Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01087:01085
Extra
PDB:
ATOM 1 O3' C A1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 2 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 3 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 4 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 5 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
ATOM 6 C5' U A1087 48.009 103.702 116.235 1.00 47.86 C
ATOM 7 C4' U A1087 46.934 104.748 116.074 1.00 48.98 C
ATOM 8 O4' U A1087 46.650 104.950 114.663 1.00 49.34 O
ATOM 9 C3' U A1087 45.593 104.476 116.752 1.00 49.57 C
ATOM 10 O3' U A1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 11 C2' U A1087 44.730 103.995 115.591 1.00 50.00 C
ATOM 12 O2' U A1087 43.354 104.232 115.789 1.00 50.81 O
ATOM 13 C1' U A1087 45.257 104.866 114.454 1.00 50.04 C
ATOM 14 N1 U A1087 45.010 104.371 113.092 1.00 50.08 N
ATOM 15 C2 U A1087 44.458 105.261 112.187 1.00 51.43 C
ATOM 16 O2 U A1087 44.167 106.410 112.478 1.00 52.80 O
ATOM 17 N3 U A1087 44.256 104.756 110.925 1.00 51.39 N
ATOM 18 C4 U A1087 44.540 103.478 110.485 1.00 51.85 C
ATOM 19 O4 U A1087 44.332 103.184 109.305 1.00 51.19 O
ATOM 20 C5 U A1087 45.104 102.615 111.482 1.00 51.46 C
ATOM 21 C6 U A1087 45.315 103.080 112.719 1.00 50.50 C
ATOM 22 P C A1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 23 OP1 C A1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 24 OP2 C A1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 25 O5' C A1088 44.202 104.946 119.495 1.00 57.09 O
TER
ATOM 1 O3' U B1084 42.461 94.270 114.657 1.00 46.07 O
ATOM 2 P C B1085 43.837 94.856 115.229 1.00 48.35 P
ATOM 3 OP1 C B1085 44.888 93.900 114.788 1.00 46.08 O
ATOM 4 OP2 C B1085 43.679 95.157 116.677 1.00 46.82 O
ATOM 5 O5' C B1085 44.010 96.231 114.443 1.00 47.24 O
ATOM 6 C5' C B1085 43.998 96.252 113.003 1.00 48.34 C
ATOM 7 C4' C B1085 44.079 97.669 112.492 1.00 47.68 C
ATOM 8 O4' C B1085 42.940 98.401 113.013 1.00 47.62 O
ATOM 9 C3' C B1085 45.319 98.462 112.889 1.00 47.49 C
ATOM 10 O3' C B1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 11 C2' C B1085 44.844 99.209 114.132 1.00 47.81 C
ATOM 12 O2' C B1085 45.543 100.412 114.368 1.00 49.07 O
ATOM 13 C1' C B1085 43.387 99.498 113.780 1.00 47.51 C
ATOM 14 N1 C B1085 42.492 99.626 114.942 1.00 45.70 N
ATOM 15 C2 C B1085 41.763 100.809 115.112 1.00 45.14 C
ATOM 16 O2 C B1085 41.919 101.737 114.312 1.00 44.45 O
ATOM 17 N3 C B1085 40.911 100.914 116.150 1.00 47.06 N
ATOM 18 C4 C B1085 40.780 99.904 117.012 1.00 48.14 C
ATOM 19 N4 C B1085 39.924 100.057 118.025 1.00 49.35 N
ATOM 20 C5 C B1085 41.522 98.695 116.875 1.00 47.58 C
ATOM 21 C6 C B1085 42.358 98.600 115.836 1.00 46.77 C
ATOM 22 P C B1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 23 OP1 C B1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 24 OP2 C B1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 25 O5' C B1086 48.037 100.207 111.888 1.00 46.14 O
TER
ATOM 2 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 3 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 4 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 5 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
ATOM 6 C5' U A1087 48.009 103.702 116.235 1.00 47.86 C
ATOM 7 C4' U A1087 46.934 104.748 116.074 1.00 48.98 C
ATOM 8 O4' U A1087 46.650 104.950 114.663 1.00 49.34 O
ATOM 9 C3' U A1087 45.593 104.476 116.752 1.00 49.57 C
ATOM 10 O3' U A1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 11 C2' U A1087 44.730 103.995 115.591 1.00 50.00 C
ATOM 12 O2' U A1087 43.354 104.232 115.789 1.00 50.81 O
ATOM 13 C1' U A1087 45.257 104.866 114.454 1.00 50.04 C
ATOM 14 N1 U A1087 45.010 104.371 113.092 1.00 50.08 N
ATOM 15 C2 U A1087 44.458 105.261 112.187 1.00 51.43 C
ATOM 16 O2 U A1087 44.167 106.410 112.478 1.00 52.80 O
ATOM 17 N3 U A1087 44.256 104.756 110.925 1.00 51.39 N
ATOM 18 C4 U A1087 44.540 103.478 110.485 1.00 51.85 C
ATOM 19 O4 U A1087 44.332 103.184 109.305 1.00 51.19 O
ATOM 20 C5 U A1087 45.104 102.615 111.482 1.00 51.46 C
