Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:01087:01085
Extra
PDB:
ATOM 1 O3' C A1086 49.684 101.362 115.003 1.00 41.29 O
ATOM 2 P U A1087 48.466 101.102 116.021 1.00 42.75 P
ATOM 3 OP1 U A1087 49.004 101.102 117.405 1.00 42.83 O
ATOM 4 OP2 U A1087 47.705 99.924 115.527 1.00 42.02 O
ATOM 5 O5' U A1087 47.552 102.388 115.871 1.00 40.88 O
ATOM 6 C5' U A1087 48.066 103.681 116.186 1.00 41.17 C
ATOM 7 C4' U A1087 46.987 104.712 116.030 1.00 41.93 C
ATOM 8 O4' U A1087 46.652 104.847 114.617 1.00 42.29 O
ATOM 9 C3' U A1087 45.684 104.368 116.745 1.00 41.69 C
ATOM 10 O3' U A1087 45.080 105.563 117.215 1.00 43.82 O
ATOM 11 C2' U A1087 44.846 103.774 115.620 1.00 41.67 C
ATOM 12 O2' U A1087 43.461 103.857 115.861 1.00 42.03 O
ATOM 13 C1' U A1087 45.262 104.672 114.461 1.00 41.85 C
ATOM 14 N1 U A1087 44.978 104.212 113.092 1.00 41.36 N
ATOM 15 C2 U A1087 44.423 105.142 112.224 1.00 41.90 C
ATOM 16 O2 U A1087 44.170 106.291 112.555 1.00 42.52 O
ATOM 17 N3 U A1087 44.174 104.680 110.957 1.00 40.77 N
ATOM 18 C4 U A1087 44.410 103.415 110.473 1.00 41.70 C
ATOM 19 O4 U A1087 44.112 103.152 109.303 1.00 42.29 O
ATOM 20 C5 U A1087 44.985 102.507 111.427 1.00 41.85 C
ATOM 21 C6 U A1087 45.244 102.928 112.673 1.00 41.56 C
ATOM 22 P C A1088 45.092 105.891 118.786 1.00 48.54 P
ATOM 23 OP1 C A1088 44.466 107.230 118.968 1.00 46.51 O
ATOM 24 OP2 C A1088 46.472 105.650 119.296 1.00 47.72 O
ATOM 25 O5' C A1088 44.140 104.772 119.414 1.00 47.87 O
TER
ATOM 1 O3' U B1084 42.488 94.106 114.642 1.00 40.79 O
ATOM 2 P C B1085 43.862 94.675 115.246 1.00 43.05 P
ATOM 3 OP1 C B1085 44.898 93.673 114.883 1.00 42.05 O
ATOM 4 OP2 C B1085 43.666 95.039 116.671 1.00 43.39 O
ATOM 5 O5' C B1085 44.114 96.016 114.424 1.00 42.01 O
ATOM 6 C5' C B1085 44.080 96.010 112.986 1.00 43.83 C
ATOM 7 C4' C B1085 44.108 97.423 112.449 1.00 44.87 C
ATOM 8 O4' C B1085 42.961 98.144 112.978 1.00 45.00 O
ATOM 9 C3' C B1085 45.335 98.259 112.798 1.00 44.45 C
ATOM 10 O3' C B1085 45.647 99.117 111.700 1.00 43.50 O
ATOM 11 C2' C B1085 44.871 99.032 114.032 1.00 44.92 C
ATOM 12 O2' C B1085 45.552 100.254 114.242 1.00 45.95 O
ATOM 13 C1' C B1085 43.397 99.271 113.712 1.00 44.48 C
ATOM 14 N1 C B1085 42.532 99.384 114.896 1.00 42.77 N
ATOM 15 C2 C B1085 41.819 100.577 115.118 1.00 42.99 C
ATOM 16 O2 C B1085 41.974 101.537 114.345 1.00 41.59 O
ATOM 17 N3 C B1085 40.980 100.651 116.173 1.00 44.37 N
ATOM 18 C4 C B1085 40.846 99.606 116.997 1.00 45.01 C
ATOM 19 N4 C B1085 39.993 99.719 118.013 1.00 46.66 N
ATOM 20 C5 C B1085 41.579 98.398 116.811 1.00 44.66 C
ATOM 21 C6 C B1085 42.403 98.332 115.761 1.00 44.18 C
