Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01218:01045
Extra
PDB:
ATOM 1 O3' G A1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 2 P A A1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 3 OP1 A A1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 4 OP2 A A1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 5 O5' A A1218 17.634 102.965 106.248 1.00 43.11 O
ATOM 6 C5' A A1218 17.212 102.366 105.019 1.00 42.30 C
ATOM 7 C4' A A1218 18.386 102.181 104.093 1.00 41.48 C
ATOM 8 O4' A A1218 19.372 101.314 104.705 1.00 41.30 O
ATOM 9 C3' A A1218 18.021 101.489 102.797 1.00 41.55 C
ATOM 10 O3' A A1218 17.553 102.452 101.867 1.00 41.08 O
ATOM 11 C2' A A1218 19.339 100.863 102.380 1.00 41.95 C
ATOM 12 O2' A A1218 20.207 101.824 101.819 1.00 45.70 O
ATOM 13 C1' A A1218 19.902 100.433 103.734 1.00 40.75 C
ATOM 14 N9 A A1218 19.534 99.077 104.127 1.00 39.91 N
ATOM 15 C8 A A1218 18.461 98.699 104.891 1.00 40.46 C
ATOM 16 N7 A A1218 18.404 97.412 105.121 1.00 41.53 N
ATOM 17 C5 A A1218 19.507 96.905 104.453 1.00 40.80 C
ATOM 18 C6 A A1218 20.004 95.601 104.308 1.00 40.72 C
ATOM 19 N6 A A1218 19.441 94.529 104.867 1.00 40.74 N
ATOM 20 N1 A A1218 21.114 95.432 103.561 1.00 41.89 N
ATOM 21 C2 A A1218 21.681 96.510 103.006 1.00 42.52 C
ATOM 22 N3 A A1218 21.312 97.788 103.077 1.00 42.18 N
ATOM 23 C4 A A1218 20.205 97.919 103.825 1.00 40.74 C
ATOM 24 P G A1219 16.262 102.137 100.971 1.00 42.07 P
ATOM 25 OP1 G A1219 15.564 103.430 100.759 1.00 42.28 O
ATOM 26 OP2 G A1219 15.525 100.992 101.588 1.00 40.49 O
ATOM 27 O5' G A1219 16.883 101.666 99.584 1.00 38.71 O
TER
ATOM 1 O3' C B1044 24.798 91.756 105.617 1.00 36.93 O
ATOM 2 P A B1045 24.868 90.892 104.268 1.00 39.23 P
ATOM 3 OP1 A B1045 23.701 89.972 104.252 1.00 39.17 O
ATOM 4 OP2 A B1045 26.236 90.331 104.141 1.00 38.03 O
ATOM 5 O5' A B1045 24.670 91.979 103.125 1.00 37.63 O
ATOM 6 C5' A B1045 23.439 92.701 102.991 1.00 38.46 C
ATOM 7 C4' A B1045 23.591 93.757 101.932 1.00 40.40 C
ATOM 8 O4' A B1045 24.572 94.731 102.374 1.00 42.02 O
ATOM 9 C3' A B1045 24.138 93.234 100.617 1.00 39.85 C
ATOM 10 O3' A B1045 23.085 92.733 99.812 1.00 39.61 O
ATOM 11 C2' A B1045 24.804 94.468 100.026 1.00 41.11 C
ATOM 12 O2' A B1045 23.889 95.358 99.420 1.00 41.85 O
ATOM 13 C1' A B1045 25.382 95.127 101.282 1.00 41.13 C
ATOM 14 N9 A B1045 26.752 94.706 101.567 1.00 40.62 N
ATOM 15 C8 A B1045 27.164 93.697 102.397 1.00 40.87 C
ATOM 16 N7 A B1045 28.462 93.546 102.442 1.00 40.10 N
ATOM 17 C5 A B1045 28.938 94.521 101.583 1.00 39.91 C
ATOM 18 C6 A B1045 30.233 94.885 101.199 1.00 39.20 C
ATOM 19 N6 A B1045 31.332 94.270 101.627 1.00 39.68 N
ATOM 20 N1 A B1045 30.366 95.915 100.344 1.00 40.10 N
ATOM 21 C2 A B1045 29.262 96.522 99.897 1.00 41.73 C
ATOM 22 N3 A B1045 27.989 96.266 100.176 1.00 41.40 N
ATOM 23 C4 A B1045 27.895 95.245 101.040 1.00 40.69 C
