1.00 46.67 C
ATOM 16 N7 A B1308 32.060 -31.237 -36.372 1.00 48.71 N
ATOM 17 C5 A B1308 32.794 -31.665 -35.275 1.00 48.92 C
ATOM 18 C6 A B1308 33.069 -32.949 -34.764 1.00 49.77 C
ATOM 19 N6 A B1308 32.600 -34.074 -35.306 1.00 54.65 N
ATOM 20 N1 A B1308 33.847 -33.034 -33.662 1.00 48.55 N
ATOM 21 C2 A B1308 34.307 -31.903 -33.117 1.00 52.16 C
ATOM 22 N3 A B1308 34.112 -30.639 -33.498 1.00 53.90 N
ATOM 23 C4 A B1308 33.336 -30.587 -34.596 1.00 52.28 C
ATOM 24 P A B1309 36.207 -26.116 -38.240 1.00 50.68 P
ATOM 25 OP1 A B1309 36.202 -24.882 -39.069 1.00 45.21 O
ATOM 26 OP2 A B1309 35.719 -27.379 -38.821 1.00 55.24 O
ATOM 27 O5' A B1309 37.667 -26.442 -37.674 1.00 53.58 O
TER
Atoms:
OP1: (30.500,-17.650,-27.469)
OP2: (30.677,-20.195,-27.091)
C3': (30.928,-20.052,-32.416)
C1': (31.964,-22.090,-31.819)
C5': (31.105,-19.113,-30.063)
O4': (32.147,-21.175,-30.749)
C8: (30.237,-23.093,-30.245)
O2': (32.674,-21.011,-33.820)
C6: (29.127,-25.995,-31.794)
C5: (29.647,-24.818,-31.317)
C4: (30.566,-24.163,-32.120)
P: (31.309,-18.890,-27.467)
C4': (31.794,-19.840,-31.182)
C2': (31.531,-21.297,-33.052)
C2: (30.410,-25.659,-33.690)
N1: (29.520,-26.411,-33.012)
N3: (30.994,-24.531,-33.335)
N6: (28.273,-26.739,-31.102)
N7: (29.438,-24.127,-30.144)
N9: (30.962,-23.066,-31.414)
O5': (31.937,-19.074,-28.920)
O3': (30.992,-18.926,-33.268)
OP2: (30.677,-20.195,-27.091)
C3': (30.928,-20.052,-32.416)
C1': (31.964,-22.090,-31.819)
C5': (31.105,-19.113,-30.063)
O4': (32.147,-21.175,-30.749)
C8: (30.237,-23.093,-30.245)
O2': (32.674,-21.011,-33.820)
C6: (29.127,-25.995,-31.794)
C5: (29.647,-24.818,-31.317)
C4: (30.566,-24.163,-32.120)
P: (31.309,-18.890,-27.467)
C4': (31.794,-19.840,-31.182)
C2': (31.531,-21.297,-33.052)
C2: (30.410,-25.659,-33.690)
N1: (29.520,-26.411,-33.012)
N3: (30.994,-24.531,-33.335)
N6: (28.273,-26.739,-31.102)
N7: (29.438,-24.127,-30.144)
N9: (30.962,-23.066,-31.414)
O5': (31.937,-19.074,-28.920)
O3': (30.992,-18.926,-33.268)
OP1: (32.905,-25.442,-40.525)
OP2: (32.280,-27.906,-40.887)
C3': (34.324,-26.869,-36.633)
C1': (33.216,-28.070,-34.925)
C5': (32.160,-25.880,-37.638)
O4': (32.270,-27.226,-35.571)
C8: (32.169,-29.929,-36.332)
O2': (35.110,-26.690,-34.356)
C6: (33.069,-32.949,-34.764)
C5: (32.794,-31.665,-35.275)
C4: (33.336,-30.587,-34.596)
P: (32.087,-26.628,-40.171)
C4': (32.961,-26.241,-36.391)
C2': (34.613,-27.594,-35.327)
C2: (34.307,-31.903,-33.117)
N1: (33.847,-33.034,-33.662)
N3: (34.112,-30.639,-33.498)
N6: (32.600,-34.074,-35.306)
N7: (32.060,-31.237,-36.372)
N9: (32.921,-29.465,-35.278)
O5': (32.241,-26.926,-38.614)
O3': (35.302,-25.898,-36.946)
OP2: (32.280,-27.906,-40.887)
C3': (34.324,-26.869,-36.633)
C1': (33.216,-28.070,-34.925)
C5': (32.160,-25.880,-37.638)
O4': (32.270,-27.226,-35.571)
C8: (32.169,-29.929,-36.332)
O2': (35.110,-26.690,-34.356)
C6: (33.069,-32.949,-34.764)
C5: (32.794,-31.665,-35.275)
C4: (33.336,-30.587,-34.596)
P: (32.087,-26.628,-40.171)
C4': (32.961,-26.241,-36.391)
C2': (34.613,-27.594,-35.327)
C2: (34.307,-31.903,-33.117)
N1: (33.847,-33.034,-33.662)
N3: (34.112,-30.639,-33.498)
N6: (32.600,-34.074,-35.306)
N7: (32.060,-31.237,-36.372)
N9: (32.921,-29.465,-35.278)
O5': (32.241,-26.926,-38.614)
O3': (35.302,-25.898,-36.946)
Image (generated by PyMOL):