Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01223:0553
Extra
PDB:
ATOM 1 O3' C A1222 7.824 89.277 98.044 1.00 46.12 O
ATOM 2 P U A1223 7.519 89.455 96.488 1.00 47.25 P
ATOM 3 OP1 U A1223 6.688 88.303 96.051 1.00 48.19 O
ATOM 4 OP2 U A1223 8.802 89.722 95.812 1.00 46.35 O
ATOM 5 O5' U A1223 6.661 90.794 96.444 1.00 44.92 O
ATOM 6 C5' U A1223 5.385 90.851 97.088 1.00 46.00 C
ATOM 7 C4' U A1223 4.833 92.249 97.042 1.00 46.71 C
ATOM 8 O4' U A1223 5.650 93.129 97.851 1.00 47.82 O
ATOM 9 C3' U A1223 4.827 92.928 95.688 1.00 47.22 C
ATOM 10 O3' U A1223 3.746 92.501 94.885 1.00 51.28 O
ATOM 11 C2' U A1223 4.699 94.390 96.077 1.00 46.20 C
ATOM 12 O2' U A1223 3.388 94.743 96.441 1.00 42.89 O
ATOM 13 C1' U A1223 5.597 94.440 97.311 1.00 47.09 C
ATOM 14 N1 U A1223 6.959 94.880 96.970 1.00 49.31 N
ATOM 15 C2 U A1223 7.200 96.239 96.991 1.00 50.32 C
ATOM 16 O2 U A1223 6.350 97.057 97.294 1.00 48.77 O
ATOM 17 N3 U A1223 8.473 96.609 96.637 1.00 50.38 N
ATOM 18 C4 U A1223 9.501 95.783 96.267 1.00 48.76 C
ATOM 19 O4 U A1223 10.551 96.282 95.877 1.00 50.59 O
ATOM 20 C5 U A1223 9.185 94.390 96.285 1.00 48.15 C
ATOM 21 C6 U A1223 7.957 93.993 96.629 1.00 47.85 C
ATOM 22 P G A1224 3.781 92.763 93.302 1.00 54.04 P
ATOM 23 OP1 G A1224 2.825 91.798 92.690 1.00 52.00 O
ATOM 24 OP2 G A1224 5.202 92.776 92.854 1.00 52.27 O
ATOM 25 O5' G A1224 3.189 94.233 93.161 1.00 51.28 O
TER
ATOM 1 O3' G B 552 -5.475 94.979 97.053 1.00 67.42 O
ATOM 2 P A B 553 -5.020 94.060 98.295 1.00 66.34 P
ATOM 3 OP1 A B 553 -5.725 92.759 98.174 1.00 64.48 O
ATOM 4 OP2 A B 553 -5.115 94.837 99.556 1.00 64.86 O
ATOM 5 O5' A B 553 -3.482 93.787 98.007 1.00 65.46 O
ATOM 6 C5' A B 553 -3.072 93.069 96.830 1.00 63.99 C
ATOM 7 C4' A B 553 -1.579 93.166 96.662 1.00 62.43 C
ATOM 8 O4' A B 553 -1.208 94.515 96.283 1.00 60.96 O
ATOM 9 C3' A B 553 -0.777 92.914 97.924 1.00 61.88 C
ATOM 10 O3' A B 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 11 C2' A B 553 0.542 93.588 97.594 1.00 61.24 C
ATOM 12 O2' A B 553 1.307 92.770 96.727 1.00 60.53 O
ATOM 13 C1' A B 553 0.058 94.828 96.835 1.00 60.20 C
ATOM 14 N9 A B 553 -0.077 96.051 97.631 1.00 59.58 N
ATOM 15 C8 A B 553 -1.224 96.580 98.166 1.00 59.47 C
ATOM 16 N7 A B 553 -1.041 97.719 98.791 1.00 60.73 N
ATOM 17 C5 A B 553 0.322 97.955 98.671 1.00 59.87 C
ATOM 18 C6 A B 553 1.155 99.016 99.114 1.00 60.20 C
ATOM 19 N6 A B 553 0.721 100.077 99.802 1.00 58.54 N
ATOM 20 N1 A B 553 2.468 98.945 98.820 1.00 59.09 N
ATOM 21 C2 A B 553 2.910 97.884 98.138 1.00 60.12 C
ATOM 22 N3 A B 553 2.236 96.831 97.671 1.00 59.63 N
ATOM 23 C4 A B 553 0.931 96.928 97.970 1.00 60.05 C