ATOM 24 P G B1046 23.193 91.267 99.171 1.00 41.93 P
ATOM 25 OP1 G B1046 21.830 90.702 99.196 1.00 43.16 O
ATOM 26 OP2 G B1046 24.310 90.516 99.795 1.00 41.69 O
ATOM 27 O5' G B1046 23.570 91.538 97.651 1.00 41.75 O
TER
ATOM 2 P A A1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 3 OP1 A A1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 4 OP2 A A1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 5 O5' A A1218 17.634 102.965 106.248 1.00 43.11 O
ATOM 6 C5' A A1218 17.212 102.366 105.019 1.00 42.30 C
ATOM 7 C4' A A1218 18.386 102.181 104.093 1.00 41.48 C
ATOM 8 O4' A A1218 19.372 101.314 104.705 1.00 41.30 O
ATOM 9 C3' A A1218 18.021 101.489 102.797 1.00 41.55 C
ATOM 10 O3' A A1218 17.553 102.452 101.867 1.00 41.08 O
ATOM 11 C2' A A1218 19.339 100.863 102.380 1.00 41.95 C
ATOM 12 O2' A A1218 20.207 101.824 101.819 1.00 45.70 O
ATOM 13 C1' A A1218 19.902 100.433 103.734 1.00 40.75 C
ATOM 14 N9 A A1218 19.534 99.077 104.127 1.00 39.91 N
ATOM 15 C8 A A1218 18.461 98.699 104.891 1.00 40.46 C
ATOM 16 N7 A A1218 18.404 97.412 105.121 1.00 41.53 N
ATOM 17 C5 A A1218 19.507 96.905 104.453 1.00 40.80 C
ATOM 18 C6 A A1218 20.004 95.601 104.308 1.00 40.72 C
ATOM 19 N6 A A1218 19.441 94.529 104.867 1.00 40.74 N
ATOM 20 N1 A A1218 21.114 95.432 103.561 1.00 41.89 N
ATOM 21 C2 A A1218 21.681 96.510 103.006 1.00 42.52 C
ATOM 22 N3 A A1218 21.312 97.788 103.077 1.00 42.18 N
ATOM 23 C4 A A1218 20.205 97.919 103.825 1.00 40.74 C
ATOM 24 P G A1219 16.262 102.137 100.971 1.00 42.07 P
ATOM 25 OP1 G A1219 15.564 103.430 100.759 1.00 42.28 O
ATOM 26 OP2 G A1219 15.525 100.992 101.588 1.00 40.49 O
ATOM 27 O5' G A1219 16.883 101.666 99.584 1.00 38.71 O
TER
ATOM 1 O3' C B1044 24.798 91.756 105.617 1.00 36.93 O
ATOM 2 P A B1045 24.868 90.892 104.268 1.00 39.23 P
ATOM 3 OP1 A B1045 23.701 89.972 104.252 1.00 39.17 O
ATOM 4 OP2 A B1045 26.236 90.331 104.141 1.00 38.03 O
ATOM 5 O5' A B1045 24.670 91.979 103.125 1.00 37.63 O
ATOM 6 C5' A B1045 23.439 92.701 102.991 1.00 38.46 C
ATOM 7 C4' A B1045 23.591 93.757 101.932 1.00 40.40 C
ATOM 8 O4' A B1045 24.572 94.731 102.374 1.00 42.02 O
ATOM 9 C3' A B1045 24.138 93.234 100.617 1.00 39.85 C
ATOM 10 O3' A B1045 23.085 92.733 99.812 1.00 39.61 O
ATOM 11 C2' A B1045 24.804 94.468 100.026 1.00 41.11 C
ATOM 12 O2' A B1045 23.889 95.358 99.420 1.00 41.85 O
ATOM 13 C1' A B1045 25.382 95.127 101.282 1.00 41.13 C
ATOM 14 N9 A B1045 26.752 94.706 101.567 1.00 40.62 N
ATOM 15 C8 A B1045 27.164 93.697 102.397 1.00 40.87 C
ATOM 16 N7 A B1045 28.462 93.546 102.442 1.00 40.10 N
ATOM 17 C5 A B1045 28.938 94.521 101.583 1.00 39.91 C
ATOM 18 C6 A B1045 30.233 94.885 101.199 1.00 39.20 C
ATOM 19 N6 A B1045 31.332 94.270 101.627 1.00 39.68 N
ATOM 20 N1 A B1045 30.366 95.915 100.344 1.00 40.10 N
ATOM 21 C2 A B1045 29.262 96.522 99.897 1.00 41.73 C
