Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1390:A1388
Extra
PDB:
ATOM 1 O3' U A1389 -2.301 -43.777 24.364 1.00 12.13 O
ATOM 2 P U A1390 -1.454 -45.073 24.725 1.00 0.01 P
ATOM 3 OP1 U A1390 -0.148 -44.626 25.181 1.00 0.01 O
ATOM 4 OP2 U A1390 -1.527 -45.951 23.566 1.00 0.01 O
ATOM 5 O5' U A1390 -2.248 -45.700 25.951 1.00 0.01 O
ATOM 6 C5' U A1390 -2.082 -45.164 27.262 1.00 0.01 C
ATOM 7 C4' U A1390 -2.343 -46.180 28.367 1.00 0.01 C
ATOM 8 O4' U A1390 -3.766 -46.407 28.487 1.00 0.01 O
ATOM 9 C3' U A1390 -1.710 -47.555 28.190 1.00 0.01 C
ATOM 10 O3' U A1390 -1.257 -48.035 29.459 1.00 0.01 O
ATOM 11 C2' U A1390 -2.874 -48.396 27.681 1.00 0.01 C
ATOM 12 O2' U A1390 -2.784 -49.771 27.939 1.00 0.01 O
ATOM 13 C1' U A1390 -4.043 -47.774 28.406 1.00 0.01 C
ATOM 14 N1 U A1390 -5.273 -47.905 27.694 1.00 0.06 N
ATOM 15 C2 U A1390 -6.288 -48.547 28.287 1.00 0.06 C
ATOM 16 O2 U A1390 -6.191 -48.994 29.399 1.00 0.06 O
ATOM 17 N3 U A1390 -7.407 -48.640 27.533 1.00 0.06 N
ATOM 18 C4 U A1390 -7.596 -48.141 26.274 1.00 0.06 C
ATOM 19 O4 U A1390 -8.676 -48.307 25.728 1.00 0.06 O
ATOM 20 C5 U A1390 -6.479 -47.481 25.711 1.00 0.06 C
ATOM 21 C6 U A1390 -5.374 -47.392 26.444 1.00 0.06 C
ATOM 22 P C A1391 0.300 -47.886 29.864 1.00 0.01 P
ATOM 23 OP1 C A1391 0.411 -48.055 31.326 1.00 0.01 O
ATOM 24 OP2 C A1391 0.778 -46.629 29.279 1.00 0.01 O
ATOM 25 O5' C A1391 0.968 -49.128 29.136 1.00 0.01 O
TER
ATOM 1 O3' U B1387 -8.956 -52.876 22.009 1.00 0.01 O
ATOM 2 P A B1388 -8.961 -51.467 21.221 1.00 0.01 P
ATOM 3 OP1 A B1388 -10.316 -50.908 21.353 1.00 0.01 O
ATOM 4 OP2 A B1388 -8.422 -51.707 19.870 1.00 0.01 O
ATOM 5 O5' A B1388 -7.937 -50.605 22.071 1.00 0.01 O
ATOM 6 C5' A B1388 -7.007 -49.740 21.448 1.00 0.01 C
ATOM 7 C4' A B1388 -5.933 -49.350 22.410 1.00 0.01 C
ATOM 8 O4' A B1388 -4.995 -50.414 22.539 1.00 0.01 O
ATOM 9 C3' A B1388 -5.078 -48.156 22.033 1.00 0.01 C
ATOM 10 O3' A B1388 -5.679 -46.931 22.403 1.00 0.01 O
ATOM 11 C2' A B1388 -3.761 -48.410 22.772 1.00 0.01 C
ATOM 12 O2' A B1388 -3.714 -47.677 23.974 1.00 0.01 O
ATOM 13 C1' A B1388 -3.838 -49.892 23.120 1.00 0.01 C
ATOM 14 N9 A B1388 -2.660 -50.659 22.695 1.00 0.10 N
ATOM 15 C8 A B1388 -1.816 -50.660 21.627 1.00 0.10 C
ATOM 16 N7 A B1388 -0.870 -51.560 21.748 1.00 0.10 N
ATOM 17 C5 A B1388 -1.108 -52.157 22.967 1.00 0.10 C
ATOM 18 C6 A B1388 -0.482 -53.185 23.704 1.00 0.10 C
ATOM 19 N6 A B1388 0.599 -53.890 23.325 1.00 0.10 N
ATOM 20 N1 A B1388 -1.024 -53.512 24.899 1.00 0.10 N
ATOM 21 C2 A B1388 -2.102 -52.823 25.303 1.00 0.10 C
ATOM 22 N3 A B1388 -2.767 -51.845 24.706 1.00 0.10 N
ATOM 23 C4 A B1388 -2.202 -51.588 23.539 1.00 0.10 C
