Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01247:01245
Extra
PDB:
ATOM 1 O3' A A1246 16.491 85.826 91.249 1.00 51.46 O
ATOM 2 P U A1247 17.183 86.220 89.857 1.00 50.93 P
ATOM 3 OP1 U A1247 18.206 87.246 90.139 1.00 51.80 O
ATOM 4 OP2 U A1247 16.114 86.517 88.881 1.00 51.41 O
ATOM 5 O5' U A1247 17.920 84.881 89.416 1.00 51.69 O
ATOM 6 C5' U A1247 19.134 84.465 90.060 1.00 51.12 C
ATOM 7 C4' U A1247 19.568 83.116 89.541 1.00 52.19 C
ATOM 8 O4' U A1247 18.565 82.127 89.885 1.00 52.35 O
ATOM 9 C3' U A1247 19.696 82.976 88.035 1.00 51.95 C
ATOM 10 O3' U A1247 20.913 83.503 87.533 1.00 54.85 O
ATOM 11 C2' U A1247 19.593 81.468 87.853 1.00 52.02 C
ATOM 12 O2' U A1247 20.775 80.769 88.185 1.00 52.20 O
ATOM 13 C1' U A1247 18.513 81.125 88.879 1.00 50.78 C
ATOM 14 N1 U A1247 17.165 81.130 88.292 1.00 49.81 N
ATOM 15 C2 U A1247 16.818 80.084 87.452 1.00 48.14 C
ATOM 16 O2 U A1247 17.571 79.165 87.189 1.00 45.97 O
ATOM 17 N3 U A1247 15.552 80.157 86.932 1.00 48.18 N
ATOM 18 C4 U A1247 14.614 81.144 87.164 1.00 49.05 C
ATOM 19 O4 U A1247 13.504 81.062 86.637 1.00 49.97 O
ATOM 20 C5 U A1247 15.047 82.186 88.041 1.00 49.47 C
ATOM 21 C6 U A1247 16.274 82.146 88.563 1.00 48.93 C
ATOM 22 P C A1248 20.881 84.567 86.326 1.00 57.42 P
ATOM 23 OP1 C A1248 19.728 84.257 85.448 1.00 57.53 O
ATOM 24 OP2 C A1248 22.242 84.605 85.746 1.00 58.17 O
ATOM 25 O5' C A1248 20.634 85.966 87.053 1.00 57.57 O
TER
ATOM 1 O3' U B1244 8.572 83.405 84.492 1.00 50.80 O
ATOM 2 P A B1245 9.051 84.231 85.777 1.00 50.49 P
ATOM 3 OP1 A B1245 9.018 83.293 86.925 1.00 47.35 O
ATOM 4 OP2 A B1245 8.294 85.507 85.849 1.00 47.60 O
ATOM 5 O5' A B1245 10.564 84.576 85.435 1.00 50.25 O
ATOM 6 C5' A B1245 11.606 83.606 85.624 1.00 51.52 C
ATOM 7 C4' A B1245 12.951 84.279 85.561 1.00 51.99 C
ATOM 8 O4' A B1245 13.189 84.750 84.211 1.00 53.15 O
ATOM 9 C3' A B1245 13.087 85.539 86.394 1.00 52.32 C
ATOM 10 O3' A B1245 13.316 85.257 87.762 1.00 53.19 O
ATOM 11 C2' A B1245 14.272 86.217 85.730 1.00 53.59 C
ATOM 12 O2' A B1245 15.510 85.631 86.090 1.00 54.03 O
ATOM 13 C1' A B1245 13.985 85.921 84.256 1.00 54.14 C
ATOM 14 N9 A B1245 13.270 87.013 83.591 1.00 55.60 N
ATOM 15 C8 A B1245 11.939 87.353 83.660 1.00 56.20 C
ATOM 16 N7 A B1245 11.631 88.428 82.973 1.00 55.39 N
ATOM 17 C5 A B1245 12.836 88.816 82.404 1.00 55.61 C
ATOM 18 C6 A B1245 13.188 89.887 81.567 1.00 55.51 C
ATOM 19 N6 A B1245 12.326 90.805 81.125 1.00 54.22 N
ATOM 20 N1 A B1245 14.477 89.983 81.188 1.00 55.85 N
ATOM 21 C2 A B1245 15.345 89.060 81.619 1.00 54.82 C
ATOM 22 N3 A B1245 15.139 88.011 82.398 1.00 53.23 N
ATOM 23 C4 A B1245 13.850 87.946 82.766 1.00 55.50 C
