Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E22:E21
Extra
PDB:
ATOM 1 O3' C A 21 -32.904 -5.563 22.084 1.00 34.11 O
ATOM 2 P U A 22 -33.094 -4.735 23.451 1.00 37.15 P
ATOM 3 OP1 U A 22 -33.248 -5.712 24.566 1.00 34.26 O
ATOM 4 OP2 U A 22 -34.161 -3.730 23.190 1.00 38.19 O
ATOM 5 O5' U A 22 -31.707 -3.985 23.653 1.00 33.06 O
ATOM 6 C5' U A 22 -30.634 -4.634 24.315 1.00 34.30 C
ATOM 7 C4' U A 22 -29.340 -3.937 24.000 1.00 34.98 C
ATOM 8 O4' U A 22 -29.098 -4.034 22.570 1.00 37.33 O
ATOM 9 C3' U A 22 -29.310 -2.449 24.327 1.00 34.87 C
ATOM 10 O3' U A 22 -27.998 -2.076 24.688 1.00 32.46 O
ATOM 11 C2' U A 22 -29.672 -1.798 23.003 1.00 36.03 C
ATOM 12 O2' U A 22 -29.119 -0.505 22.890 1.00 35.22 O
ATOM 13 C1' U A 22 -28.999 -2.739 22.011 1.00 37.21 C
ATOM 14 N1 U A 22 -29.678 -2.748 20.709 1.00 37.80 N
ATOM 15 C2 U A 22 -29.131 -1.993 19.693 1.00 39.20 C
ATOM 16 O2 U A 22 -28.134 -1.308 19.832 1.00 41.47 O
ATOM 17 N3 U A 22 -29.796 -2.060 18.503 1.00 41.33 N
ATOM 18 C4 U A 22 -30.935 -2.785 18.230 1.00 42.63 C
ATOM 19 O4 U A 22 -31.417 -2.745 17.093 1.00 44.85 O
ATOM 20 C5 U A 22 -31.449 -3.533 19.340 1.00 40.79 C
ATOM 21 C6 U A 22 -30.815 -3.487 20.511 1.00 38.58 C
ATOM 22 P C A 23 -27.660 -1.840 26.230 1.00 32.43 P
ATOM 23 OP1 C A 23 -28.566 -0.760 26.701 1.00 32.99 O
ATOM 24 OP2 C A 23 -26.192 -1.693 26.380 1.00 29.27 O
ATOM 25 O5' C A 23 -28.116 -3.208 26.907 1.00 29.48 O
TER
ATOM 1 O3' C B 20 -33.811 -12.155 22.581 1.00 23.89 O
ATOM 2 P C B 21 -34.916 -11.006 22.370 1.00 23.00 P
ATOM 3 OP1 C B 21 -35.456 -10.727 23.724 1.00 23.95 O
ATOM 4 OP2 C B 21 -35.844 -11.383 21.278 1.00 23.50 O
ATOM 5 O5' C B 21 -34.088 -9.743 21.871 1.00 22.50 O
ATOM 6 C5' C B 21 -33.046 -9.211 22.674 1.00 25.90 C
ATOM 7 C4' C B 21 -32.532 -7.929 22.081 1.00 27.66 C
ATOM 8 O4' C B 21 -32.025 -8.197 20.745 1.00 26.61 O
ATOM 9 C3' C B 21 -33.564 -6.819 21.920 1.00 29.37 C
ATOM 10 O3' C B 21 -32.904 -5.563 22.084 1.00 34.11 O
ATOM 11 C2' C B 21 -34.000 -6.984 20.470 1.00 27.54 C
ATOM 12 O2' C B 21 -34.515 -5.792 19.918 1.00 27.42 O
ATOM 13 C1' C B 21 -32.673 -7.355 19.823 1.00 26.07 C
ATOM 14 N1 C B 21 -32.779 -8.063 18.549 1.00 25.16 N
ATOM 15 C2 C B 21 -32.391 -7.394 17.395 1.00 26.48 C
ATOM 16 O2 C B 21 -31.973 -6.239 17.500 1.00 27.72 O
ATOM 17 N3 C B 21 -32.478 -8.016 16.199 1.00 27.81 N
ATOM 18 C4 C B 21 -32.935 -9.267 16.135 1.00 27.53 C
ATOM 19 N4 C B 21 -33.017 -9.841 14.929 1.00 26.81 N
ATOM 20 C5 C B 21 -33.334 -9.984 17.306 1.00 24.77 C
ATOM 21 C6 C B 21 -33.241 -9.346 18.482 1.00 24.47 C
