Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1U8D:A10:A38
Extra
PDB:
ATOM 1 O3' A A 9 21.369 11.351 7.801 1.00 13.11 O
ATOM 2 P U A 10 22.931 11.117 7.493 1.00 14.31 P
ATOM 3 OP1 U A 10 23.384 9.774 7.967 1.00 13.12 O
ATOM 4 OP2 U A 10 23.680 12.330 7.933 1.00 15.11 O
ATOM 5 O5' U A 10 22.966 11.182 5.904 1.00 12.37 O
ATOM 6 C5' U A 10 22.889 9.987 5.117 1.00 15.75 C
ATOM 7 C4' U A 10 22.394 10.314 3.715 1.00 14.54 C
ATOM 8 O4' U A 10 21.019 10.786 3.786 1.00 14.76 O
ATOM 9 C3' U A 10 23.144 11.444 3.031 1.00 15.39 C
ATOM 10 O3' U A 10 24.331 10.949 2.403 1.00 15.75 O
ATOM 11 C2' U A 10 22.114 11.959 2.027 1.00 15.07 C
ATOM 12 O2' U A 10 22.016 11.123 0.889 1.00 14.04 O
ATOM 13 C1' U A 10 20.817 11.819 2.831 1.00 14.18 C
ATOM 14 N1 U A 10 20.412 13.042 3.549 1.00 10.89 N
ATOM 15 C2 U A 10 19.972 14.094 2.797 1.00 12.58 C
ATOM 16 O2 U A 10 19.917 14.051 1.569 1.00 14.81 O
ATOM 17 N3 U A 10 19.592 15.206 3.514 1.00 12.69 N
ATOM 18 C4 U A 10 19.611 15.359 4.880 1.00 14.17 C
ATOM 19 O4 U A 10 19.271 16.439 5.374 1.00 13.94 O
ATOM 20 C5 U A 10 20.084 14.211 5.598 1.00 13.87 C
ATOM 21 C6 U A 10 20.460 13.117 4.917 1.00 13.05 C
ATOM 22 P C A 11 25.693 11.790 2.524 1.00 17.71 P
ATOM 23 OP1 C A 11 26.754 11.081 1.752 1.00 17.41 O
ATOM 24 OP2 C A 11 25.922 12.133 3.943 1.00 15.48 O
ATOM 25 O5' C A 11 25.352 13.145 1.775 1.00 15.22 O
TER
ATOM 1 O3' A B 37 16.060 17.141 13.881 1.00 17.77 O
ATOM 2 P C B 38 17.368 18.050 13.670 1.00 17.51 P
ATOM 3 OP1 C B 38 18.117 18.008 14.931 1.00 19.79 O
ATOM 4 OP2 C B 38 17.010 19.365 13.065 1.00 18.18 O
ATOM 5 O5' C B 38 18.238 17.298 12.563 1.00 17.18 O
ATOM 6 C5' C B 38 18.901 16.077 12.842 1.00 15.96 C
ATOM 7 C4' C B 38 19.332 15.446 11.543 1.00 15.86 C
ATOM 8 O4' C B 38 18.121 15.192 10.776 1.00 13.93 O
ATOM 9 C3' C B 38 20.160 16.337 10.613 1.00 15.87 C
ATOM 10 O3' C B 38 21.559 16.258 10.903 1.00 17.45 O
ATOM 11 C2' C B 38 19.874 15.668 9.269 1.00 14.61 C
ATOM 12 O2' C B 38 20.537 14.416 9.169 1.00 13.51 O
ATOM 13 C1' C B 38 18.388 15.358 9.402 1.00 14.62 C
ATOM 14 N1 C B 38 17.495 16.398 8.857 1.00 15.30 N
ATOM 15 C2 C B 38 16.863 16.150 7.629 1.00 16.59 C
ATOM 16 O2 C B 38 17.047 15.036 7.072 1.00 15.08 O
ATOM 17 N3 C B 38 16.064 17.117 7.081 1.00 15.46 N
ATOM 18 C4 C B 38 15.882 18.269 7.728 1.00 15.94 C
ATOM 19 N4 C B 38 15.106 19.193 7.161 1.00 17.55 N
ATOM 20 C5 C B 38 16.499 18.534 8.995 1.00 18.55 C
ATOM 21 C6 C B 38 17.293 17.579 9.514 1.00 17.04 C