ATOM 24 P U B1389 -6.266 -45.943 21.287 1.00 12.13 P
ATOM 25 OP1 U B1389 -7.639 -45.605 21.697 1.00 12.13 O
ATOM 26 OP2 U B1389 -6.045 -46.582 19.965 1.00 12.13 O
ATOM 27 O5' U B1389 -5.350 -44.667 21.433 1.00 12.13 O
TER
ATOM 2 P U A1390 -1.454 -45.073 24.725 1.00 0.01 P
ATOM 3 OP1 U A1390 -0.148 -44.626 25.181 1.00 0.01 O
ATOM 4 OP2 U A1390 -1.527 -45.951 23.566 1.00 0.01 O
ATOM 5 O5' U A1390 -2.248 -45.700 25.951 1.00 0.01 O
ATOM 6 C5' U A1390 -2.082 -45.164 27.262 1.00 0.01 C
ATOM 7 C4' U A1390 -2.343 -46.180 28.367 1.00 0.01 C
ATOM 8 O4' U A1390 -3.766 -46.407 28.487 1.00 0.01 O
ATOM 9 C3' U A1390 -1.710 -47.555 28.190 1.00 0.01 C
ATOM 10 O3' U A1390 -1.257 -48.035 29.459 1.00 0.01 O
ATOM 11 C2' U A1390 -2.874 -48.396 27.681 1.00 0.01 C
ATOM 12 O2' U A1390 -2.784 -49.771 27.939 1.00 0.01 O
ATOM 13 C1' U A1390 -4.043 -47.774 28.406 1.00 0.01 C
ATOM 14 N1 U A1390 -5.273 -47.905 27.694 1.00 0.06 N
ATOM 15 C2 U A1390 -6.288 -48.547 28.287 1.00 0.06 C
ATOM 16 O2 U A1390 -6.191 -48.994 29.399 1.00 0.06 O
ATOM 17 N3 U A1390 -7.407 -48.640 27.533 1.00 0.06 N
ATOM 18 C4 U A1390 -7.596 -48.141 26.274 1.00 0.06 C
ATOM 19 O4 U A1390 -8.676 -48.307 25.728 1.00 0.06 O
ATOM 20 C5 U A1390 -6.479 -47.481 25.711 1.00 0.06 C
ATOM 21 C6 U A1390 -5.374 -47.392 26.444 1.00 0.06 C
ATOM 22 P C A1391 0.300 -47.886 29.864 1.00 0.01 P
ATOM 23 OP1 C A1391 0.411 -48.055 31.326 1.00 0.01 O
ATOM 24 OP2 C A1391 0.778 -46.629 29.279 1.00 0.01 O
ATOM 25 O5' C A1391 0.968 -49.128 29.136 1.00 0.01 O
TER
ATOM 1 O3' U B1387 -8.956 -52.876 22.009 1.00 0.01 O
ATOM 2 P A B1388 -8.961 -51.467 21.221 1.00 0.01 P
ATOM 3 OP1 A B1388 -10.316 -50.908 21.353 1.00 0.01 O
ATOM 4 OP2 A B1388 -8.422 -51.707 19.870 1.00 0.01 O
ATOM 5 O5' A B1388 -7.937 -50.605 22.071 1.00 0.01 O
ATOM 6 C5' A B1388 -7.007 -49.740 21.448 1.00 0.01 C
ATOM 7 C4' A B1388 -5.933 -49.350 22.410 1.00 0.01 C
ATOM 8 O4' A B1388 -4.995 -50.414 22.539 1.00 0.01 O
ATOM 9 C3' A B1388 -5.078 -48.156 22.033 1.00 0.01 C
ATOM 10 O3' A B1388 -5.679 -46.931 22.403 1.00 0.01 O
ATOM 11 C2' A B1388 -3.761 -48.410 22.772 1.00 0.01 C
ATOM 12 O2' A B1388 -3.714 -47.677 23.974 1.00 0.01 O
ATOM 13 C1' A B1388 -3.838 -49.892 23.120 1.00 0.01 C
ATOM 14 N9 A B1388 -2.660 -50.659 22.695 1.00 0.10 N
ATOM 15 C8 A B1388 -1.816 -50.660 21.627 1.00 0.10 C
ATOM 16 N7 A B1388 -0.870 -51.560 21.748 1.00 0.10 N
ATOM 17 C5 A B1388 -1.108 -52.157 22.967 1.00 0.10 C
ATOM 18 C6 A B1388 -0.482 -53.185 23.704 1.00 0.10 C
ATOM 19 N6 A B1388 0.599 -53.890 23.325 1.00 0.10 N
ATOM 20 N1 A B1388 -1.024 -53.512 24.899 1.00 0.10 N
ATOM 21 C2 A B1388 -2.102 -52.823 25.303 1.00 0.10 C
ATOM 22 N3 A B1388 -2.767 -51.845 24.706 1.00 0.10 N
