Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12392:11080
Extra
PDB:
ATOM 1 O3' G A2391 38.150 -43.778 43.826 1.00 43.22 O
ATOM 2 P A A2392 36.944 -42.808 44.267 1.00 39.22 P
ATOM 3 OP1 A A2392 36.262 -43.506 45.374 1.00 39.23 O
ATOM 4 OP2 A A2392 36.177 -42.451 43.070 1.00 39.35 O
ATOM 5 O5' A A2392 37.695 -41.507 44.815 1.00 38.83 O
ATOM 6 C5' A A2392 38.475 -41.537 45.994 1.00 38.65 C
ATOM 7 C4' A A2392 39.200 -40.249 46.173 1.00 38.35 C
ATOM 8 O4' A A2392 40.027 -40.001 45.031 1.00 38.44 O
ATOM 9 C3' A A2392 38.334 -39.038 46.260 1.00 38.11 C
ATOM 10 O3' A A2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 11 C2' A A2392 39.242 -37.898 45.772 1.00 37.94 C
ATOM 12 O2' A A2392 40.065 -37.358 46.824 1.00 37.69 O
ATOM 13 C1' A A2392 40.118 -38.627 44.768 1.00 38.21 C
ATOM 14 N9 A A2392 39.678 -38.428 43.397 1.00 38.38 N
ATOM 15 C8 A A2392 38.993 -39.384 42.762 1.00 38.68 C
ATOM 16 N7 A A2392 38.676 -39.075 41.537 1.00 38.82 N
ATOM 17 C5 A A2392 39.237 -37.837 41.350 1.00 38.60 C
ATOM 18 C6 A A2392 39.238 -36.994 40.269 1.00 38.62 C
ATOM 19 N6 A A2392 38.699 -37.262 39.115 1.00 38.89 N
ATOM 20 N1 A A2392 39.838 -35.841 40.344 1.00 38.38 N
ATOM 21 C2 A A2392 40.392 -35.579 41.502 1.00 38.13 C
ATOM 22 N3 A A2392 40.457 -36.291 42.616 1.00 38.08 N
ATOM 23 C4 A A2392 39.843 -37.441 42.480 1.00 38.33 C
ATOM 24 P U A2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 25 OP1 U A2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 26 OP2 U A2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 27 O5' U A2393 36.190 -37.006 47.233 1.00 37.27 O
TER
ATOM 1 O3' A B1079 38.090 -29.203 44.916 1.00 37.41 O
ATOM 2 P A B1080 39.543 -29.471 44.266 1.00 34.26 P
ATOM 3 OP1 A B1080 40.125 -30.655 44.971 1.00 34.31 O
ATOM 4 OP2 A B1080 40.292 -28.179 44.280 1.00 34.07 O
ATOM 5 O5' A B1080 39.177 -29.864 42.774 1.00 34.54 O
ATOM 6 C5' A B1080 38.810 -31.180 42.438 1.00 34.79 C
ATOM 7 C4' A B1080 39.133 -31.458 41.008 1.00 35.05 C
ATOM 8 O4' A B1080 38.375 -30.565 40.171 1.00 35.08 O
ATOM 9 C3' A B1080 40.570 -31.188 40.590 1.00 35.05 C
ATOM 10 O3' A B1080 41.431 -32.244 40.931 1.00 35.14 O
ATOM 11 C2' A B1080 40.425 -31.012 39.097 1.00 35.28 C
ATOM 12 O2' A B1080 40.177 -32.276 38.514 1.00 35.58 O
ATOM 13 C1' A B1080 39.131 -30.232 39.030 1.00 35.21 C
ATOM 14 N9 A B1080 39.319 -28.778 39.015 1.00 35.01 N
ATOM 15 C8 A B1080 39.068 -27.896 40.041 1.00 34.72 C
ATOM 16 N7 A B1080 39.258 -26.637 39.708 1.00 34.62 N
ATOM 17 C5 A B1080 39.644 -26.723 38.392 1.00 34.85 C
ATOM 18 C6 A B1080 39.980 -25.756 37.479 1.00 34.89 C
ATOM 19 N6 A B1080 39.966 -24.500 37.824 1.00 34.69 N
ATOM 20 N1 A B1080 40.325 -26.077 36.228 1.00 35.15 N
ATOM 21 C2 A B1080 40.334 -27.375 35.970 1.00 35.36 C
ATOM 22 N3 A B1080 40.003 -28.418 36.732 1.00 35.36 N
ATOM 23 C4 A B1080 39.671 -28.014 37.948 1.00 35.09 C
