Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DJ2:A39:A38
Extra
PDB:
ATOM 1 O3' A A 38 -6.844 63.321 -2.256 1.00 47.10 O
ATOM 2 P U A 39 -7.285 62.901 -3.736 1.00 46.06 P
ATOM 3 OP1 U A 39 -6.359 63.534 -4.702 1.00 46.38 O
ATOM 4 OP2 U A 39 -8.739 63.157 -3.834 1.00 46.11 O
ATOM 5 O5' U A 39 -7.060 61.317 -3.789 1.00 45.25 O
ATOM 6 C5' U A 39 -6.077 60.660 -2.986 1.00 43.85 C
ATOM 7 C4' U A 39 -6.708 59.704 -1.981 1.00 42.76 C
ATOM 8 O4' U A 39 -7.207 60.439 -0.828 1.00 42.76 O
ATOM 9 C3' U A 39 -7.884 58.851 -2.469 1.00 41.86 C
ATOM 10 O3' U A 39 -7.781 57.527 -1.924 1.00 40.31 O
ATOM 11 C2' U A 39 -9.087 59.599 -1.891 1.00 42.14 C
ATOM 12 O2' U A 39 -10.243 58.791 -1.779 1.00 42.08 O
ATOM 13 C1' U A 39 -8.507 59.962 -0.524 1.00 42.48 C
ATOM 14 N1 U A 39 -9.271 60.966 0.314 1.00 42.42 N
ATOM 15 C2 U A 39 -10.196 60.514 1.247 1.00 42.33 C
ATOM 16 O2 U A 39 -10.452 59.339 1.444 1.00 42.48 O
ATOM 17 N3 U A 39 -10.830 61.499 1.964 1.00 42.19 N
ATOM 18 C4 U A 39 -10.644 62.864 1.854 1.00 42.37 C
ATOM 19 O4 U A 39 -11.291 63.620 2.571 1.00 42.48 O
ATOM 20 C5 U A 39 -9.668 63.264 0.869 1.00 42.51 C
ATOM 21 C6 U A 39 -9.033 62.323 0.155 1.00 42.45 C
ATOM 22 P C A 40 -7.029 56.315 -2.661 1.00 38.72 P
ATOM 23 OP1 C A 40 -6.336 56.838 -3.859 1.00 38.56 O
ATOM 24 OP2 C A 40 -8.015 55.221 -2.791 1.00 38.87 O
ATOM 25 O5' C A 40 -5.909 55.855 -1.614 1.00 37.14 O
TER
ATOM 1 O3' C B 37 -1.225 65.428 -0.271 1.00 47.06 O
ATOM 2 P A B 38 -1.810 66.287 -1.493 1.00 47.59 P
ATOM 3 OP1 A B 38 -0.900 66.076 -2.638 1.00 47.70 O
ATOM 4 OP2 A B 38 -2.102 67.665 -1.033 1.00 47.47 O
ATOM 5 O5' A B 38 -3.196 65.565 -1.836 1.00 47.98 O
ATOM 6 C5' A B 38 -3.350 64.145 -1.745 1.00 48.44 C
ATOM 7 C4' A B 38 -4.734 63.798 -1.221 1.00 48.47 C
ATOM 8 O4' A B 38 -4.907 64.325 0.121 1.00 48.88 O
ATOM 9 C3' A B 38 -5.889 64.357 -2.048 1.00 48.20 C
ATOM 10 O3' A B 38 -6.844 63.321 -2.256 1.00 47.10 O
ATOM 11 C2' A B 38 -6.430 65.510 -1.200 1.00 48.78 C
ATOM 12 O2' A B 38 -7.812 65.759 -1.388 1.00 48.84 O
ATOM 13 C1' A B 38 -6.146 65.001 0.211 1.00 49.34 C
ATOM 14 N9 A B 38 -6.038 66.056 1.219 1.00 49.70 N
ATOM 15 C8 A B 38 -5.073 67.024 1.296 1.00 49.95 C
ATOM 16 N7 A B 38 -5.219 67.845 2.308 1.00 50.12 N
ATOM 17 C5 A B 38 -6.361 67.386 2.945 1.00 50.06 C
ATOM 18 C6 A B 38 -7.055 67.828 4.097 1.00 49.83 C
ATOM 19 N6 A B 38 -6.667 68.878 4.829 1.00 49.61 N
ATOM 20 N1 A B 38 -8.165 67.146 4.469 1.00 49.78 N
ATOM 21 C2 A B 38 -8.553 66.092 3.736 1.00 49.87 C
ATOM 22 N3 A B 38 -7.983 65.585 2.638 1.00 49.91 N
ATOM 23 C4 A B 38 -6.881 66.281 2.288 1.00 49.97 C
