Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5V:E60:D10
Extra
PDB:
ATOM 1 O3' U A 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 2 P U A 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 3 OP1 U A 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 4 OP2 U A 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 5 O5' U A 60 -5.715 18.563 121.167 1.00 77.46 O
ATOM 6 C5' U A 60 -6.651 19.571 121.529 1.00 80.66 C
ATOM 7 C4' U A 60 -7.660 19.786 120.426 1.00 81.60 C
ATOM 8 O4' U A 60 -7.011 20.444 119.307 1.00 81.46 O
ATOM 9 C3' U A 60 -8.209 18.473 119.881 1.00 80.60 C
ATOM 10 O3' U A 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 11 C2' U A 60 -7.421 18.176 118.604 1.00 79.27 C
ATOM 12 O2' U A 60 -8.233 17.712 117.550 1.00 94.84 O
ATOM 13 C1' U A 60 -6.936 19.569 118.203 1.00 79.19 C
ATOM 14 N1 U A 60 -5.619 19.694 117.564 1.00 79.03 N
ATOM 15 C2 U A 60 -5.580 19.589 116.186 1.00 78.66 C
ATOM 16 O2 U A 60 -6.572 19.379 115.512 1.00 78.25 O
ATOM 17 N3 U A 60 -4.340 19.743 115.625 1.00 77.86 N
ATOM 18 C4 U A 60 -3.158 19.982 116.284 1.00 77.20 C
ATOM 19 O4 U A 60 -2.118 20.096 115.634 1.00 78.09 O
ATOM 20 C5 U A 60 -3.275 20.070 117.710 1.00 76.70 C
ATOM 21 C6 U A 60 -4.474 19.923 118.287 1.00 78.85 C
ATOM 22 P A A 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 23 OP1 A A 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 24 OP2 A A 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 25 O5' A A 61 -10.952 17.420 117.983 1.00 83.96 O
TER
ATOM 1 O3' A B 9 -2.332 21.346 126.255 1.00 77.26 O
ATOM 2 P C B 10 -0.747 21.133 126.132 1.00 77.89 P
ATOM 3 OP1 C B 10 -0.378 19.960 126.965 1.00 79.93 O
ATOM 4 OP2 C B 10 -0.099 22.449 126.384 1.00 75.67 O
ATOM 5 O5' C B 10 -0.545 20.736 124.602 1.00 79.56 O
ATOM 6 C5' C B 10 -1.112 19.533 124.094 1.00 76.99 C
ATOM 7 C4' C B 10 -1.070 19.511 122.583 1.00 72.55 C
ATOM 8 O4' C B 10 -1.820 20.632 122.045 1.00 67.20 O
ATOM 9 C3' C B 10 0.294 19.657 121.926 1.00 68.74 C
ATOM 10 O3' C B 10 1.019 18.424 121.931 1.00 66.47 O
ATOM 11 C2' C B 10 -0.100 20.059 120.506 1.00 70.50 C
ATOM 12 O2' C B 10 -0.473 18.969 119.691 1.00 74.50 O
ATOM 13 C1' C B 10 -1.326 20.941 120.753 1.00 66.64 C
ATOM 14 N1 C B 10 -1.012 22.376 120.678 1.00 61.42 N
ATOM 15 C2 C B 10 -1.004 22.985 119.422 1.00 61.12 C
ATOM 16 O2 C B 10 -1.271 22.298 118.425 1.00 59.90 O
ATOM 17 N3 C B 10 -0.706 24.299 119.324 1.00 59.74 N
ATOM 18 C4 C B 10 -0.424 25.001 120.423 1.00 60.13 C
ATOM 19 N4 C B 10 -0.137 26.297 120.276 1.00 59.49 N
ATOM 20 C5 C B 10 -0.426 24.406 121.720 1.00 57.22 C
ATOM 21 C6 C B 10 -0.724 23.102 121.800 1.00 59.37 C
TER
ATOM 2 P U A 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 3 OP1 U A 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 4 OP2 U A 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 5 O5' U A 60 -5.715 18.563 121.167 1.00 77.46 O
ATOM 6 C5' U A 60 -6.651 19.571 121.529 1.00 80.66 C
ATOM 7 C4' U A 60 -7.660 19.786 120.426 1.00 81.60 C
ATOM 8 O4' U A 60 -7.011 20.444 119.307 1.00 81.46 O
ATOM 9 C3' U A 60 -8.209 18.473 119.881 1.00 80.60 C
ATOM 10 O3' U A 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 11 C2' U A 60 -7.421 18.176 118.604 1.00 79.27 C
ATOM 12 O2' U A 60 -8.233 17.712 117.550 1.00 94.84 O
ATOM 13 C1' U A 60 -6.936 19.569 118.203 1.00 79.19 C
ATOM 14 N1 U A 60 -5.619 19.694 117.564 1.00 79.03 N
ATOM 15 C2 U A 60 -5.580 19.589 116.186 1.00 78.66 C
ATOM 16 O2 U A 60 -6.572 19.379 115.512 1.00 78.25 O
ATOM 17 N3 U A 60 -4.340 19.743 115.625 1.00 77.86 N
ATOM 18 C4 U A 60 -3.158 19.982 116.284 1.00 77.20 C
ATOM 19 O4 U A 60 -2.118 20.096 115.634 1.00 78.09 O
ATOM 20 C5 U A 60 -3.275 20.070 117.710 1.00 76.70 C
