Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:B5:A39
Extra
PDB:
ATOM 1 O3' C A 4 -29.727 -41.157 20.539 1.00 64.48 O
ATOM 2 P U A 5 -28.443 -41.426 21.449 1.00 63.22 P
ATOM 3 OP1 U A 5 -28.754 -42.553 22.350 1.00 63.43 O
ATOM 4 OP2 U A 5 -27.980 -40.136 22.007 1.00 63.06 O
ATOM 5 O5' U A 5 -27.349 -41.907 20.393 1.00 63.49 O
ATOM 6 C5' U A 5 -27.489 -43.159 19.728 1.00 63.32 C
ATOM 7 C4' U A 5 -26.394 -43.328 18.695 1.00 62.76 C
ATOM 8 O4' U A 5 -26.493 -42.278 17.699 1.00 63.27 O
ATOM 9 C3' U A 5 -24.980 -43.191 19.233 1.00 61.87 C
ATOM 10 O3' U A 5 -24.539 -44.377 19.866 1.00 61.47 O
ATOM 11 C2' U A 5 -24.205 -42.859 17.960 1.00 62.06 C
ATOM 12 O2' U A 5 -23.897 -43.970 17.148 1.00 61.61 O
ATOM 13 C1' U A 5 -25.192 -41.942 17.237 1.00 62.93 C
ATOM 14 N1 U A 5 -24.870 -40.497 17.492 1.00 63.09 N
ATOM 15 C2 U A 5 -23.831 -39.922 16.789 1.00 62.82 C
ATOM 16 O2 U A 5 -23.176 -40.527 15.965 1.00 63.25 O
ATOM 17 N3 U A 5 -23.580 -38.605 17.077 1.00 62.80 N
ATOM 18 C4 U A 5 -24.252 -37.816 17.990 1.00 63.33 C
ATOM 19 O4 U A 5 -23.917 -36.647 18.144 1.00 63.85 O
ATOM 20 C5 U A 5 -25.320 -38.483 18.693 1.00 63.71 C
ATOM 21 C6 U A 5 -25.584 -39.768 18.427 1.00 63.39 C
ATOM 22 P G A 6 -23.484 -44.270 21.068 1.00 61.96 P
ATOM 23 OP1 G A 6 -23.584 -45.505 21.877 1.00 62.49 O
ATOM 24 OP2 G A 6 -23.638 -42.952 21.724 1.00 61.82 O
ATOM 25 O5' G A 6 -22.072 -44.269 20.315 1.00 61.47 O
TER
ATOM 1 O3' C B 38 -21.135 -52.178 14.405 1.00 73.59 O
ATOM 2 P A B 39 -22.732 -52.247 14.532 1.00 74.13 P
ATOM 3 OP1 A B 39 -23.091 -53.615 14.964 1.00 75.70 O
ATOM 4 OP2 A B 39 -23.339 -51.677 13.304 1.00 74.35 O
ATOM 5 O5' A B 39 -23.039 -51.257 15.746 1.00 71.77 O
ATOM 6 C5' A B 39 -22.394 -50.007 15.740 1.00 69.57 C
ATOM 7 C4' A B 39 -23.094 -48.951 16.565 1.00 67.62 C
ATOM 8 O4' A B 39 -22.232 -47.793 16.469 1.00 66.58 O
ATOM 9 C3' A B 39 -24.462 -48.487 16.073 1.00 67.41 C
ATOM 10 O3' A B 39 -25.516 -49.078 16.832 1.00 67.44 O
ATOM 11 C2' A B 39 -24.405 -46.983 16.315 1.00 66.15 C
ATOM 12 O2' A B 39 -24.680 -46.636 17.660 1.00 65.60 O
ATOM 13 C1' A B 39 -22.950 -46.672 16.008 1.00 65.45 C
ATOM 14 N9 A B 39 -22.665 -46.396 14.597 1.00 65.19 N
ATOM 15 C8 A B 39 -22.437 -47.287 13.586 1.00 66.11 C
ATOM 16 N7 A B 39 -22.209 -46.731 12.419 1.00 66.32 N
ATOM 17 C5 A B 39 -22.293 -45.376 12.679 1.00 65.20 C
ATOM 18 C6 A B 39 -22.148 -44.234 11.860 1.00 65.31 C
ATOM 19 N6 A B 39 -21.880 -44.293 10.549 1.00 66.36 N
ATOM 20 N1 A B 39 -22.293 -43.021 12.437 1.00 64.33 N
ATOM 21 C2 A B 39 -22.564 -42.957 13.747 1.00 63.52 C
ATOM 22 N3 A B 39 -22.723 -43.958 14.614 1.00 63.57 N
ATOM 23 C4 A B 39 -22.574 -45.152 14.015 1.00 64.45 C
ATOM 24 P A B 40 -26.954 -49.373 16.183 1.00 67.83 P
