Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:168:1310
Extra
PDB:
ATOM 1 O3' A A 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 2 P A A 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 3 OP1 A A 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 4 OP2 A A 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 5 O5' A A 68 58.254 -60.615 106.858 1.00 51.61 O
ATOM 6 C5' A A 68 59.314 -61.229 107.587 1.00 52.13 C
ATOM 7 C4' A A 68 58.902 -62.565 108.103 1.00 52.64 C
ATOM 8 O4' A A 68 58.034 -62.352 109.248 1.00 52.77 O
ATOM 9 C3' A A 68 58.096 -63.390 107.096 1.00 52.56 C
ATOM 10 O3' A A 68 58.372 -64.776 107.254 1.00 53.10 O
ATOM 11 C2' A A 68 56.663 -63.116 107.505 1.00 52.40 C
ATOM 12 O2' A A 68 55.753 -64.135 107.173 1.00 52.56 O
ATOM 13 C1' A A 68 56.780 -62.965 109.013 1.00 52.76 C
ATOM 14 N9 A A 68 55.708 -62.145 109.562 1.00 52.52 N
ATOM 15 C8 A A 68 55.318 -60.909 109.153 1.00 51.97 C
ATOM 16 N7 A A 68 54.240 -60.466 109.751 1.00 51.88 N
ATOM 17 C5 A A 68 53.866 -61.486 110.567 1.00 52.38 C
ATOM 18 C6 A A 68 52.780 -61.643 111.447 1.00 52.57 C
ATOM 19 N6 A A 68 51.829 -60.737 111.678 1.00 52.25 N
ATOM 20 N1 A A 68 52.699 -62.806 112.123 1.00 53.13 N
ATOM 21 C2 A A 68 53.647 -63.724 111.891 1.00 53.46 C
ATOM 22 N3 A A 68 54.701 -63.699 111.062 1.00 53.33 N
ATOM 23 C4 A A 68 54.749 -62.535 110.425 1.00 52.78 C
ATOM 24 P C A 69 59.383 -65.520 106.266 1.00 52.67 P
ATOM 25 OP1 C A 69 59.225 -64.920 104.896 1.00 52.10 O
ATOM 26 OP2 C A 69 59.171 -66.967 106.449 1.00 53.20 O
ATOM 27 O5' C A 69 60.788 -65.094 106.854 1.00 52.85 O
TER
ATOM 1 O3' C B 309 52.776 -69.467 117.037 1.00 58.14 O
ATOM 2 P A B 310 53.449 -68.635 118.242 1.00 54.80 P
ATOM 3 OP1 A B 310 54.670 -69.399 118.638 1.00 55.34 O
ATOM 4 OP2 A B 310 52.408 -68.377 119.258 1.00 54.92 O
ATOM 5 O5' A B 310 53.849 -67.266 117.557 1.00 54.14 O
ATOM 6 C5' A B 310 54.671 -67.249 116.417 1.00 53.86 C
ATOM 7 C4' A B 310 54.704 -65.886 115.813 1.00 53.20 C
ATOM 8 O4' A B 310 53.388 -65.530 115.338 1.00 52.79 O
ATOM 9 C3' A B 310 55.050 -64.753 116.759 1.00 53.15 C
ATOM 10 O3' A B 310 56.434 -64.678 117.051 1.00 53.38 O
ATOM 11 C2' A B 310 54.491 -63.539 116.015 1.00 52.45 C
ATOM 12 O2' A B 310 55.339 -63.177 114.933 1.00 52.09 O
ATOM 13 C1' A B 310 53.215 -64.130 115.424 1.00 52.32 C
ATOM 14 N9 A B 310 52.008 -63.857 116.227 1.00 52.36 N
ATOM 15 C8 A B 310 51.316 -64.748 116.988 1.00 52.82 C
ATOM 16 N7 A B 310 50.227 -64.261 117.532 1.00 52.73 N
ATOM 17 C5 A B 310 50.163 -62.978 117.060 1.00 52.15 C
ATOM 18 C6 A B 310 49.226 -61.954 117.259 1.00 51.80 C
ATOM 19 N6 A B 310 48.164 -62.106 118.020 1.00 52.00 N
ATOM 20 N1 A B 310 49.423 -60.760 116.672 1.00 51.25 N
ATOM 21 C2 A B 310 50.525 -60.663 115.926 1.00 51.09 C
ATOM 22 N3 A B 310 51.489 -61.541 115.633 1.00 51.37 N
ATOM 23 C4 A B 310 51.250 -62.709 116.248 1.00 51.91 C