ATOM 22 P C B 39 22.305 17.435 11.741 1.00 20.49 P
ATOM 23 OP1 C B 39 21.325 18.517 12.085 1.00 24.43 O
ATOM 24 OP2 C B 39 23.512 17.794 10.991 1.00 22.51 O
ATOM 25 O5' C B 39 22.926 16.655 12.998 1.00 23.22 O
TER
ATOM 2 P U A 10 22.931 11.117 7.493 1.00 14.31 P
ATOM 3 OP1 U A 10 23.384 9.774 7.967 1.00 13.12 O
ATOM 4 OP2 U A 10 23.680 12.330 7.933 1.00 15.11 O
ATOM 5 O5' U A 10 22.966 11.182 5.904 1.00 12.37 O
ATOM 6 C5' U A 10 22.889 9.987 5.117 1.00 15.75 C
ATOM 7 C4' U A 10 22.394 10.314 3.715 1.00 14.54 C
ATOM 8 O4' U A 10 21.019 10.786 3.786 1.00 14.76 O
ATOM 9 C3' U A 10 23.144 11.444 3.031 1.00 15.39 C
ATOM 10 O3' U A 10 24.331 10.949 2.403 1.00 15.75 O
ATOM 11 C2' U A 10 22.114 11.959 2.027 1.00 15.07 C
ATOM 12 O2' U A 10 22.016 11.123 0.889 1.00 14.04 O
ATOM 13 C1' U A 10 20.817 11.819 2.831 1.00 14.18 C
ATOM 14 N1 U A 10 20.412 13.042 3.549 1.00 10.89 N
ATOM 15 C2 U A 10 19.972 14.094 2.797 1.00 12.58 C
ATOM 16 O2 U A 10 19.917 14.051 1.569 1.00 14.81 O
ATOM 17 N3 U A 10 19.592 15.206 3.514 1.00 12.69 N
ATOM 18 C4 U A 10 19.611 15.359 4.880 1.00 14.17 C
ATOM 19 O4 U A 10 19.271 16.439 5.374 1.00 13.94 O
ATOM 20 C5 U A 10 20.084 14.211 5.598 1.00 13.87 C
ATOM 21 C6 U A 10 20.460 13.117 4.917 1.00 13.05 C
ATOM 22 P C A 11 25.693 11.790 2.524 1.00 17.71 P
ATOM 23 OP1 C A 11 26.754 11.081 1.752 1.00 17.41 O
ATOM 24 OP2 C A 11 25.922 12.133 3.943 1.00 15.48 O
ATOM 25 O5' C A 11 25.352 13.145 1.775 1.00 15.22 O
TER
ATOM 1 O3' A B 37 16.060 17.141 13.881 1.00 17.77 O
ATOM 2 P C B 38 17.368 18.050 13.670 1.00 17.51 P
ATOM 3 OP1 C B 38 18.117 18.008 14.931 1.00 19.79 O
ATOM 4 OP2 C B 38 17.010 19.365 13.065 1.00 18.18 O
ATOM 5 O5' C B 38 18.238 17.298 12.563 1.00 17.18 O
ATOM 6 C5' C B 38 18.901 16.077 12.842 1.00 15.96 C
ATOM 7 C4' C B 38 19.332 15.446 11.543 1.00 15.86 C
ATOM 8 O4' C B 38 18.121 15.192 10.776 1.00 13.93 O
ATOM 9 C3' C B 38 20.160 16.337 10.613 1.00 15.87 C
ATOM 10 O3' C B 38 21.559 16.258 10.903 1.00 17.45 O
ATOM 11 C2' C B 38 19.874 15.668 9.269 1.00 14.61 C
ATOM 12 O2' C B 38 20.537 14.416 9.169 1.00 13.51 O
ATOM 13 C1' C B 38 18.388 15.358 9.402 1.00 14.62 C
ATOM 14 N1 C B 38 17.495 16.398 8.857 1.00 15.30 N
ATOM 15 C2 C B 38 16.863 16.150 7.629 1.00 16.59 C
ATOM 16 O2 C B 38 17.047 15.036 7.072 1.00 15.08 O
ATOM 17 N3 C B 38 16.064 17.117 7.081 1.00 15.46 N
ATOM 18 C4 C B 38 15.882 18.269 7.728 1.00 15.94 C
ATOM 19 N4 C B 38 15.106 19.193 7.161 1.00 17.55 N