ATOM 22 P U B 22 -33.094 -4.735 23.451 1.00 37.15 P
ATOM 23 OP1 U B 22 -33.248 -5.712 24.566 1.00 34.26 O
ATOM 24 OP2 U B 22 -34.161 -3.730 23.190 1.00 38.19 O
ATOM 25 O5' U B 22 -31.707 -3.985 23.653 1.00 33.06 O
TER
ATOM 2 P U A 22 -33.094 -4.735 23.451 1.00 37.15 P
ATOM 3 OP1 U A 22 -33.248 -5.712 24.566 1.00 34.26 O
ATOM 4 OP2 U A 22 -34.161 -3.730 23.190 1.00 38.19 O
ATOM 5 O5' U A 22 -31.707 -3.985 23.653 1.00 33.06 O
ATOM 6 C5' U A 22 -30.634 -4.634 24.315 1.00 34.30 C
ATOM 7 C4' U A 22 -29.340 -3.937 24.000 1.00 34.98 C
ATOM 8 O4' U A 22 -29.098 -4.034 22.570 1.00 37.33 O
ATOM 9 C3' U A 22 -29.310 -2.449 24.327 1.00 34.87 C
ATOM 10 O3' U A 22 -27.998 -2.076 24.688 1.00 32.46 O
ATOM 11 C2' U A 22 -29.672 -1.798 23.003 1.00 36.03 C
ATOM 12 O2' U A 22 -29.119 -0.505 22.890 1.00 35.22 O
ATOM 13 C1' U A 22 -28.999 -2.739 22.011 1.00 37.21 C
ATOM 14 N1 U A 22 -29.678 -2.748 20.709 1.00 37.80 N
ATOM 15 C2 U A 22 -29.131 -1.993 19.693 1.00 39.20 C
ATOM 16 O2 U A 22 -28.134 -1.308 19.832 1.00 41.47 O
ATOM 17 N3 U A 22 -29.796 -2.060 18.503 1.00 41.33 N
ATOM 18 C4 U A 22 -30.935 -2.785 18.230 1.00 42.63 C
ATOM 19 O4 U A 22 -31.417 -2.745 17.093 1.00 44.85 O
ATOM 20 C5 U A 22 -31.449 -3.533 19.340 1.00 40.79 C
ATOM 21 C6 U A 22 -30.815 -3.487 20.511 1.00 38.58 C
ATOM 22 P C A 23 -27.660 -1.840 26.230 1.00 32.43 P
ATOM 23 OP1 C A 23 -28.566 -0.760 26.701 1.00 32.99 O
ATOM 24 OP2 C A 23 -26.192 -1.693 26.380 1.00 29.27 O
ATOM 25 O5' C A 23 -28.116 -3.208 26.907 1.00 29.48 O
TER
ATOM 1 O3' C B 20 -33.811 -12.155 22.581 1.00 23.89 O
ATOM 2 P C B 21 -34.916 -11.006 22.370 1.00 23.00 P
ATOM 3 OP1 C B 21 -35.456 -10.727 23.724 1.00 23.95 O
ATOM 4 OP2 C B 21 -35.844 -11.383 21.278 1.00 23.50 O
ATOM 5 O5' C B 21 -34.088 -9.743 21.871 1.00 22.50 O
ATOM 6 C5' C B 21 -33.046 -9.211 22.674 1.00 25.90 C
ATOM 7 C4' C B 21 -32.532 -7.929 22.081 1.00 27.66 C
ATOM 8 O4' C B 21 -32.025 -8.197 20.745 1.00 26.61 O
ATOM 9 C3' C B 21 -33.564 -6.819 21.920 1.00 29.37 C
ATOM 10 O3' C B 21 -32.904 -5.563 22.084 1.00 34.11 O
ATOM 11 C2' C B 21 -34.000 -6.984 20.470 1.00 27.54 C
ATOM 12 O2' C B 21 -34.515 -5.792 19.918 1.00 27.42 O
ATOM 13 C1' C B 21 -32.673 -7.355 19.823 1.00 26.07 C
ATOM 14 N1 C B 21 -32.779 -8.063 18.549 1.00 25.16 N
ATOM 15 C2 C B 21 -32.391 -7.394 17.395 1.00 26.48 C
ATOM 16 O2 C B 21 -31.973 -6.239 17.500 1.00 27.72 O
ATOM 17 N3 C B 21 -32.478 -8.016 16.199 1.00 27.81 N
ATOM 18 C4 C B 21 -32.935 -9.267 16.135 1.00 27.53 C
ATOM 19 N4 C B 21 -33.017 -9.841 14.929 1.00 26.81 N
ATOM 20 C5 C B 21 -33.334 -9.984 17.306 1.00 24.77 C