ATOM 24 P A B 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 25 OP1 A B 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 26 OP2 A B 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 27 O5' A B 554 0.728 91.415 100.306 1.00 61.60 O
TER
ATOM 2 P U A1223 7.519 89.455 96.488 1.00 47.25 P
ATOM 3 OP1 U A1223 6.688 88.303 96.051 1.00 48.19 O
ATOM 4 OP2 U A1223 8.802 89.722 95.812 1.00 46.35 O
ATOM 5 O5' U A1223 6.661 90.794 96.444 1.00 44.92 O
ATOM 6 C5' U A1223 5.385 90.851 97.088 1.00 46.00 C
ATOM 7 C4' U A1223 4.833 92.249 97.042 1.00 46.71 C
ATOM 8 O4' U A1223 5.650 93.129 97.851 1.00 47.82 O
ATOM 9 C3' U A1223 4.827 92.928 95.688 1.00 47.22 C
ATOM 10 O3' U A1223 3.746 92.501 94.885 1.00 51.28 O
ATOM 11 C2' U A1223 4.699 94.390 96.077 1.00 46.20 C
ATOM 12 O2' U A1223 3.388 94.743 96.441 1.00 42.89 O
ATOM 13 C1' U A1223 5.597 94.440 97.311 1.00 47.09 C
ATOM 14 N1 U A1223 6.959 94.880 96.970 1.00 49.31 N
ATOM 15 C2 U A1223 7.200 96.239 96.991 1.00 50.32 C
ATOM 16 O2 U A1223 6.350 97.057 97.294 1.00 48.77 O
ATOM 17 N3 U A1223 8.473 96.609 96.637 1.00 50.38 N
ATOM 18 C4 U A1223 9.501 95.783 96.267 1.00 48.76 C
ATOM 19 O4 U A1223 10.551 96.282 95.877 1.00 50.59 O
ATOM 20 C5 U A1223 9.185 94.390 96.285 1.00 48.15 C
ATOM 21 C6 U A1223 7.957 93.993 96.629 1.00 47.85 C
ATOM 22 P G A1224 3.781 92.763 93.302 1.00 54.04 P
ATOM 23 OP1 G A1224 2.825 91.798 92.690 1.00 52.00 O
ATOM 24 OP2 G A1224 5.202 92.776 92.854 1.00 52.27 O
ATOM 25 O5' G A1224 3.189 94.233 93.161 1.00 51.28 O
TER
ATOM 1 O3' G B 552 -5.475 94.979 97.053 1.00 67.42 O
ATOM 2 P A B 553 -5.020 94.060 98.295 1.00 66.34 P
ATOM 3 OP1 A B 553 -5.725 92.759 98.174 1.00 64.48 O
ATOM 4 OP2 A B 553 -5.115 94.837 99.556 1.00 64.86 O
ATOM 5 O5' A B 553 -3.482 93.787 98.007 1.00 65.46 O
ATOM 6 C5' A B 553 -3.072 93.069 96.830 1.00 63.99 C
ATOM 7 C4' A B 553 -1.579 93.166 96.662 1.00 62.43 C
ATOM 8 O4' A B 553 -1.208 94.515 96.283 1.00 60.96 O
ATOM 9 C3' A B 553 -0.777 92.914 97.924 1.00 61.88 C
ATOM 10 O3' A B 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 11 C2' A B 553 0.542 93.588 97.594 1.00 61.24 C
ATOM 12 O2' A B 553 1.307 92.770 96.727 1.00 60.53 O
ATOM 13 C1' A B 553 0.058 94.828 96.835 1.00 60.20 C
ATOM 14 N9 A B 553 -0.077 96.051 97.631 1.00 59.58 N
ATOM 15 C8 A B 553 -1.224 96.580 98.166 1.00 59.47 C
ATOM 16 N7 A B 553 -1.041 97.719 98.791 1.00 60.73 N
ATOM 17 C5 A B 553 0.322 97.955 98.671 1.00 59.87 C
ATOM 18 C6 A B 553 1.155 99.016 99.114 1.00 60.20 C
ATOM 19 N6 A B 553 0.721 100.077 99.802 1.00 58.54 N
ATOM 20 N1 A B 553 2.468 98.945 98.820 1.00 59.09 N
ATOM 21 C2 A B 553 2.910 97.884 98.138 1.00 60.12 C