ATOM 21 C6 U A1087 45.315 103.080 112.719 1.00 50.50 C
ATOM 22 P C A1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 23 OP1 C A1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 24 OP2 C A1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 25 O5' C A1088 44.202 104.946 119.495 1.00 57.09 O
TER
ATOM 1 O3' U B1084 42.461 94.270 114.657 1.00 46.07 O
ATOM 2 P C B1085 43.837 94.856 115.229 1.00 48.35 P
ATOM 3 OP1 C B1085 44.888 93.900 114.788 1.00 46.08 O
ATOM 4 OP2 C B1085 43.679 95.157 116.677 1.00 46.82 O
ATOM 5 O5' C B1085 44.010 96.231 114.443 1.00 47.24 O
ATOM 6 C5' C B1085 43.998 96.252 113.003 1.00 48.34 C
ATOM 7 C4' C B1085 44.079 97.669 112.492 1.00 47.68 C
ATOM 8 O4' C B1085 42.940 98.401 113.013 1.00 47.62 O
ATOM 9 C3' C B1085 45.319 98.462 112.889 1.00 47.49 C
ATOM 10 O3' C B1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 11 C2' C B1085 44.844 99.209 114.132 1.00 47.81 C
ATOM 12 O2' C B1085 45.543 100.412 114.368 1.00 49.07 O
ATOM 13 C1' C B1085 43.387 99.498 113.780 1.00 47.51 C
ATOM 14 N1 C B1085 42.492 99.626 114.942 1.00 45.70 N
ATOM 15 C2 C B1085 41.763 100.809 115.112 1.00 45.14 C
ATOM 16 O2 C B1085 41.919 101.737 114.312 1.00 44.45 O
ATOM 17 N3 C B1085 40.911 100.914 116.150 1.00 47.06 N
ATOM 18 C4 C B1085 40.780 99.904 117.012 1.00 48.14 C
ATOM 19 N4 C B1085 39.924 100.057 118.025 1.00 49.35 N
ATOM 20 C5 C B1085 41.522 98.695 116.875 1.00 47.58 C
ATOM 21 C6 C B1085 42.358 98.600 115.836 1.00 46.77 C
ATOM 22 P C B1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 23 OP1 C B1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 24 OP2 C B1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 25 O5' C B1086 48.037 100.207 111.888 1.00 46.14 O
TER
Atoms:
C4: (44.540,103.478,110.485)
N3: (44.256,104.756,110.925)
OP1: (49.032,101.088,117.380)
OP2: (47.769,99.926,115.472)
C2: (44.458,105.261,112.187)
C1': (45.257,104.866,114.454)
C3': (45.593,104.476,116.752)
O5': (47.508,102.398,115.912)
O4': (46.650,104.950,114.663)
C5': (48.009,103.702,116.235)
P: (48.463,101.128,116.009)
C4': (46.934,104.748,116.074)
C2': (44.730,103.995,115.591)
O2': (43.354,104.232,115.789)
N1: (45.010,104.371,113.092)
O4: (44.332,103.184,109.305)
O2: (44.167,106.410,112.478)
C6: (45.315,103.080,112.719)
C5: (45.104,102.615,111.482)
O3': (45.073,105.698,117.252)
N3: (44.256,104.756,110.925)
OP1: (49.032,101.088,117.380)
OP2: (47.769,99.926,115.472)
C2: (44.458,105.261,112.187)
C1': (45.257,104.866,114.454)
C3': (45.593,104.476,116.752)
O5': (47.508,102.398,115.912)
O4': (46.650,104.950,114.663)
C5': (48.009,103.702,116.235)
P: (48.463,101.128,116.009)
C4': (46.934,104.748,116.074)
C2': (44.730,103.995,115.591)
O2': (43.354,104.232,115.789)
N1: (45.010,104.371,113.092)
O4: (44.332,103.184,109.305)
O2: (44.167,106.410,112.478)
C6: (45.315,103.080,112.719)
C5: (45.104,102.615,111.482)
O3': (45.073,105.698,117.252)
C2: (41.763,100.809,115.112)
OP1: (44.888,93.900,114.788)
OP2: (43.679,95.157,116.677)
C4: (40.780,99.904,117.012)
O5': (44.010,96.231,114.443)
C3': (45.319,98.462,112.889)
C1': (43.387,99.498,113.780)
O4': (42.940,98.401,113.013)
C5': (43.998,96.252,113.003)
P: (43.837,94.856,115.229)
O2: (41.919,101.737,114.312)
C4': (44.079,97.669,112.492)
C2': (44.844,99.209,114.132)
O2': (45.543,100.412,114.368)
N1: (42.492,99.626,114.942)
N3: (40.911,100.914,116.150)
N4: (39.924,100.057,118.025)
C6: (42.358,98.600,115.836)
C5: (41.522,98.695,116.875)
O3': (45.671,99.356,111.833)
OP1: (44.888,93.900,114.788)
OP2: (43.679,95.157,116.677)
C4: (40.780,99.904,117.012)
O5': (44.010,96.231,114.443)
C3': (45.319,98.462,112.889)
C1': (43.387,99.498,113.780)
O4': (42.940,98.401,113.013)
C5': (43.998,96.252,113.003)
P: (43.837,94.856,115.229)
O2: (41.919,101.737,114.312)
C4': (44.079,97.669,112.492)
C2': (44.844,99.209,114.132)
O2': (45.543,100.412,114.368)
N1: (42.492,99.626,114.942)
N3: (40.911,100.914,116.150)
N4: (39.924,100.057,118.025)
C6: (42.358,98.600,115.836)
C5: (41.522,98.695,116.875)
O3': (45.671,99.356,111.833)
Image (generated by PyMOL):