ATOM 21 C6 C B 21 -33.241 -9.346 18.482 1.00 24.47 C
ATOM 22 P U B 22 -33.094 -4.735 23.451 1.00 37.15 P
ATOM 23 OP1 U B 22 -33.248 -5.712 24.566 1.00 34.26 O
ATOM 24 OP2 U B 22 -34.161 -3.730 23.190 1.00 38.19 O
ATOM 25 O5' U B 22 -31.707 -3.985 23.653 1.00 33.06 O
TER
Atoms:
C4: (-30.935,-2.785,18.230)
N3: (-29.796,-2.060,18.503)
OP1: (-33.248,-5.712,24.566)
OP2: (-34.161,-3.730,23.190)
C2: (-29.131,-1.993,19.693)
C1': (-28.999,-2.739,22.011)
C3': (-29.310,-2.449,24.327)
O5': (-31.707,-3.985,23.653)
O4': (-29.098,-4.034,22.570)
C5': (-30.634,-4.634,24.315)
P: (-33.094,-4.735,23.451)
C4': (-29.340,-3.937,24.000)
C2': (-29.672,-1.798,23.003)
O2': (-29.119,-0.505,22.890)
N1: (-29.678,-2.748,20.709)
O4: (-31.417,-2.745,17.093)
O2: (-28.134,-1.308,19.832)
C6: (-30.815,-3.487,20.511)
C5: (-31.449,-3.533,19.340)
O3': (-27.998,-2.076,24.688)
N3: (-29.796,-2.060,18.503)
OP1: (-33.248,-5.712,24.566)
OP2: (-34.161,-3.730,23.190)
C2: (-29.131,-1.993,19.693)
C1': (-28.999,-2.739,22.011)
C3': (-29.310,-2.449,24.327)
O5': (-31.707,-3.985,23.653)
O4': (-29.098,-4.034,22.570)
C5': (-30.634,-4.634,24.315)
P: (-33.094,-4.735,23.451)
C4': (-29.340,-3.937,24.000)
C2': (-29.672,-1.798,23.003)
O2': (-29.119,-0.505,22.890)
N1: (-29.678,-2.748,20.709)
O4: (-31.417,-2.745,17.093)
O2: (-28.134,-1.308,19.832)
C6: (-30.815,-3.487,20.511)
C5: (-31.449,-3.533,19.340)
O3': (-27.998,-2.076,24.688)
C2: (-32.391,-7.394,17.395)
OP1: (-35.456,-10.727,23.724)
OP2: (-35.844,-11.383,21.278)
C4: (-32.935,-9.267,16.135)
O5': (-34.088,-9.743,21.871)
C3': (-33.564,-6.819,21.920)
C1': (-32.673,-7.355,19.823)
O4': (-32.025,-8.197,20.745)
C5': (-33.046,-9.211,22.674)
P: (-34.916,-11.006,22.370)
O2: (-31.973,-6.239,17.500)
C4': (-32.532,-7.929,22.081)
C2': (-34.000,-6.984,20.470)
O2': (-34.515,-5.792,19.918)
N1: (-32.779,-8.063,18.549)
N3: (-32.478,-8.016,16.199)
N4: (-33.017,-9.841,14.929)
C6: (-33.241,-9.346,18.482)
C5: (-33.334,-9.984,17.306)
O3': (-32.904,-5.563,22.084)
OP1: (-35.456,-10.727,23.724)
OP2: (-35.844,-11.383,21.278)
C4: (-32.935,-9.267,16.135)
O5': (-34.088,-9.743,21.871)
C3': (-33.564,-6.819,21.920)
C1': (-32.673,-7.355,19.823)
O4': (-32.025,-8.197,20.745)
C5': (-33.046,-9.211,22.674)
P: (-34.916,-11.006,22.370)
O2: (-31.973,-6.239,17.500)
C4': (-32.532,-7.929,22.081)
C2': (-34.000,-6.984,20.470)
O2': (-34.515,-5.792,19.918)
N1: (-32.779,-8.063,18.549)
N3: (-32.478,-8.016,16.199)
N4: (-33.017,-9.841,14.929)
C6: (-33.241,-9.346,18.482)
C5: (-33.334,-9.984,17.306)
O3': (-32.904,-5.563,22.084)
Image (generated by PyMOL):