ATOM 23 C4 A B1388 -2.202 -51.588 23.539 1.00 0.10 C
ATOM 24 P U B1389 -6.266 -45.943 21.287 1.00 12.13 P
ATOM 25 OP1 U B1389 -7.639 -45.605 21.697 1.00 12.13 O
ATOM 26 OP2 U B1389 -6.045 -46.582 19.965 1.00 12.13 O
ATOM 27 O5' U B1389 -5.350 -44.667 21.433 1.00 12.13 O
TER
Atoms:
C4: (-7.596,-48.141,26.274)
N3: (-7.407,-48.640,27.533)
OP1: (-0.148,-44.626,25.181)
OP2: (-1.527,-45.951,23.566)
C2: (-6.288,-48.547,28.287)
C1': (-4.043,-47.774,28.406)
C3': (-1.710,-47.555,28.190)
O5': (-2.248,-45.700,25.951)
O4': (-3.766,-46.407,28.487)
C5': (-2.082,-45.164,27.262)
P: (-1.454,-45.073,24.725)
C4': (-2.343,-46.180,28.367)
C2': (-2.874,-48.396,27.681)
O2': (-2.784,-49.771,27.939)
N1: (-5.273,-47.905,27.694)
O4: (-8.676,-48.307,25.728)
O2: (-6.191,-48.994,29.399)
C6: (-5.374,-47.392,26.444)
C5: (-6.479,-47.481,25.711)
O3': (-1.257,-48.035,29.459)
N3: (-7.407,-48.640,27.533)
OP1: (-0.148,-44.626,25.181)
OP2: (-1.527,-45.951,23.566)
C2: (-6.288,-48.547,28.287)
C1': (-4.043,-47.774,28.406)
C3': (-1.710,-47.555,28.190)
O5': (-2.248,-45.700,25.951)
O4': (-3.766,-46.407,28.487)
C5': (-2.082,-45.164,27.262)
P: (-1.454,-45.073,24.725)
C4': (-2.343,-46.180,28.367)
C2': (-2.874,-48.396,27.681)
O2': (-2.784,-49.771,27.939)
N1: (-5.273,-47.905,27.694)
O4: (-8.676,-48.307,25.728)
O2: (-6.191,-48.994,29.399)
C6: (-5.374,-47.392,26.444)
C5: (-6.479,-47.481,25.711)
O3': (-1.257,-48.035,29.459)
OP1: (-10.316,-50.908,21.353)
OP2: (-8.422,-51.707,19.870)
C3': (-5.078,-48.156,22.033)
C1': (-3.838,-49.892,23.120)
C5': (-7.007,-49.740,21.448)
O4': (-4.995,-50.414,22.539)
C8: (-1.816,-50.660,21.627)
O2': (-3.714,-47.677,23.974)
C6: (-0.482,-53.185,23.704)
C5: (-1.108,-52.157,22.967)
C4: (-2.202,-51.588,23.539)
P: (-8.961,-51.467,21.221)
C4': (-5.933,-49.350,22.410)
C2': (-3.761,-48.410,22.772)
C2: (-2.102,-52.823,25.303)
N1: (-1.024,-53.512,24.899)
N3: (-2.767,-51.845,24.706)
N6: (0.599,-53.890,23.325)
N7: (-0.870,-51.560,21.748)
N9: (-2.660,-50.659,22.695)
O5': (-7.937,-50.605,22.071)
O3': (-5.679,-46.931,22.403)
OP2: (-8.422,-51.707,19.870)
C3': (-5.078,-48.156,22.033)
C1': (-3.838,-49.892,23.120)
C5': (-7.007,-49.740,21.448)
O4': (-4.995,-50.414,22.539)
C8: (-1.816,-50.660,21.627)
O2': (-3.714,-47.677,23.974)
C6: (-0.482,-53.185,23.704)
C5: (-1.108,-52.157,22.967)
C4: (-2.202,-51.588,23.539)
P: (-8.961,-51.467,21.221)
C4': (-5.933,-49.350,22.410)
C2': (-3.761,-48.410,22.772)
C2: (-2.102,-52.823,25.303)
N1: (-1.024,-53.512,24.899)
N3: (-2.767,-51.845,24.706)
N6: (0.599,-53.890,23.325)
N7: (-0.870,-51.560,21.748)
N9: (-2.660,-50.659,22.695)
O5': (-7.937,-50.605,22.071)
O3': (-5.679,-46.931,22.403)
Image (generated by PyMOL):