ATOM 22 N3 A B1045 27.989 96.266 100.176 1.00 41.40 N
ATOM 23 C4 A B1045 27.895 95.245 101.040 1.00 40.69 C
ATOM 24 P G B1046 23.193 91.267 99.171 1.00 41.93 P
ATOM 25 OP1 G B1046 21.830 90.702 99.196 1.00 43.16 O
ATOM 26 OP2 G B1046 24.310 90.516 99.795 1.00 41.69 O
ATOM 27 O5' G B1046 23.570 91.538 97.651 1.00 41.75 O
TER
Atoms:
OP1: (16.694,105.259,106.534)
OP2: (15.331,103.168,107.134)
C3': (18.021,101.489,102.797)
C1': (19.902,100.433,103.734)
C5': (17.212,102.366,105.019)
O4': (19.372,101.314,104.705)
C8: (18.461,98.699,104.891)
O2': (20.207,101.824,101.819)
C6: (20.004,95.601,104.308)
C5: (19.507,96.905,104.453)
C4: (20.205,97.919,103.825)
P: (16.635,103.878,107.080)
C4': (18.386,102.181,104.093)
C2': (19.339,100.863,102.380)
C2: (21.681,96.510,103.006)
N1: (21.114,95.432,103.561)
N3: (21.312,97.788,103.077)
N6: (19.441,94.529,104.867)
N7: (18.404,97.412,105.121)
N9: (19.534,99.077,104.127)
O5': (17.634,102.965,106.248)
O3': (17.553,102.452,101.867)
OP2: (15.331,103.168,107.134)
C3': (18.021,101.489,102.797)
C1': (19.902,100.433,103.734)
C5': (17.212,102.366,105.019)
O4': (19.372,101.314,104.705)
C8: (18.461,98.699,104.891)
O2': (20.207,101.824,101.819)
C6: (20.004,95.601,104.308)
C5: (19.507,96.905,104.453)
C4: (20.205,97.919,103.825)
P: (16.635,103.878,107.080)
C4': (18.386,102.181,104.093)
C2': (19.339,100.863,102.380)
C2: (21.681,96.510,103.006)
N1: (21.114,95.432,103.561)
N3: (21.312,97.788,103.077)
N6: (19.441,94.529,104.867)
N7: (18.404,97.412,105.121)
N9: (19.534,99.077,104.127)
O5': (17.634,102.965,106.248)
O3': (17.553,102.452,101.867)
OP1: (23.701,89.972,104.252)
OP2: (26.236,90.331,104.141)
C3': (24.138,93.234,100.617)
C1': (25.382,95.127,101.282)
C5': (23.439,92.701,102.991)
O4': (24.572,94.731,102.374)
C8: (27.164,93.697,102.397)
O2': (23.889,95.358,99.420)
C6: (30.233,94.885,101.199)
C5: (28.938,94.521,101.583)
C4: (27.895,95.245,101.040)
P: (24.868,90.892,104.268)
C4': (23.591,93.757,101.932)
C2': (24.804,94.468,100.026)
C2: (29.262,96.522,99.897)
N1: (30.366,95.915,100.344)
N3: (27.989,96.266,100.176)
N6: (31.332,94.270,101.627)
N7: (28.462,93.546,102.442)
N9: (26.752,94.706,101.567)
O5': (24.670,91.979,103.125)
O3': (23.085,92.733,99.812)
OP2: (26.236,90.331,104.141)
C3': (24.138,93.234,100.617)
C1': (25.382,95.127,101.282)
C5': (23.439,92.701,102.991)
O4': (24.572,94.731,102.374)
C8: (27.164,93.697,102.397)
O2': (23.889,95.358,99.420)
C6: (30.233,94.885,101.199)
C5: (28.938,94.521,101.583)
C4: (27.895,95.245,101.040)
P: (24.868,90.892,104.268)
C4': (23.591,93.757,101.932)
C2': (24.804,94.468,100.026)
C2: (29.262,96.522,99.897)
N1: (30.366,95.915,100.344)
N3: (27.989,96.266,100.176)
N6: (31.332,94.270,101.627)
N7: (28.462,93.546,102.442)
N9: (26.752,94.706,101.567)
O5': (24.670,91.979,103.125)
O3': (23.085,92.733,99.812)
Image (generated by PyMOL):