ATOM 20 C5 C B 38 16.499 18.534 8.995 1.00 18.55 C
ATOM 21 C6 C B 38 17.293 17.579 9.514 1.00 17.04 C
ATOM 22 P C B 39 22.305 17.435 11.741 1.00 20.49 P
ATOM 23 OP1 C B 39 21.325 18.517 12.085 1.00 24.43 O
ATOM 24 OP2 C B 39 23.512 17.794 10.991 1.00 22.51 O
ATOM 25 O5' C B 39 22.926 16.655 12.998 1.00 23.22 O
TER
Atoms:
C4: (19.611,15.359,4.880)
N3: (19.592,15.206,3.514)
OP1: (23.384,9.774,7.967)
OP2: (23.680,12.330,7.933)
C2: (19.972,14.094,2.797)
C1': (20.817,11.819,2.831)
C3': (23.144,11.444,3.031)
O5': (22.966,11.182,5.904)
O4': (21.019,10.786,3.786)
C5': (22.889,9.987,5.117)
P: (22.931,11.117,7.493)
C4': (22.394,10.314,3.715)
C2': (22.114,11.959,2.027)
O2': (22.016,11.123,0.889)
N1: (20.412,13.042,3.549)
O4: (19.271,16.439,5.374)
O2: (19.917,14.051,1.569)
C6: (20.460,13.117,4.917)
C5: (20.084,14.211,5.598)
O3': (24.331,10.949,2.403)
N3: (19.592,15.206,3.514)
OP1: (23.384,9.774,7.967)
OP2: (23.680,12.330,7.933)
C2: (19.972,14.094,2.797)
C1': (20.817,11.819,2.831)
C3': (23.144,11.444,3.031)
O5': (22.966,11.182,5.904)
O4': (21.019,10.786,3.786)
C5': (22.889,9.987,5.117)
P: (22.931,11.117,7.493)
C4': (22.394,10.314,3.715)
C2': (22.114,11.959,2.027)
O2': (22.016,11.123,0.889)
N1: (20.412,13.042,3.549)
O4: (19.271,16.439,5.374)
O2: (19.917,14.051,1.569)
C6: (20.460,13.117,4.917)
C5: (20.084,14.211,5.598)
O3': (24.331,10.949,2.403)
C2: (16.863,16.150,7.629)
OP1: (18.117,18.008,14.931)
OP2: (17.010,19.365,13.065)
C4: (15.882,18.269,7.728)
O5': (18.238,17.298,12.563)
C3': (20.160,16.337,10.613)
C1': (18.388,15.358,9.402)
O4': (18.121,15.192,10.776)
C5': (18.901,16.077,12.842)
P: (17.368,18.050,13.670)
O2: (17.047,15.036,7.072)
C4': (19.332,15.446,11.543)
C2': (19.874,15.668,9.269)
O2': (20.537,14.416,9.169)
N1: (17.495,16.398,8.857)
N3: (16.064,17.117,7.081)
N4: (15.106,19.193,7.161)
C6: (17.293,17.579,9.514)
C5: (16.499,18.534,8.995)
O3': (21.559,16.258,10.903)
OP1: (18.117,18.008,14.931)
OP2: (17.010,19.365,13.065)
C4: (15.882,18.269,7.728)
O5': (18.238,17.298,12.563)
C3': (20.160,16.337,10.613)
C1': (18.388,15.358,9.402)
O4': (18.121,15.192,10.776)
C5': (18.901,16.077,12.842)
P: (17.368,18.050,13.670)
O2: (17.047,15.036,7.072)
C4': (19.332,15.446,11.543)
C2': (19.874,15.668,9.269)
O2': (20.537,14.416,9.169)
N1: (17.495,16.398,8.857)
N3: (16.064,17.117,7.081)
N4: (15.106,19.193,7.161)
C6: (17.293,17.579,9.514)
C5: (16.499,18.534,8.995)
O3': (21.559,16.258,10.903)
Image (generated by PyMOL):