ATOM 24 P U B 311 56.936 -64.040 118.426 1.00 52.11 P
ATOM 25 OP1 U B 311 58.409 -63.970 118.345 1.00 52.25 O
ATOM 26 OP2 U B 311 56.301 -64.785 119.549 1.00 52.66 O
ATOM 27 O5' U B 311 56.350 -62.589 118.357 1.00 51.54 O
TER
ATOM 2 P A A 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 3 OP1 A A 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 4 OP2 A A 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 5 O5' A A 68 58.254 -60.615 106.858 1.00 51.61 O
ATOM 6 C5' A A 68 59.314 -61.229 107.587 1.00 52.13 C
ATOM 7 C4' A A 68 58.902 -62.565 108.103 1.00 52.64 C
ATOM 8 O4' A A 68 58.034 -62.352 109.248 1.00 52.77 O
ATOM 9 C3' A A 68 58.096 -63.390 107.096 1.00 52.56 C
ATOM 10 O3' A A 68 58.372 -64.776 107.254 1.00 53.10 O
ATOM 11 C2' A A 68 56.663 -63.116 107.505 1.00 52.40 C
ATOM 12 O2' A A 68 55.753 -64.135 107.173 1.00 52.56 O
ATOM 13 C1' A A 68 56.780 -62.965 109.013 1.00 52.76 C
ATOM 14 N9 A A 68 55.708 -62.145 109.562 1.00 52.52 N
ATOM 15 C8 A A 68 55.318 -60.909 109.153 1.00 51.97 C
ATOM 16 N7 A A 68 54.240 -60.466 109.751 1.00 51.88 N
ATOM 17 C5 A A 68 53.866 -61.486 110.567 1.00 52.38 C
ATOM 18 C6 A A 68 52.780 -61.643 111.447 1.00 52.57 C
ATOM 19 N6 A A 68 51.829 -60.737 111.678 1.00 52.25 N
ATOM 20 N1 A A 68 52.699 -62.806 112.123 1.00 53.13 N
ATOM 21 C2 A A 68 53.647 -63.724 111.891 1.00 53.46 C
ATOM 22 N3 A A 68 54.701 -63.699 111.062 1.00 53.33 N
ATOM 23 C4 A A 68 54.749 -62.535 110.425 1.00 52.78 C
ATOM 24 P C A 69 59.383 -65.520 106.266 1.00 52.67 P
ATOM 25 OP1 C A 69 59.225 -64.920 104.896 1.00 52.10 O
ATOM 26 OP2 C A 69 59.171 -66.967 106.449 1.00 53.20 O
ATOM 27 O5' C A 69 60.788 -65.094 106.854 1.00 52.85 O
TER
ATOM 1 O3' C B 309 52.776 -69.467 117.037 1.00 58.14 O
ATOM 2 P A B 310 53.449 -68.635 118.242 1.00 54.80 P
ATOM 3 OP1 A B 310 54.670 -69.399 118.638 1.00 55.34 O
ATOM 4 OP2 A B 310 52.408 -68.377 119.258 1.00 54.92 O
ATOM 5 O5' A B 310 53.849 -67.266 117.557 1.00 54.14 O
ATOM 6 C5' A B 310 54.671 -67.249 116.417 1.00 53.86 C
ATOM 7 C4' A B 310 54.704 -65.886 115.813 1.00 53.20 C
ATOM 8 O4' A B 310 53.388 -65.530 115.338 1.00 52.79 O
ATOM 9 C3' A B 310 55.050 -64.753 116.759 1.00 53.15 C
ATOM 10 O3' A B 310 56.434 -64.678 117.051 1.00 53.38 O
ATOM 11 C2' A B 310 54.491 -63.539 116.015 1.00 52.45 C
ATOM 12 O2' A B 310 55.339 -63.177 114.933 1.00 52.09 O
ATOM 13 C1' A B 310 53.215 -64.130 115.424 1.00 52.32 C
ATOM 14 N9 A B 310 52.008 -63.857 116.227 1.00 52.36 N
ATOM 15 C8 A B 310 51.316 -64.748 116.988 1.00 52.82 C
ATOM 16 N7 A B 310 50.227 -64.261 117.532 1.00 52.73 N
ATOM 17 C5 A B 310 50.163 -62.978 117.060 1.00 52.15 C
ATOM 18 C6 A B 310 49.226 -61.954 117.259 1.00 51.80 C
ATOM 19 N6 A B 310 48.164 -62.106 118.020 1.00 52.00 N
ATOM 20 N1 A B 310 49.423 -60.760 116.672 1.00 51.25 N
ATOM 21 C2 A B 310 50.525 -60.663 115.926 1.00 51.09 C
ATOM 22 N3 A B 310 51.489 -61.541 115.633 1.00 51.37 N