ATOM 24 P U B 39 -7.285 62.901 -3.736 1.00 46.06 P
ATOM 25 OP1 U B 39 -6.359 63.534 -4.702 1.00 46.38 O
ATOM 26 OP2 U B 39 -8.739 63.157 -3.834 1.00 46.11 O
ATOM 27 O5' U B 39 -7.060 61.317 -3.789 1.00 45.25 O
TER
ATOM 2 P U A 39 -7.285 62.901 -3.736 1.00 46.06 P
ATOM 3 OP1 U A 39 -6.359 63.534 -4.702 1.00 46.38 O
ATOM 4 OP2 U A 39 -8.739 63.157 -3.834 1.00 46.11 O
ATOM 5 O5' U A 39 -7.060 61.317 -3.789 1.00 45.25 O
ATOM 6 C5' U A 39 -6.077 60.660 -2.986 1.00 43.85 C
ATOM 7 C4' U A 39 -6.708 59.704 -1.981 1.00 42.76 C
ATOM 8 O4' U A 39 -7.207 60.439 -0.828 1.00 42.76 O
ATOM 9 C3' U A 39 -7.884 58.851 -2.469 1.00 41.86 C
ATOM 10 O3' U A 39 -7.781 57.527 -1.924 1.00 40.31 O
ATOM 11 C2' U A 39 -9.087 59.599 -1.891 1.00 42.14 C
ATOM 12 O2' U A 39 -10.243 58.791 -1.779 1.00 42.08 O
ATOM 13 C1' U A 39 -8.507 59.962 -0.524 1.00 42.48 C
ATOM 14 N1 U A 39 -9.271 60.966 0.314 1.00 42.42 N
ATOM 15 C2 U A 39 -10.196 60.514 1.247 1.00 42.33 C
ATOM 16 O2 U A 39 -10.452 59.339 1.444 1.00 42.48 O
ATOM 17 N3 U A 39 -10.830 61.499 1.964 1.00 42.19 N
ATOM 18 C4 U A 39 -10.644 62.864 1.854 1.00 42.37 C
ATOM 19 O4 U A 39 -11.291 63.620 2.571 1.00 42.48 O
ATOM 20 C5 U A 39 -9.668 63.264 0.869 1.00 42.51 C
ATOM 21 C6 U A 39 -9.033 62.323 0.155 1.00 42.45 C
ATOM 22 P C A 40 -7.029 56.315 -2.661 1.00 38.72 P
ATOM 23 OP1 C A 40 -6.336 56.838 -3.859 1.00 38.56 O
ATOM 24 OP2 C A 40 -8.015 55.221 -2.791 1.00 38.87 O
ATOM 25 O5' C A 40 -5.909 55.855 -1.614 1.00 37.14 O
TER
ATOM 1 O3' C B 37 -1.225 65.428 -0.271 1.00 47.06 O
ATOM 2 P A B 38 -1.810 66.287 -1.493 1.00 47.59 P
ATOM 3 OP1 A B 38 -0.900 66.076 -2.638 1.00 47.70 O
ATOM 4 OP2 A B 38 -2.102 67.665 -1.033 1.00 47.47 O
ATOM 5 O5' A B 38 -3.196 65.565 -1.836 1.00 47.98 O
ATOM 6 C5' A B 38 -3.350 64.145 -1.745 1.00 48.44 C
ATOM 7 C4' A B 38 -4.734 63.798 -1.221 1.00 48.47 C
ATOM 8 O4' A B 38 -4.907 64.325 0.121 1.00 48.88 O
ATOM 9 C3' A B 38 -5.889 64.357 -2.048 1.00 48.20 C
ATOM 10 O3' A B 38 -6.844 63.321 -2.256 1.00 47.10 O
ATOM 11 C2' A B 38 -6.430 65.510 -1.200 1.00 48.78 C
ATOM 12 O2' A B 38 -7.812 65.759 -1.388 1.00 48.84 O
ATOM 13 C1' A B 38 -6.146 65.001 0.211 1.00 49.34 C
ATOM 14 N9 A B 38 -6.038 66.056 1.219 1.00 49.70 N
ATOM 15 C8 A B 38 -5.073 67.024 1.296 1.00 49.95 C
ATOM 16 N7 A B 38 -5.219 67.845 2.308 1.00 50.12 N
ATOM 17 C5 A B 38 -6.361 67.386 2.945 1.00 50.06 C
ATOM 18 C6 A B 38 -7.055 67.828 4.097 1.00 49.83 C
ATOM 19 N6 A B 38 -6.667 68.878 4.829 1.00 49.61 N
ATOM 20 N1 A B 38 -8.165 67.146 4.469 1.00 49.78 N
ATOM 21 C2 A B 38 -8.553 66.092 3.736 1.00 49.87 C