ATOM 21 C6 U A 60 -4.474 19.923 118.287 1.00 78.85 C
ATOM 22 P A A 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 23 OP1 A A 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 24 OP2 A A 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 25 O5' A A 61 -10.952 17.420 117.983 1.00 83.96 O
TER
ATOM 1 O3' A B 9 -2.332 21.346 126.255 1.00 77.26 O
ATOM 2 P C B 10 -0.747 21.133 126.132 1.00 77.89 P
ATOM 3 OP1 C B 10 -0.378 19.960 126.965 1.00 79.93 O
ATOM 4 OP2 C B 10 -0.099 22.449 126.384 1.00 75.67 O
ATOM 5 O5' C B 10 -0.545 20.736 124.602 1.00 79.56 O
ATOM 6 C5' C B 10 -1.112 19.533 124.094 1.00 76.99 C
ATOM 7 C4' C B 10 -1.070 19.511 122.583 1.00 72.55 C
ATOM 8 O4' C B 10 -1.820 20.632 122.045 1.00 67.20 O
ATOM 9 C3' C B 10 0.294 19.657 121.926 1.00 68.74 C
ATOM 10 O3' C B 10 1.019 18.424 121.931 1.00 66.47 O
ATOM 11 C2' C B 10 -0.100 20.059 120.506 1.00 70.50 C
ATOM 12 O2' C B 10 -0.473 18.969 119.691 1.00 74.50 O
ATOM 13 C1' C B 10 -1.326 20.941 120.753 1.00 66.64 C
ATOM 14 N1 C B 10 -1.012 22.376 120.678 1.00 61.42 N
ATOM 15 C2 C B 10 -1.004 22.985 119.422 1.00 61.12 C
ATOM 16 O2 C B 10 -1.271 22.298 118.425 1.00 59.90 O
ATOM 17 N3 C B 10 -0.706 24.299 119.324 1.00 59.74 N
ATOM 18 C4 C B 10 -0.424 25.001 120.423 1.00 60.13 C
ATOM 19 N4 C B 10 -0.137 26.297 120.276 1.00 59.49 N
ATOM 20 C5 C B 10 -0.426 24.406 121.720 1.00 57.22 C
ATOM 21 C6 C B 10 -0.724 23.102 121.800 1.00 59.37 C
TER
Atoms:
C4: (-3.158,19.982,116.284)
N3: (-4.340,19.743,115.625)
OP1: (-4.883,18.550,123.510)
OP2: (-5.614,16.378,122.368)
C2: (-5.580,19.589,116.186)
C1': (-6.936,19.569,118.203)
C3': (-8.209,18.473,119.881)
O5': (-5.715,18.563,121.167)
O4': (-7.011,20.444,119.307)
C5': (-6.651,19.571,121.529)
P: (-4.970,17.713,122.291)
C4': (-7.660,19.786,120.426)
C2': (-7.421,18.176,118.604)
O2': (-8.233,17.712,117.550)
N1: (-5.619,19.694,117.564)
O4: (-2.118,20.096,115.634)
O2: (-6.572,19.379,115.512)
C6: (-4.474,19.923,118.287)
C5: (-3.275,20.070,117.710)
O3': (-9.639,18.374,119.915)
N3: (-4.340,19.743,115.625)
OP1: (-4.883,18.550,123.510)
OP2: (-5.614,16.378,122.368)
C2: (-5.580,19.589,116.186)
C1': (-6.936,19.569,118.203)
C3': (-8.209,18.473,119.881)
O5': (-5.715,18.563,121.167)
O4': (-7.011,20.444,119.307)
C5': (-6.651,19.571,121.529)
P: (-4.970,17.713,122.291)
C4': (-7.660,19.786,120.426)
C2': (-7.421,18.176,118.604)
O2': (-8.233,17.712,117.550)
N1: (-5.619,19.694,117.564)
O4: (-2.118,20.096,115.634)
O2: (-6.572,19.379,115.512)
C6: (-4.474,19.923,118.287)
C5: (-3.275,20.070,117.710)
O3': (-9.639,18.374,119.915)
C2: (-1.004,22.985,119.422)
OP1: (-0.378,19.960,126.965)
OP2: (-0.099,22.449,126.384)
C4: (-0.424,25.001,120.423)
O5': (-0.545,20.736,124.602)
C3': (0.294,19.657,121.926)
C1': (-1.326,20.941,120.753)
O4': (-1.820,20.632,122.045)
C5': (-1.112,19.533,124.094)
P: (-0.747,21.133,126.132)
O2: (-1.271,22.298,118.425)
C4': (-1.070,19.511,122.583)
C2': (-0.100,20.059,120.506)
O2': (-0.473,18.969,119.691)
N1: (-1.012,22.376,120.678)
N3: (-0.706,24.299,119.324)
N4: (-0.137,26.297,120.276)
C6: (-0.724,23.102,121.800)
C5: (-0.426,24.406,121.720)
O3': (1.019,18.424,121.931)
OP1: (-0.378,19.960,126.965)
OP2: (-0.099,22.449,126.384)
C4: (-0.424,25.001,120.423)
O5': (-0.545,20.736,124.602)
C3': (0.294,19.657,121.926)
C1': (-1.326,20.941,120.753)
O4': (-1.820,20.632,122.045)
C5': (-1.112,19.533,124.094)
P: (-0.747,21.133,126.132)
O2: (-1.271,22.298,118.425)
C4': (-1.070,19.511,122.583)
C2': (-0.100,20.059,120.506)
O2': (-0.473,18.969,119.691)
N1: (-1.012,22.376,120.678)
N3: (-0.706,24.299,119.324)
N4: (-0.137,26.297,120.276)
C6: (-0.724,23.102,121.800)
C5: (-0.426,24.406,121.720)
O3': (1.019,18.424,121.931)
Image (generated by PyMOL):