Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1487:A1572
Extra
PDB:
ATOM 1 O3' C A1486 -24.722 -3.295 54.727 1.00 39.59 O
ATOM 2 P A A1487 -23.773 -2.143 55.291 1.00 46.01 P
ATOM 3 OP1 A A1487 -24.410 -1.631 56.531 1.00 46.01 O
ATOM 4 OP2 A A1487 -23.496 -1.187 54.162 1.00 46.01 O
ATOM 5 O5' A A1487 -22.459 -2.953 55.650 1.00 46.01 O
ATOM 6 C5' A A1487 -22.487 -3.986 56.615 1.00 46.01 C
ATOM 7 C4' A A1487 -21.173 -4.071 57.316 1.00 46.01 C
ATOM 8 O4' A A1487 -20.865 -5.456 57.617 1.00 46.01 O
ATOM 9 C3' A A1487 -19.984 -3.587 56.507 1.00 46.01 C
ATOM 10 O3' A A1487 -19.861 -2.164 56.518 1.00 46.01 O
ATOM 11 C2' A A1487 -18.840 -4.362 57.135 1.00 46.01 C
ATOM 12 O2' A A1487 -18.511 -3.844 58.412 1.00 46.01 O
ATOM 13 C1' A A1487 -19.516 -5.714 57.340 1.00 46.01 C
ATOM 14 N9 A A1487 -19.472 -6.539 56.127 1.00 45.48 N
ATOM 15 C8 A A1487 -20.555 -6.984 55.411 1.00 45.48 C
ATOM 16 N7 A A1487 -20.219 -7.703 54.373 1.00 45.48 N
ATOM 17 C5 A A1487 -18.832 -7.726 54.419 1.00 45.48 C
ATOM 18 C6 A A1487 -17.864 -8.312 53.602 1.00 45.48 C
ATOM 19 N6 A A1487 -18.122 -9.034 52.514 1.00 45.48 N
ATOM 20 N1 A A1487 -16.581 -8.129 53.949 1.00 45.48 N
ATOM 21 C2 A A1487 -16.279 -7.409 55.028 1.00 45.48 C
ATOM 22 N3 A A1487 -17.091 -6.802 55.869 1.00 45.48 N
ATOM 23 C4 A A1487 -18.360 -7.010 55.498 1.00 45.48 C
ATOM 24 P A A1488 -18.432 -1.414 56.574 1.00 29.25 P
ATOM 25 OP1 A A1488 -18.392 -0.671 57.861 1.00 29.25 O
ATOM 26 OP2 A A1488 -18.271 -0.645 55.294 1.00 29.25 O
ATOM 27 O5' A A1488 -17.388 -2.604 56.612 1.00 29.25 O
TER
ATOM 1 O3' U B1571 -9.703 -5.928 55.017 1.00 9.68 O
ATOM 2 P A B1572 -9.568 -6.692 56.433 1.00 27.66 P
ATOM 3 OP1 A B1572 -9.365 -5.651 57.467 1.00 27.66 O
ATOM 4 OP2 A B1572 -8.526 -7.738 56.261 1.00 27.66 O
ATOM 5 O5' A B1572 -11.002 -7.367 56.622 1.00 27.66 O
ATOM 6 C5' A B1572 -12.179 -6.567 56.723 1.00 27.66 C
ATOM 7 C4' A B1572 -13.256 -7.261 57.527 1.00 27.66 C
ATOM 8 O4' A B1572 -13.985 -8.183 56.673 1.00 27.66 O
ATOM 9 C3' A B1572 -12.768 -8.128 58.690 1.00 27.66 C
ATOM 10 O3' A B1572 -12.540 -7.391 59.884 1.00 27.66 O
ATOM 11 C2' A B1572 -13.864 -9.185 58.819 1.00 27.66 C
ATOM 12 O2' A B1572 -14.999 -8.668 59.515 1.00 27.66 O
ATOM 13 C1' A B1572 -14.238 -9.398 57.359 1.00 27.66 C
ATOM 14 N9 A B1572 -13.433 -10.462 56.725 1.00 26.92 N
ATOM 15 C8 A B1572 -12.383 -10.290 55.844 1.00 26.92 C
ATOM 16 N7 A B1572 -11.858 -11.406 55.395 1.00 26.92 N
ATOM 17 C5 A B1572 -12.616 -12.389 56.023 1.00 26.92 C
ATOM 18 C6 A B1572 -12.551 -13.794 55.965 1.00 26.92 C
ATOM 19 N6 A B1572 -11.681 -14.489 55.237 1.00 26.92 N
ATOM 20 N1 A B1572 -13.446 -14.466 56.700 1.00 26.92 N
ATOM 21 C2 A B1572 -14.330 -13.762 57.438 1.00 26.92 C
ATOM 22 N3 A B1572 -14.498 -12.446 57.587 1.00 26.92 N
ATOM 23 C4 A B1572 -13.594 -11.814 56.836 1.00 26.92 C