ATOM 25 OP1 A B 40 -27.763 -50.035 17.232 1.00 67.47 O
ATOM 26 OP2 A B 40 -26.758 -50.033 14.871 1.00 68.50 O
ATOM 27 O5' A B 40 -27.552 -47.919 15.890 1.00 66.95 O
TER
ATOM 2 P U A 5 -28.443 -41.426 21.449 1.00 63.22 P
ATOM 3 OP1 U A 5 -28.754 -42.553 22.350 1.00 63.43 O
ATOM 4 OP2 U A 5 -27.980 -40.136 22.007 1.00 63.06 O
ATOM 5 O5' U A 5 -27.349 -41.907 20.393 1.00 63.49 O
ATOM 6 C5' U A 5 -27.489 -43.159 19.728 1.00 63.32 C
ATOM 7 C4' U A 5 -26.394 -43.328 18.695 1.00 62.76 C
ATOM 8 O4' U A 5 -26.493 -42.278 17.699 1.00 63.27 O
ATOM 9 C3' U A 5 -24.980 -43.191 19.233 1.00 61.87 C
ATOM 10 O3' U A 5 -24.539 -44.377 19.866 1.00 61.47 O
ATOM 11 C2' U A 5 -24.205 -42.859 17.960 1.00 62.06 C
ATOM 12 O2' U A 5 -23.897 -43.970 17.148 1.00 61.61 O
ATOM 13 C1' U A 5 -25.192 -41.942 17.237 1.00 62.93 C
ATOM 14 N1 U A 5 -24.870 -40.497 17.492 1.00 63.09 N
ATOM 15 C2 U A 5 -23.831 -39.922 16.789 1.00 62.82 C
ATOM 16 O2 U A 5 -23.176 -40.527 15.965 1.00 63.25 O
ATOM 17 N3 U A 5 -23.580 -38.605 17.077 1.00 62.80 N
ATOM 18 C4 U A 5 -24.252 -37.816 17.990 1.00 63.33 C
ATOM 19 O4 U A 5 -23.917 -36.647 18.144 1.00 63.85 O
ATOM 20 C5 U A 5 -25.320 -38.483 18.693 1.00 63.71 C
ATOM 21 C6 U A 5 -25.584 -39.768 18.427 1.00 63.39 C
ATOM 22 P G A 6 -23.484 -44.270 21.068 1.00 61.96 P
ATOM 23 OP1 G A 6 -23.584 -45.505 21.877 1.00 62.49 O
ATOM 24 OP2 G A 6 -23.638 -42.952 21.724 1.00 61.82 O
ATOM 25 O5' G A 6 -22.072 -44.269 20.315 1.00 61.47 O
TER
ATOM 1 O3' C B 38 -21.135 -52.178 14.405 1.00 73.59 O
ATOM 2 P A B 39 -22.732 -52.247 14.532 1.00 74.13 P
ATOM 3 OP1 A B 39 -23.091 -53.615 14.964 1.00 75.70 O
ATOM 4 OP2 A B 39 -23.339 -51.677 13.304 1.00 74.35 O
ATOM 5 O5' A B 39 -23.039 -51.257 15.746 1.00 71.77 O
ATOM 6 C5' A B 39 -22.394 -50.007 15.740 1.00 69.57 C
ATOM 7 C4' A B 39 -23.094 -48.951 16.565 1.00 67.62 C
ATOM 8 O4' A B 39 -22.232 -47.793 16.469 1.00 66.58 O
ATOM 9 C3' A B 39 -24.462 -48.487 16.073 1.00 67.41 C
ATOM 10 O3' A B 39 -25.516 -49.078 16.832 1.00 67.44 O
ATOM 11 C2' A B 39 -24.405 -46.983 16.315 1.00 66.15 C
ATOM 12 O2' A B 39 -24.680 -46.636 17.660 1.00 65.60 O
ATOM 13 C1' A B 39 -22.950 -46.672 16.008 1.00 65.45 C
ATOM 14 N9 A B 39 -22.665 -46.396 14.597 1.00 65.19 N
ATOM 15 C8 A B 39 -22.437 -47.287 13.586 1.00 66.11 C
ATOM 16 N7 A B 39 -22.209 -46.731 12.419 1.00 66.32 N
ATOM 17 C5 A B 39 -22.293 -45.376 12.679 1.00 65.20 C
ATOM 18 C6 A B 39 -22.148 -44.234 11.860 1.00 65.31 C
ATOM 19 N6 A B 39 -21.880 -44.293 10.549 1.00 66.36 N
ATOM 20 N1 A B 39 -22.293 -43.021 12.437 1.00 64.33 N
ATOM 21 C2 A B 39 -22.564 -42.957 13.747 1.00 63.52 C
ATOM 22 N3 A B 39 -22.723 -43.958 14.614 1.00 63.57 N
ATOM 23 C4 A B 39 -22.574 -45.152 14.015 1.00 64.45 C