ATOM 22 P C B1086 47.124 99.077 111.051 1.00 44.97 P
ATOM 23 OP1 C B1086 47.117 99.869 109.794 1.00 45.84 O
ATOM 24 OP2 C B1086 47.585 97.667 111.018 1.00 43.89 O
ATOM 25 O5' C B1086 47.999 99.882 112.104 1.00 43.27 O
TER
ATOM 2 P U A1087 48.466 101.102 116.021 1.00 42.75 P
ATOM 3 OP1 U A1087 49.004 101.102 117.405 1.00 42.83 O
ATOM 4 OP2 U A1087 47.705 99.924 115.527 1.00 42.02 O
ATOM 5 O5' U A1087 47.552 102.388 115.871 1.00 40.88 O
ATOM 6 C5' U A1087 48.066 103.681 116.186 1.00 41.17 C
ATOM 7 C4' U A1087 46.987 104.712 116.030 1.00 41.93 C
ATOM 8 O4' U A1087 46.652 104.847 114.617 1.00 42.29 O
ATOM 9 C3' U A1087 45.684 104.368 116.745 1.00 41.69 C
ATOM 10 O3' U A1087 45.080 105.563 117.215 1.00 43.82 O
ATOM 11 C2' U A1087 44.846 103.774 115.620 1.00 41.67 C
ATOM 12 O2' U A1087 43.461 103.857 115.861 1.00 42.03 O
ATOM 13 C1' U A1087 45.262 104.672 114.461 1.00 41.85 C
ATOM 14 N1 U A1087 44.978 104.212 113.092 1.00 41.36 N
ATOM 15 C2 U A1087 44.423 105.142 112.224 1.00 41.90 C
ATOM 16 O2 U A1087 44.170 106.291 112.555 1.00 42.52 O
ATOM 17 N3 U A1087 44.174 104.680 110.957 1.00 40.77 N
ATOM 18 C4 U A1087 44.410 103.415 110.473 1.00 41.70 C
ATOM 19 O4 U A1087 44.112 103.152 109.303 1.00 42.29 O
ATOM 20 C5 U A1087 44.985 102.507 111.427 1.00 41.85 C
ATOM 21 C6 U A1087 45.244 102.928 112.673 1.00 41.56 C
ATOM 22 P C A1088 45.092 105.891 118.786 1.00 48.54 P
ATOM 23 OP1 C A1088 44.466 107.230 118.968 1.00 46.51 O
ATOM 24 OP2 C A1088 46.472 105.650 119.296 1.00 47.72 O
ATOM 25 O5' C A1088 44.140 104.772 119.414 1.00 47.87 O
TER
ATOM 1 O3' U B1084 42.488 94.106 114.642 1.00 40.79 O
ATOM 2 P C B1085 43.862 94.675 115.246 1.00 43.05 P
ATOM 3 OP1 C B1085 44.898 93.673 114.883 1.00 42.05 O
ATOM 4 OP2 C B1085 43.666 95.039 116.671 1.00 43.39 O
ATOM 5 O5' C B1085 44.114 96.016 114.424 1.00 42.01 O
ATOM 6 C5' C B1085 44.080 96.010 112.986 1.00 43.83 C
ATOM 7 C4' C B1085 44.108 97.423 112.449 1.00 44.87 C
ATOM 8 O4' C B1085 42.961 98.144 112.978 1.00 45.00 O
ATOM 9 C3' C B1085 45.335 98.259 112.798 1.00 44.45 C
ATOM 10 O3' C B1085 45.647 99.117 111.700 1.00 43.50 O
ATOM 11 C2' C B1085 44.871 99.032 114.032 1.00 44.92 C
ATOM 12 O2' C B1085 45.552 100.254 114.242 1.00 45.95 O
ATOM 13 C1' C B1085 43.397 99.271 113.712 1.00 44.48 C
ATOM 14 N1 C B1085 42.532 99.384 114.896 1.00 42.77 N
ATOM 15 C2 C B1085 41.819 100.577 115.118 1.00 42.99 C
ATOM 16 O2 C B1085 41.974 101.537 114.345 1.00 41.59 O
ATOM 17 N3 C B1085 40.980 100.651 116.173 1.00 44.37 N
ATOM 18 C4 C B1085 40.846 99.606 116.997 1.00 45.01 C
ATOM 19 N4 C B1085 39.993 99.719 118.013 1.00 46.66 N
ATOM 20 C5 C B1085 41.579 98.398 116.811 1.00 44.66 C