ATOM 24 P C B1081 42.816 -31.971 41.650 1.00 37.22 P
ATOM 25 OP1 C B1081 43.173 -33.243 42.339 1.00 37.31 O
ATOM 26 OP2 C B1081 42.650 -30.740 42.443 1.00 36.92 O
ATOM 27 O5' C B1081 43.830 -31.660 40.460 1.00 37.36 O
TER
ATOM 2 P A A2392 36.944 -42.808 44.267 1.00 39.22 P
ATOM 3 OP1 A A2392 36.262 -43.506 45.374 1.00 39.23 O
ATOM 4 OP2 A A2392 36.177 -42.451 43.070 1.00 39.35 O
ATOM 5 O5' A A2392 37.695 -41.507 44.815 1.00 38.83 O
ATOM 6 C5' A A2392 38.475 -41.537 45.994 1.00 38.65 C
ATOM 7 C4' A A2392 39.200 -40.249 46.173 1.00 38.35 C
ATOM 8 O4' A A2392 40.027 -40.001 45.031 1.00 38.44 O
ATOM 9 C3' A A2392 38.334 -39.038 46.260 1.00 38.11 C
ATOM 10 O3' A A2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 11 C2' A A2392 39.242 -37.898 45.772 1.00 37.94 C
ATOM 12 O2' A A2392 40.065 -37.358 46.824 1.00 37.69 O
ATOM 13 C1' A A2392 40.118 -38.627 44.768 1.00 38.21 C
ATOM 14 N9 A A2392 39.678 -38.428 43.397 1.00 38.38 N
ATOM 15 C8 A A2392 38.993 -39.384 42.762 1.00 38.68 C
ATOM 16 N7 A A2392 38.676 -39.075 41.537 1.00 38.82 N
ATOM 17 C5 A A2392 39.237 -37.837 41.350 1.00 38.60 C
ATOM 18 C6 A A2392 39.238 -36.994 40.269 1.00 38.62 C
ATOM 19 N6 A A2392 38.699 -37.262 39.115 1.00 38.89 N
ATOM 20 N1 A A2392 39.838 -35.841 40.344 1.00 38.38 N
ATOM 21 C2 A A2392 40.392 -35.579 41.502 1.00 38.13 C
ATOM 22 N3 A A2392 40.457 -36.291 42.616 1.00 38.08 N
ATOM 23 C4 A A2392 39.843 -37.441 42.480 1.00 38.33 C
ATOM 24 P U A2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 25 OP1 U A2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 26 OP2 U A2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 27 O5' U A2393 36.190 -37.006 47.233 1.00 37.27 O
TER
ATOM 1 O3' A B1079 38.090 -29.203 44.916 1.00 37.41 O
ATOM 2 P A B1080 39.543 -29.471 44.266 1.00 34.26 P
ATOM 3 OP1 A B1080 40.125 -30.655 44.971 1.00 34.31 O
ATOM 4 OP2 A B1080 40.292 -28.179 44.280 1.00 34.07 O
ATOM 5 O5' A B1080 39.177 -29.864 42.774 1.00 34.54 O
ATOM 6 C5' A B1080 38.810 -31.180 42.438 1.00 34.79 C
ATOM 7 C4' A B1080 39.133 -31.458 41.008 1.00 35.05 C
ATOM 8 O4' A B1080 38.375 -30.565 40.171 1.00 35.08 O
ATOM 9 C3' A B1080 40.570 -31.188 40.590 1.00 35.05 C
ATOM 10 O3' A B1080 41.431 -32.244 40.931 1.00 35.14 O
ATOM 11 C2' A B1080 40.425 -31.012 39.097 1.00 35.28 C
ATOM 12 O2' A B1080 40.177 -32.276 38.514 1.00 35.58 O
ATOM 13 C1' A B1080 39.131 -30.232 39.030 1.00 35.21 C
ATOM 14 N9 A B1080 39.319 -28.778 39.015 1.00 35.01 N
ATOM 15 C8 A B1080 39.068 -27.896 40.041 1.00 34.72 C
ATOM 16 N7 A B1080 39.258 -26.637 39.708 1.00 34.62 N
ATOM 17 C5 A B1080 39.644 -26.723 38.392 1.00 34.85 C
ATOM 18 C6 A B1080 39.980 -25.756 37.479 1.00 34.89 C
ATOM 19 N6 A B1080 39.966 -24.500 37.824 1.00 34.69 N
ATOM 20 N1 A B1080 40.325 -26.077 36.228 1.00 35.15 N
ATOM 21 C2 A B1080 40.334 -27.375 35.970 1.00 35.36 C