ATOM 24 P A B1573 -11.823 -8.099 61.136 1.00 42.17 P
ATOM 25 OP1 A B1573 -11.987 -7.183 62.289 1.00 42.17 O
ATOM 26 OP2 A B1573 -10.441 -8.487 60.699 1.00 42.17 O
ATOM 27 O5' A B1573 -12.704 -9.401 61.359 1.00 42.17 O
TER
ATOM 2 P A A1487 -23.773 -2.143 55.291 1.00 46.01 P
ATOM 3 OP1 A A1487 -24.410 -1.631 56.531 1.00 46.01 O
ATOM 4 OP2 A A1487 -23.496 -1.187 54.162 1.00 46.01 O
ATOM 5 O5' A A1487 -22.459 -2.953 55.650 1.00 46.01 O
ATOM 6 C5' A A1487 -22.487 -3.986 56.615 1.00 46.01 C
ATOM 7 C4' A A1487 -21.173 -4.071 57.316 1.00 46.01 C
ATOM 8 O4' A A1487 -20.865 -5.456 57.617 1.00 46.01 O
ATOM 9 C3' A A1487 -19.984 -3.587 56.507 1.00 46.01 C
ATOM 10 O3' A A1487 -19.861 -2.164 56.518 1.00 46.01 O
ATOM 11 C2' A A1487 -18.840 -4.362 57.135 1.00 46.01 C
ATOM 12 O2' A A1487 -18.511 -3.844 58.412 1.00 46.01 O
ATOM 13 C1' A A1487 -19.516 -5.714 57.340 1.00 46.01 C
ATOM 14 N9 A A1487 -19.472 -6.539 56.127 1.00 45.48 N
ATOM 15 C8 A A1487 -20.555 -6.984 55.411 1.00 45.48 C
ATOM 16 N7 A A1487 -20.219 -7.703 54.373 1.00 45.48 N
ATOM 17 C5 A A1487 -18.832 -7.726 54.419 1.00 45.48 C
ATOM 18 C6 A A1487 -17.864 -8.312 53.602 1.00 45.48 C
ATOM 19 N6 A A1487 -18.122 -9.034 52.514 1.00 45.48 N
ATOM 20 N1 A A1487 -16.581 -8.129 53.949 1.00 45.48 N
ATOM 21 C2 A A1487 -16.279 -7.409 55.028 1.00 45.48 C
ATOM 22 N3 A A1487 -17.091 -6.802 55.869 1.00 45.48 N
ATOM 23 C4 A A1487 -18.360 -7.010 55.498 1.00 45.48 C
ATOM 24 P A A1488 -18.432 -1.414 56.574 1.00 29.25 P
ATOM 25 OP1 A A1488 -18.392 -0.671 57.861 1.00 29.25 O
ATOM 26 OP2 A A1488 -18.271 -0.645 55.294 1.00 29.25 O
ATOM 27 O5' A A1488 -17.388 -2.604 56.612 1.00 29.25 O
TER
ATOM 1 O3' U B1571 -9.703 -5.928 55.017 1.00 9.68 O
ATOM 2 P A B1572 -9.568 -6.692 56.433 1.00 27.66 P
ATOM 3 OP1 A B1572 -9.365 -5.651 57.467 1.00 27.66 O
ATOM 4 OP2 A B1572 -8.526 -7.738 56.261 1.00 27.66 O
ATOM 5 O5' A B1572 -11.002 -7.367 56.622 1.00 27.66 O
ATOM 6 C5' A B1572 -12.179 -6.567 56.723 1.00 27.66 C
ATOM 7 C4' A B1572 -13.256 -7.261 57.527 1.00 27.66 C
ATOM 8 O4' A B1572 -13.985 -8.183 56.673 1.00 27.66 O
ATOM 9 C3' A B1572 -12.768 -8.128 58.690 1.00 27.66 C
ATOM 10 O3' A B1572 -12.540 -7.391 59.884 1.00 27.66 O
ATOM 11 C2' A B1572 -13.864 -9.185 58.819 1.00 27.66 C
ATOM 12 O2' A B1572 -14.999 -8.668 59.515 1.00 27.66 O
ATOM 13 C1' A B1572 -14.238 -9.398 57.359 1.00 27.66 C
ATOM 14 N9 A B1572 -13.433 -10.462 56.725 1.00 26.92 N
ATOM 15 C8 A B1572 -12.383 -10.290 55.844 1.00 26.92 C
ATOM 16 N7 A B1572 -11.858 -11.406 55.395 1.00 26.92 N
ATOM 17 C5 A B1572 -12.616 -12.389 56.023 1.00 26.92 C
ATOM 18 C6 A B1572 -12.551 -13.794 55.965 1.00 26.92 C
ATOM 19 N6 A B1572 -11.681 -14.489 55.237 1.00 26.92 N
ATOM 20 N1 A B1572 -13.446 -14.466 56.700 1.00 26.92 N
ATOM 21 C2 A B1572 -14.330 -13.762 57.438 1.00 26.92 C
ATOM 22 N3 A B1572 -14.498 -12.446 57.587 1.00 26.92 N