ATOM 24 P A B 40 -26.954 -49.373 16.183 1.00 67.83 P
ATOM 25 OP1 A B 40 -27.763 -50.035 17.232 1.00 67.47 O
ATOM 26 OP2 A B 40 -26.758 -50.033 14.871 1.00 68.50 O
ATOM 27 O5' A B 40 -27.552 -47.919 15.890 1.00 66.95 O
TER
Atoms:
C4: (-24.252,-37.816,17.990)
N3: (-23.580,-38.605,17.077)
OP1: (-28.754,-42.553,22.350)
OP2: (-27.980,-40.136,22.007)
C2: (-23.831,-39.922,16.789)
C1': (-25.192,-41.942,17.237)
C3': (-24.980,-43.191,19.233)
O5': (-27.349,-41.907,20.393)
O4': (-26.493,-42.278,17.699)
C5': (-27.489,-43.159,19.728)
P: (-28.443,-41.426,21.449)
C4': (-26.394,-43.328,18.695)
C2': (-24.205,-42.859,17.960)
O2': (-23.897,-43.970,17.148)
N1: (-24.870,-40.497,17.492)
O4: (-23.917,-36.647,18.144)
O2: (-23.176,-40.527,15.965)
C6: (-25.584,-39.768,18.427)
C5: (-25.320,-38.483,18.693)
O3': (-24.539,-44.377,19.866)
N3: (-23.580,-38.605,17.077)
OP1: (-28.754,-42.553,22.350)
OP2: (-27.980,-40.136,22.007)
C2: (-23.831,-39.922,16.789)
C1': (-25.192,-41.942,17.237)
C3': (-24.980,-43.191,19.233)
O5': (-27.349,-41.907,20.393)
O4': (-26.493,-42.278,17.699)
C5': (-27.489,-43.159,19.728)
P: (-28.443,-41.426,21.449)
C4': (-26.394,-43.328,18.695)
C2': (-24.205,-42.859,17.960)
O2': (-23.897,-43.970,17.148)
N1: (-24.870,-40.497,17.492)
O4: (-23.917,-36.647,18.144)
O2: (-23.176,-40.527,15.965)
C6: (-25.584,-39.768,18.427)
C5: (-25.320,-38.483,18.693)
O3': (-24.539,-44.377,19.866)
OP1: (-23.091,-53.615,14.964)
OP2: (-23.339,-51.677,13.304)
C3': (-24.462,-48.487,16.073)
C1': (-22.950,-46.672,16.008)
C5': (-22.394,-50.007,15.740)
O4': (-22.232,-47.793,16.469)
C8: (-22.437,-47.287,13.586)
O2': (-24.680,-46.636,17.660)
C6: (-22.148,-44.234,11.860)
C5: (-22.293,-45.376,12.679)
C4: (-22.574,-45.152,14.015)
P: (-22.732,-52.247,14.532)
C4': (-23.094,-48.951,16.565)
C2': (-24.405,-46.983,16.315)
C2: (-22.564,-42.957,13.747)
N1: (-22.293,-43.021,12.437)
N3: (-22.723,-43.958,14.614)
N6: (-21.880,-44.293,10.549)
N7: (-22.209,-46.731,12.419)
N9: (-22.665,-46.396,14.597)
O5': (-23.039,-51.257,15.746)
O3': (-25.516,-49.078,16.832)
OP2: (-23.339,-51.677,13.304)
C3': (-24.462,-48.487,16.073)
C1': (-22.950,-46.672,16.008)
C5': (-22.394,-50.007,15.740)
O4': (-22.232,-47.793,16.469)
C8: (-22.437,-47.287,13.586)
O2': (-24.680,-46.636,17.660)
C6: (-22.148,-44.234,11.860)
C5: (-22.293,-45.376,12.679)
C4: (-22.574,-45.152,14.015)
P: (-22.732,-52.247,14.532)
C4': (-23.094,-48.951,16.565)
C2': (-24.405,-46.983,16.315)
C2: (-22.564,-42.957,13.747)
N1: (-22.293,-43.021,12.437)
N3: (-22.723,-43.958,14.614)
N6: (-21.880,-44.293,10.549)
N7: (-22.209,-46.731,12.419)
N9: (-22.665,-46.396,14.597)
O5': (-23.039,-51.257,15.746)
O3': (-25.516,-49.078,16.832)
Image (generated by PyMOL):