ATOM 21 C6 C B1085 42.403 98.332 115.761 1.00 44.18 C
ATOM 22 P C B1086 47.124 99.077 111.051 1.00 44.97 P
ATOM 23 OP1 C B1086 47.117 99.869 109.794 1.00 45.84 O
ATOM 24 OP2 C B1086 47.585 97.667 111.018 1.00 43.89 O
ATOM 25 O5' C B1086 47.999 99.882 112.104 1.00 43.27 O
TER
Atoms:
C4: (44.410,103.415,110.473)
N3: (44.174,104.680,110.957)
OP1: (49.004,101.102,117.405)
OP2: (47.705,99.924,115.527)
C2: (44.423,105.142,112.224)
C1': (45.262,104.672,114.461)
C3': (45.684,104.368,116.745)
O5': (47.552,102.388,115.871)
O4': (46.652,104.847,114.617)
C5': (48.066,103.681,116.186)
P: (48.466,101.102,116.021)
C4': (46.987,104.712,116.030)
C2': (44.846,103.774,115.620)
O2': (43.461,103.857,115.861)
N1: (44.978,104.212,113.092)
O4: (44.112,103.152,109.303)
O2: (44.170,106.291,112.555)
C6: (45.244,102.928,112.673)
C5: (44.985,102.507,111.427)
O3': (45.080,105.563,117.215)
N3: (44.174,104.680,110.957)
OP1: (49.004,101.102,117.405)
OP2: (47.705,99.924,115.527)
C2: (44.423,105.142,112.224)
C1': (45.262,104.672,114.461)
C3': (45.684,104.368,116.745)
O5': (47.552,102.388,115.871)
O4': (46.652,104.847,114.617)
C5': (48.066,103.681,116.186)
P: (48.466,101.102,116.021)
C4': (46.987,104.712,116.030)
C2': (44.846,103.774,115.620)
O2': (43.461,103.857,115.861)
N1: (44.978,104.212,113.092)
O4: (44.112,103.152,109.303)
O2: (44.170,106.291,112.555)
C6: (45.244,102.928,112.673)
C5: (44.985,102.507,111.427)
O3': (45.080,105.563,117.215)
C2: (41.819,100.577,115.118)
OP1: (44.898,93.673,114.883)
OP2: (43.666,95.039,116.671)
C4: (40.846,99.606,116.997)
O5': (44.114,96.016,114.424)
C3': (45.335,98.259,112.798)
C1': (43.397,99.271,113.712)
O4': (42.961,98.144,112.978)
C5': (44.080,96.010,112.986)
P: (43.862,94.675,115.246)
O2: (41.974,101.537,114.345)
C4': (44.108,97.423,112.449)
C2': (44.871,99.032,114.032)
O2': (45.552,100.254,114.242)
N1: (42.532,99.384,114.896)
N3: (40.980,100.651,116.173)
N4: (39.993,99.719,118.013)
C6: (42.403,98.332,115.761)
C5: (41.579,98.398,116.811)
O3': (45.647,99.117,111.700)
OP1: (44.898,93.673,114.883)
OP2: (43.666,95.039,116.671)
C4: (40.846,99.606,116.997)
O5': (44.114,96.016,114.424)
C3': (45.335,98.259,112.798)
C1': (43.397,99.271,113.712)
O4': (42.961,98.144,112.978)
C5': (44.080,96.010,112.986)
P: (43.862,94.675,115.246)
O2: (41.974,101.537,114.345)
C4': (44.108,97.423,112.449)
C2': (44.871,99.032,114.032)
O2': (45.552,100.254,114.242)
N1: (42.532,99.384,114.896)
N3: (40.980,100.651,116.173)
N4: (39.993,99.719,118.013)
C6: (42.403,98.332,115.761)
C5: (41.579,98.398,116.811)
O3': (45.647,99.117,111.700)
Image (generated by PyMOL):