ATOM 23 C4 A B 310 51.250 -62.709 116.248 1.00 51.91 C
ATOM 24 P U B 311 56.936 -64.040 118.426 1.00 52.11 P
ATOM 25 OP1 U B 311 58.409 -63.970 118.345 1.00 52.25 O
ATOM 26 OP2 U B 311 56.301 -64.785 119.549 1.00 52.66 O
ATOM 27 O5' U B 311 56.350 -62.589 118.357 1.00 51.54 O
TER
Atoms:
OP1: (59.515,-59.206,105.207)
OP2: (57.155,-58.601,105.873)
C3': (58.096,-63.390,107.096)
C1': (56.780,-62.965,109.013)
C5': (59.314,-61.229,107.587)
O4': (58.034,-62.352,109.248)
C8: (55.318,-60.909,109.153)
O2': (55.753,-64.135,107.173)
C6: (52.780,-61.643,111.447)
C5: (53.866,-61.486,110.567)
C4: (54.749,-62.535,110.425)
P: (58.447,-59.179,106.227)
C4': (58.902,-62.565,108.103)
C2': (56.663,-63.116,107.505)
C2: (53.647,-63.724,111.891)
N1: (52.699,-62.806,112.123)
N3: (54.701,-63.699,111.062)
N6: (51.829,-60.737,111.678)
N7: (54.240,-60.466,109.751)
N9: (55.708,-62.145,109.562)
O5': (58.254,-60.615,106.858)
O3': (58.372,-64.776,107.254)
OP2: (57.155,-58.601,105.873)
C3': (58.096,-63.390,107.096)
C1': (56.780,-62.965,109.013)
C5': (59.314,-61.229,107.587)
O4': (58.034,-62.352,109.248)
C8: (55.318,-60.909,109.153)
O2': (55.753,-64.135,107.173)
C6: (52.780,-61.643,111.447)
C5: (53.866,-61.486,110.567)
C4: (54.749,-62.535,110.425)
P: (58.447,-59.179,106.227)
C4': (58.902,-62.565,108.103)
C2': (56.663,-63.116,107.505)
C2: (53.647,-63.724,111.891)
N1: (52.699,-62.806,112.123)
N3: (54.701,-63.699,111.062)
N6: (51.829,-60.737,111.678)
N7: (54.240,-60.466,109.751)
N9: (55.708,-62.145,109.562)
O5': (58.254,-60.615,106.858)
O3': (58.372,-64.776,107.254)
OP1: (54.670,-69.399,118.638)
OP2: (52.408,-68.377,119.258)
C3': (55.050,-64.753,116.759)
C1': (53.215,-64.130,115.424)
C5': (54.671,-67.249,116.417)
O4': (53.388,-65.530,115.338)
C8: (51.316,-64.748,116.988)
O2': (55.339,-63.177,114.933)
C6: (49.226,-61.954,117.259)
C5: (50.163,-62.978,117.060)
C4: (51.250,-62.709,116.248)
P: (53.449,-68.635,118.242)
C4': (54.704,-65.886,115.813)
C2': (54.491,-63.539,116.015)
C2: (50.525,-60.663,115.926)
N1: (49.423,-60.760,116.672)
N3: (51.489,-61.541,115.633)
N6: (48.164,-62.106,118.020)
N7: (50.227,-64.261,117.532)
N9: (52.008,-63.857,116.227)
O5': (53.849,-67.266,117.557)
O3': (56.434,-64.678,117.051)
OP2: (52.408,-68.377,119.258)
C3': (55.050,-64.753,116.759)
C1': (53.215,-64.130,115.424)
C5': (54.671,-67.249,116.417)
O4': (53.388,-65.530,115.338)
C8: (51.316,-64.748,116.988)
O2': (55.339,-63.177,114.933)
C6: (49.226,-61.954,117.259)
C5: (50.163,-62.978,117.060)
C4: (51.250,-62.709,116.248)
P: (53.449,-68.635,118.242)
C4': (54.704,-65.886,115.813)
C2': (54.491,-63.539,116.015)
C2: (50.525,-60.663,115.926)
N1: (49.423,-60.760,116.672)
N3: (51.489,-61.541,115.633)
N6: (48.164,-62.106,118.020)
N7: (50.227,-64.261,117.532)
N9: (52.008,-63.857,116.227)
O5': (53.849,-67.266,117.557)
O3': (56.434,-64.678,117.051)
Image (generated by PyMOL):