ATOM 22 N3 A B1080 40.003 -28.418 36.732 1.00 35.36 N
ATOM 23 C4 A B1080 39.671 -28.014 37.948 1.00 35.09 C
ATOM 24 P C B1081 42.816 -31.971 41.650 1.00 37.22 P
ATOM 25 OP1 C B1081 43.173 -33.243 42.339 1.00 37.31 O
ATOM 26 OP2 C B1081 42.650 -30.740 42.443 1.00 36.92 O
ATOM 27 O5' C B1081 43.830 -31.660 40.460 1.00 37.36 O
TER
Atoms:
OP1: (36.262,-43.506,45.374)
OP2: (36.177,-42.451,43.070)
C3': (38.334,-39.038,46.260)
C1': (40.118,-38.627,44.768)
C5': (38.475,-41.537,45.994)
O4': (40.027,-40.001,45.031)
C8: (38.993,-39.384,42.762)
O2': (40.065,-37.358,46.824)
C6: (39.238,-36.994,40.269)
C5: (39.237,-37.837,41.350)
C4: (39.843,-37.441,42.480)
P: (36.944,-42.808,44.267)
C4': (39.200,-40.249,46.173)
C2': (39.242,-37.898,45.772)
C2: (40.392,-35.579,41.502)
N1: (39.838,-35.841,40.344)
N3: (40.457,-36.291,42.616)
N6: (38.699,-37.262,39.115)
N7: (38.676,-39.075,41.537)
N9: (39.678,-38.428,43.397)
O5': (37.695,-41.507,44.815)
O3': (37.818,-38.858,47.547)
OP2: (36.177,-42.451,43.070)
C3': (38.334,-39.038,46.260)
C1': (40.118,-38.627,44.768)
C5': (38.475,-41.537,45.994)
O4': (40.027,-40.001,45.031)
C8: (38.993,-39.384,42.762)
O2': (40.065,-37.358,46.824)
C6: (39.238,-36.994,40.269)
C5: (39.237,-37.837,41.350)
C4: (39.843,-37.441,42.480)
P: (36.944,-42.808,44.267)
C4': (39.200,-40.249,46.173)
C2': (39.242,-37.898,45.772)
C2: (40.392,-35.579,41.502)
N1: (39.838,-35.841,40.344)
N3: (40.457,-36.291,42.616)
N6: (38.699,-37.262,39.115)
N7: (38.676,-39.075,41.537)
N9: (39.678,-38.428,43.397)
O5': (37.695,-41.507,44.815)
O3': (37.818,-38.858,47.547)
OP1: (40.125,-30.655,44.971)
OP2: (40.292,-28.179,44.280)
C3': (40.570,-31.188,40.590)
C1': (39.131,-30.232,39.030)
C5': (38.810,-31.180,42.438)
O4': (38.375,-30.565,40.171)
C8: (39.068,-27.896,40.041)
O2': (40.177,-32.276,38.514)
C6: (39.980,-25.756,37.479)
C5: (39.644,-26.723,38.392)
C4: (39.671,-28.014,37.948)
P: (39.543,-29.471,44.266)
C4': (39.133,-31.458,41.008)
C2': (40.425,-31.012,39.097)
C2: (40.334,-27.375,35.970)
N1: (40.325,-26.077,36.228)
N3: (40.003,-28.418,36.732)
N6: (39.966,-24.500,37.824)
N7: (39.258,-26.637,39.708)
N9: (39.319,-28.778,39.015)
O5': (39.177,-29.864,42.774)
O3': (41.431,-32.244,40.931)
OP2: (40.292,-28.179,44.280)
C3': (40.570,-31.188,40.590)
C1': (39.131,-30.232,39.030)
C5': (38.810,-31.180,42.438)
O4': (38.375,-30.565,40.171)
C8: (39.068,-27.896,40.041)
O2': (40.177,-32.276,38.514)
C6: (39.980,-25.756,37.479)
C5: (39.644,-26.723,38.392)
C4: (39.671,-28.014,37.948)
P: (39.543,-29.471,44.266)
C4': (39.133,-31.458,41.008)
C2': (40.425,-31.012,39.097)
C2: (40.334,-27.375,35.970)
N1: (40.325,-26.077,36.228)
N3: (40.003,-28.418,36.732)
N6: (39.966,-24.500,37.824)
N7: (39.258,-26.637,39.708)
N9: (39.319,-28.778,39.015)
O5': (39.177,-29.864,42.774)
O3': (41.431,-32.244,40.931)
Image (generated by PyMOL):