ATOM 22 N3 A B 38 -7.983 65.585 2.638 1.00 49.91 N
ATOM 23 C4 A B 38 -6.881 66.281 2.288 1.00 49.97 C
ATOM 24 P U B 39 -7.285 62.901 -3.736 1.00 46.06 P
ATOM 25 OP1 U B 39 -6.359 63.534 -4.702 1.00 46.38 O
ATOM 26 OP2 U B 39 -8.739 63.157 -3.834 1.00 46.11 O
ATOM 27 O5' U B 39 -7.060 61.317 -3.789 1.00 45.25 O
TER
Atoms:
C4: (-10.644,62.864,1.854)
N3: (-10.830,61.499,1.964)
OP1: (-6.359,63.534,-4.702)
OP2: (-8.739,63.157,-3.834)
C2: (-10.196,60.514,1.247)
C1': (-8.507,59.962,-0.524)
C3': (-7.884,58.851,-2.469)
O5': (-7.060,61.317,-3.789)
O4': (-7.207,60.439,-0.828)
C5': (-6.077,60.660,-2.986)
P: (-7.285,62.901,-3.736)
C4': (-6.708,59.704,-1.981)
C2': (-9.087,59.599,-1.891)
O2': (-10.243,58.791,-1.779)
N1: (-9.271,60.966,0.314)
O4: (-11.291,63.620,2.571)
O2: (-10.452,59.339,1.444)
C6: (-9.033,62.323,0.155)
C5: (-9.668,63.264,0.869)
O3': (-7.781,57.527,-1.924)
N3: (-10.830,61.499,1.964)
OP1: (-6.359,63.534,-4.702)
OP2: (-8.739,63.157,-3.834)
C2: (-10.196,60.514,1.247)
C1': (-8.507,59.962,-0.524)
C3': (-7.884,58.851,-2.469)
O5': (-7.060,61.317,-3.789)
O4': (-7.207,60.439,-0.828)
C5': (-6.077,60.660,-2.986)
P: (-7.285,62.901,-3.736)
C4': (-6.708,59.704,-1.981)
C2': (-9.087,59.599,-1.891)
O2': (-10.243,58.791,-1.779)
N1: (-9.271,60.966,0.314)
O4: (-11.291,63.620,2.571)
O2: (-10.452,59.339,1.444)
C6: (-9.033,62.323,0.155)
C5: (-9.668,63.264,0.869)
O3': (-7.781,57.527,-1.924)
OP1: (-0.900,66.076,-2.638)
OP2: (-2.102,67.665,-1.033)
C3': (-5.889,64.357,-2.048)
C1': (-6.146,65.001,0.211)
C5': (-3.350,64.145,-1.745)
O4': (-4.907,64.325,0.121)
C8: (-5.073,67.024,1.296)
O2': (-7.812,65.759,-1.388)
C6: (-7.055,67.828,4.097)
C5: (-6.361,67.386,2.945)
C4: (-6.881,66.281,2.288)
P: (-1.810,66.287,-1.493)
C4': (-4.734,63.798,-1.221)
C2': (-6.430,65.510,-1.200)
C2: (-8.553,66.092,3.736)
N1: (-8.165,67.146,4.469)
N3: (-7.983,65.585,2.638)
N6: (-6.667,68.878,4.829)
N7: (-5.219,67.845,2.308)
N9: (-6.038,66.056,1.219)
O5': (-3.196,65.565,-1.836)
O3': (-6.844,63.321,-2.256)
OP2: (-2.102,67.665,-1.033)
C3': (-5.889,64.357,-2.048)
C1': (-6.146,65.001,0.211)
C5': (-3.350,64.145,-1.745)
O4': (-4.907,64.325,0.121)
C8: (-5.073,67.024,1.296)
O2': (-7.812,65.759,-1.388)
C6: (-7.055,67.828,4.097)
C5: (-6.361,67.386,2.945)
C4: (-6.881,66.281,2.288)
P: (-1.810,66.287,-1.493)
C4': (-4.734,63.798,-1.221)
C2': (-6.430,65.510,-1.200)
C2: (-8.553,66.092,3.736)
N1: (-8.165,67.146,4.469)
N3: (-7.983,65.585,2.638)
N6: (-6.667,68.878,4.829)
N7: (-5.219,67.845,2.308)
N9: (-6.038,66.056,1.219)
O5': (-3.196,65.565,-1.836)
O3': (-6.844,63.321,-2.256)
Image (generated by PyMOL):