ATOM 22 N3 A B 553 2.236 96.831 97.671 1.00 59.63 N
ATOM 23 C4 A B 553 0.931 96.928 97.970 1.00 60.05 C
ATOM 24 P A B 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 25 OP1 A B 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 26 OP2 A B 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 27 O5' A B 554 0.728 91.415 100.306 1.00 61.60 O
TER
Atoms:
C4: (9.501,95.783,96.267)
N3: (8.473,96.609,96.637)
OP1: (6.688,88.303,96.051)
OP2: (8.802,89.722,95.812)
C2: (7.200,96.239,96.991)
C1': (5.597,94.440,97.311)
C3': (4.827,92.928,95.688)
O5': (6.661,90.794,96.444)
O4': (5.650,93.129,97.851)
C5': (5.385,90.851,97.088)
P: (7.519,89.455,96.488)
C4': (4.833,92.249,97.042)
C2': (4.699,94.390,96.077)
O2': (3.388,94.743,96.441)
N1: (6.959,94.880,96.970)
O4: (10.551,96.282,95.877)
O2: (6.350,97.057,97.294)
C6: (7.957,93.993,96.629)
C5: (9.185,94.390,96.285)
O3': (3.746,92.501,94.885)
N3: (8.473,96.609,96.637)
OP1: (6.688,88.303,96.051)
OP2: (8.802,89.722,95.812)
C2: (7.200,96.239,96.991)
C1': (5.597,94.440,97.311)
C3': (4.827,92.928,95.688)
O5': (6.661,90.794,96.444)
O4': (5.650,93.129,97.851)
C5': (5.385,90.851,97.088)
P: (7.519,89.455,96.488)
C4': (4.833,92.249,97.042)
C2': (4.699,94.390,96.077)
O2': (3.388,94.743,96.441)
N1: (6.959,94.880,96.970)
O4: (10.551,96.282,95.877)
O2: (6.350,97.057,97.294)
C6: (7.957,93.993,96.629)
C5: (9.185,94.390,96.285)
O3': (3.746,92.501,94.885)
OP1: (-5.725,92.759,98.174)
OP2: (-5.115,94.837,99.556)
C3': (-0.777,92.914,97.924)
C1': (0.058,94.828,96.835)
C5': (-3.072,93.069,96.830)
O4': (-1.208,94.515,96.283)
C8: (-1.224,96.580,98.166)
O2': (1.307,92.770,96.727)
C6: (1.155,99.016,99.114)
C5: (0.322,97.955,98.671)
C4: (0.931,96.928,97.970)
P: (-5.020,94.060,98.295)
C4': (-1.579,93.166,96.662)
C2': (0.542,93.588,97.594)
C2: (2.910,97.884,98.138)
N1: (2.468,98.945,98.820)
N3: (2.236,96.831,97.671)
N6: (0.721,100.077,99.802)
N7: (-1.041,97.719,98.791)
N9: (-0.077,96.051,97.631)
O5': (-3.482,93.787,98.007)
O3': (-0.631,91.525,98.176)
OP2: (-5.115,94.837,99.556)
C3': (-0.777,92.914,97.924)
C1': (0.058,94.828,96.835)
C5': (-3.072,93.069,96.830)
O4': (-1.208,94.515,96.283)
C8: (-1.224,96.580,98.166)
O2': (1.307,92.770,96.727)
C6: (1.155,99.016,99.114)
C5: (0.322,97.955,98.671)
C4: (0.931,96.928,97.970)
P: (-5.020,94.060,98.295)
C4': (-1.579,93.166,96.662)
C2': (0.542,93.588,97.594)
C2: (2.910,97.884,98.138)
N1: (2.468,98.945,98.820)
N3: (2.236,96.831,97.671)
N6: (0.721,100.077,99.802)
N7: (-1.041,97.719,98.791)
N9: (-0.077,96.051,97.631)
O5': (-3.482,93.787,98.007)
O3': (-0.631,91.525,98.176)
Image (generated by PyMOL):