ATOM 24 P A B1246 12.124 85.446 88.817 1.00 52.96 P
ATOM 25 OP1 A B1246 11.112 84.410 88.499 1.00 54.63 O
ATOM 26 OP2 A B1246 11.721 86.872 88.873 1.00 51.24 O
ATOM 27 O5' A B1246 12.764 85.007 90.201 1.00 53.79 O
TER
ATOM 2 P U A1247 17.183 86.220 89.857 1.00 50.93 P
ATOM 3 OP1 U A1247 18.206 87.246 90.139 1.00 51.80 O
ATOM 4 OP2 U A1247 16.114 86.517 88.881 1.00 51.41 O
ATOM 5 O5' U A1247 17.920 84.881 89.416 1.00 51.69 O
ATOM 6 C5' U A1247 19.134 84.465 90.060 1.00 51.12 C
ATOM 7 C4' U A1247 19.568 83.116 89.541 1.00 52.19 C
ATOM 8 O4' U A1247 18.565 82.127 89.885 1.00 52.35 O
ATOM 9 C3' U A1247 19.696 82.976 88.035 1.00 51.95 C
ATOM 10 O3' U A1247 20.913 83.503 87.533 1.00 54.85 O
ATOM 11 C2' U A1247 19.593 81.468 87.853 1.00 52.02 C
ATOM 12 O2' U A1247 20.775 80.769 88.185 1.00 52.20 O
ATOM 13 C1' U A1247 18.513 81.125 88.879 1.00 50.78 C
ATOM 14 N1 U A1247 17.165 81.130 88.292 1.00 49.81 N
ATOM 15 C2 U A1247 16.818 80.084 87.452 1.00 48.14 C
ATOM 16 O2 U A1247 17.571 79.165 87.189 1.00 45.97 O
ATOM 17 N3 U A1247 15.552 80.157 86.932 1.00 48.18 N
ATOM 18 C4 U A1247 14.614 81.144 87.164 1.00 49.05 C
ATOM 19 O4 U A1247 13.504 81.062 86.637 1.00 49.97 O
ATOM 20 C5 U A1247 15.047 82.186 88.041 1.00 49.47 C
ATOM 21 C6 U A1247 16.274 82.146 88.563 1.00 48.93 C
ATOM 22 P C A1248 20.881 84.567 86.326 1.00 57.42 P
ATOM 23 OP1 C A1248 19.728 84.257 85.448 1.00 57.53 O
ATOM 24 OP2 C A1248 22.242 84.605 85.746 1.00 58.17 O
ATOM 25 O5' C A1248 20.634 85.966 87.053 1.00 57.57 O
TER
ATOM 1 O3' U B1244 8.572 83.405 84.492 1.00 50.80 O
ATOM 2 P A B1245 9.051 84.231 85.777 1.00 50.49 P
ATOM 3 OP1 A B1245 9.018 83.293 86.925 1.00 47.35 O
ATOM 4 OP2 A B1245 8.294 85.507 85.849 1.00 47.60 O
ATOM 5 O5' A B1245 10.564 84.576 85.435 1.00 50.25 O
ATOM 6 C5' A B1245 11.606 83.606 85.624 1.00 51.52 C
ATOM 7 C4' A B1245 12.951 84.279 85.561 1.00 51.99 C
ATOM 8 O4' A B1245 13.189 84.750 84.211 1.00 53.15 O
ATOM 9 C3' A B1245 13.087 85.539 86.394 1.00 52.32 C
ATOM 10 O3' A B1245 13.316 85.257 87.762 1.00 53.19 O
ATOM 11 C2' A B1245 14.272 86.217 85.730 1.00 53.59 C
ATOM 12 O2' A B1245 15.510 85.631 86.090 1.00 54.03 O
ATOM 13 C1' A B1245 13.985 85.921 84.256 1.00 54.14 C
ATOM 14 N9 A B1245 13.270 87.013 83.591 1.00 55.60 N
ATOM 15 C8 A B1245 11.939 87.353 83.660 1.00 56.20 C
ATOM 16 N7 A B1245 11.631 88.428 82.973 1.00 55.39 N
ATOM 17 C5 A B1245 12.836 88.816 82.404 1.00 55.61 C
ATOM 18 C6 A B1245 13.188 89.887 81.567 1.00 55.51 C
ATOM 19 N6 A B1245 12.326 90.805 81.125 1.00 54.22 N
ATOM 20 N1 A B1245 14.477 89.983 81.188 1.00 55.85 N
ATOM 21 C2 A B1245 15.345 89.060 81.619 1.00 54.82 C