ATOM 23 C4 A B1572 -13.594 -11.814 56.836 1.00 26.92 C
ATOM 24 P A B1573 -11.823 -8.099 61.136 1.00 42.17 P
ATOM 25 OP1 A B1573 -11.987 -7.183 62.289 1.00 42.17 O
ATOM 26 OP2 A B1573 -10.441 -8.487 60.699 1.00 42.17 O
ATOM 27 O5' A B1573 -12.704 -9.401 61.359 1.00 42.17 O
TER
Atoms:
OP1: (-24.410,-1.631,56.531)
OP2: (-23.496,-1.187,54.162)
C3': (-19.984,-3.587,56.507)
C1': (-19.516,-5.714,57.340)
C5': (-22.487,-3.986,56.615)
O4': (-20.865,-5.456,57.617)
C8: (-20.555,-6.984,55.411)
O2': (-18.511,-3.844,58.412)
C6: (-17.864,-8.312,53.602)
C5: (-18.832,-7.726,54.419)
C4: (-18.360,-7.010,55.498)
P: (-23.773,-2.143,55.291)
C4': (-21.173,-4.071,57.316)
C2': (-18.840,-4.362,57.135)
C2: (-16.279,-7.409,55.028)
N1: (-16.581,-8.129,53.949)
N3: (-17.091,-6.802,55.869)
N6: (-18.122,-9.034,52.514)
N7: (-20.219,-7.703,54.373)
N9: (-19.472,-6.539,56.127)
O5': (-22.459,-2.953,55.650)
O3': (-19.861,-2.164,56.518)
OP2: (-23.496,-1.187,54.162)
C3': (-19.984,-3.587,56.507)
C1': (-19.516,-5.714,57.340)
C5': (-22.487,-3.986,56.615)
O4': (-20.865,-5.456,57.617)
C8: (-20.555,-6.984,55.411)
O2': (-18.511,-3.844,58.412)
C6: (-17.864,-8.312,53.602)
C5: (-18.832,-7.726,54.419)
C4: (-18.360,-7.010,55.498)
P: (-23.773,-2.143,55.291)
C4': (-21.173,-4.071,57.316)
C2': (-18.840,-4.362,57.135)
C2: (-16.279,-7.409,55.028)
N1: (-16.581,-8.129,53.949)
N3: (-17.091,-6.802,55.869)
N6: (-18.122,-9.034,52.514)
N7: (-20.219,-7.703,54.373)
N9: (-19.472,-6.539,56.127)
O5': (-22.459,-2.953,55.650)
O3': (-19.861,-2.164,56.518)
OP1: (-9.365,-5.651,57.467)
OP2: (-8.526,-7.738,56.261)
C3': (-12.768,-8.128,58.690)
C1': (-14.238,-9.398,57.359)
C5': (-12.179,-6.567,56.723)
O4': (-13.985,-8.183,56.673)
C8: (-12.383,-10.290,55.844)
O2': (-14.999,-8.668,59.515)
C6: (-12.551,-13.794,55.965)
C5: (-12.616,-12.389,56.023)
C4: (-13.594,-11.814,56.836)
P: (-9.568,-6.692,56.433)
C4': (-13.256,-7.261,57.527)
C2': (-13.864,-9.185,58.819)
C2: (-14.330,-13.762,57.438)
N1: (-13.446,-14.466,56.700)
N3: (-14.498,-12.446,57.587)
N6: (-11.681,-14.489,55.237)
N7: (-11.858,-11.406,55.395)
N9: (-13.433,-10.462,56.725)
O5': (-11.002,-7.367,56.622)
O3': (-12.540,-7.391,59.884)
OP2: (-8.526,-7.738,56.261)
C3': (-12.768,-8.128,58.690)
C1': (-14.238,-9.398,57.359)
C5': (-12.179,-6.567,56.723)
O4': (-13.985,-8.183,56.673)
C8: (-12.383,-10.290,55.844)
O2': (-14.999,-8.668,59.515)
C6: (-12.551,-13.794,55.965)
C5: (-12.616,-12.389,56.023)
C4: (-13.594,-11.814,56.836)
P: (-9.568,-6.692,56.433)
C4': (-13.256,-7.261,57.527)
C2': (-13.864,-9.185,58.819)
C2: (-14.330,-13.762,57.438)
N1: (-13.446,-14.466,56.700)
N3: (-14.498,-12.446,57.587)
N6: (-11.681,-14.489,55.237)
N7: (-11.858,-11.406,55.395)
N9: (-13.433,-10.462,56.725)
O5': (-11.002,-7.367,56.622)
O3': (-12.540,-7.391,59.884)
Image (generated by PyMOL):