ATOM 22 N3 A B1245 15.139 88.011 82.398 1.00 53.23 N
ATOM 23 C4 A B1245 13.850 87.946 82.766 1.00 55.50 C
ATOM 24 P A B1246 12.124 85.446 88.817 1.00 52.96 P
ATOM 25 OP1 A B1246 11.112 84.410 88.499 1.00 54.63 O
ATOM 26 OP2 A B1246 11.721 86.872 88.873 1.00 51.24 O
ATOM 27 O5' A B1246 12.764 85.007 90.201 1.00 53.79 O
TER
Atoms:
C4: (14.614,81.144,87.164)
N3: (15.552,80.157,86.932)
OP1: (18.206,87.246,90.139)
OP2: (16.114,86.517,88.881)
C2: (16.818,80.084,87.452)
C1': (18.513,81.125,88.879)
C3': (19.696,82.976,88.035)
O5': (17.920,84.881,89.416)
O4': (18.565,82.127,89.885)
C5': (19.134,84.465,90.060)
P: (17.183,86.220,89.857)
C4': (19.568,83.116,89.541)
C2': (19.593,81.468,87.853)
O2': (20.775,80.769,88.185)
N1: (17.165,81.130,88.292)
O4: (13.504,81.062,86.637)
O2: (17.571,79.165,87.189)
C6: (16.274,82.146,88.563)
C5: (15.047,82.186,88.041)
O3': (20.913,83.503,87.533)
N3: (15.552,80.157,86.932)
OP1: (18.206,87.246,90.139)
OP2: (16.114,86.517,88.881)
C2: (16.818,80.084,87.452)
C1': (18.513,81.125,88.879)
C3': (19.696,82.976,88.035)
O5': (17.920,84.881,89.416)
O4': (18.565,82.127,89.885)
C5': (19.134,84.465,90.060)
P: (17.183,86.220,89.857)
C4': (19.568,83.116,89.541)
C2': (19.593,81.468,87.853)
O2': (20.775,80.769,88.185)
N1: (17.165,81.130,88.292)
O4: (13.504,81.062,86.637)
O2: (17.571,79.165,87.189)
C6: (16.274,82.146,88.563)
C5: (15.047,82.186,88.041)
O3': (20.913,83.503,87.533)
OP1: (9.018,83.293,86.925)
OP2: (8.294,85.507,85.849)
C3': (13.087,85.539,86.394)
C1': (13.985,85.921,84.256)
C5': (11.606,83.606,85.624)
O4': (13.189,84.750,84.211)
C8: (11.939,87.353,83.660)
O2': (15.510,85.631,86.090)
C6: (13.188,89.887,81.567)
C5: (12.836,88.816,82.404)
C4: (13.850,87.946,82.766)
P: (9.051,84.231,85.777)
C4': (12.951,84.279,85.561)
C2': (14.272,86.217,85.730)
C2: (15.345,89.060,81.619)
N1: (14.477,89.983,81.188)
N3: (15.139,88.011,82.398)
N6: (12.326,90.805,81.125)
N7: (11.631,88.428,82.973)
N9: (13.270,87.013,83.591)
O5': (10.564,84.576,85.435)
O3': (13.316,85.257,87.762)
OP2: (8.294,85.507,85.849)
C3': (13.087,85.539,86.394)
C1': (13.985,85.921,84.256)
C5': (11.606,83.606,85.624)
O4': (13.189,84.750,84.211)
C8: (11.939,87.353,83.660)
O2': (15.510,85.631,86.090)
C6: (13.188,89.887,81.567)
C5: (12.836,88.816,82.404)
C4: (13.850,87.946,82.766)
P: (9.051,84.231,85.777)
C4': (12.951,84.279,85.561)
C2': (14.272,86.217,85.730)
C2: (15.345,89.060,81.619)
N1: (14.477,89.983,81.188)
N3: (15.139,88.011,82.398)
N6: (12.326,90.805,81.125)
N7: (11.631,88.428,82.973)
N9: (13.270,87.013,83.591)
O5': (10.564,84.576,85.435)
O3': (13.316,85.257,87.762)
Image (generated by PyMOL):