ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A1223:A553

Extra

PDB:
ATOM 1 O3' C A1222 7.925 89.101 98.058 1.00 37.50 O
ATOM 2 P U A1223 7.634 89.318 96.508 1.00 36.11 P
ATOM 3 OP1 U A1223 6.774 88.185 96.138 1.00 38.21 O
ATOM 4 OP2 U A1223 8.891 89.534 95.777 1.00 34.43 O
ATOM 5 O5' U A1223 6.760 90.640 96.511 1.00 33.82 O
ATOM 6 C5' U A1223 5.468 90.628 97.110 1.00 34.19 C
ATOM 7 C4' U A1223 4.864 92.009 97.101 1.00 36.28 C
ATOM 8 O4' U A1223 5.630 92.885 97.955 1.00 35.88 O
ATOM 9 C3' U A1223 4.864 92.743 95.772 1.00 37.24 C
ATOM 10 O3' U A1223 3.814 92.314 94.923 1.00 39.73 O
ATOM 11 C2' U A1223 4.688 94.188 96.206 1.00 36.75 C
ATOM 12 O2' U A1223 3.366 94.533 96.542 1.00 36.12 O
ATOM 13 C1' U A1223 5.565 94.207 97.449 1.00 36.82 C
ATOM 14 N1 U A1223 6.912 94.632 97.070 1.00 38.09 N
ATOM 15 C2 U A1223 7.148 95.971 97.103 1.00 37.86 C
ATOM 16 O2 U A1223 6.289 96.774 97.420 1.00 34.01 O
ATOM 17 N3 U A1223 8.411 96.338 96.729 1.00 38.72 N
ATOM 18 C4 U A1223 9.429 95.511 96.300 1.00 38.42 C
ATOM 19 O4 U A1223 10.411 96.015 95.760 1.00 37.89 O
ATOM 20 C5 U A1223 9.106 94.119 96.304 1.00 38.91 C
ATOM 21 C6 U A1223 7.891 93.734 96.681 1.00 38.07 C
ATOM 22 P G A1224 3.912 92.562 93.344 1.00 41.11 P
ATOM 23 OP1 G A1224 2.922 91.605 92.810 1.00 41.99 O
ATOM 24 OP2 G A1224 5.313 92.515 92.853 1.00 39.72 O
ATOM 25 O5' G A1224 3.323 94.020 93.131 1.00 39.31 O
TER

ATOM 1 O3' G B 552 -5.415 94.838 97.081 1.00 56.22 O
ATOM 2 P A B 553 -4.949 93.868 98.270 1.00 53.31 P
ATOM 3 OP1 A B 553 -5.559 92.563 97.975 1.00 52.00 O
ATOM 4 OP2 A B 553 -5.115 94.476 99.610 1.00 53.66 O
ATOM 5 O5' A B 553 -3.406 93.700 97.970 1.00 52.71 O
ATOM 6 C5' A B 553 -2.975 92.910 96.856 1.00 53.47 C
ATOM 7 C4' A B 553 -1.480 92.986 96.729 1.00 53.72 C
ATOM 8 O4' A B 553 -1.086 94.321 96.324 1.00 53.56 O
ATOM 9 C3' A B 553 -0.713 92.754 98.022 1.00 52.49 C
ATOM 10 O3' A B 553 -0.585 91.362 98.277 1.00 52.86 O
ATOM 11 C2' A B 553 0.624 93.396 97.696 1.00 51.98 C
ATOM 12 O2' A B 553 1.410 92.560 96.863 1.00 49.59 O
ATOM 13 C1' A B 553 0.169 94.628 96.907 1.00 52.18 C
ATOM 14 N9 A B 553 0.028 95.852 97.697 1.00 51.48 N
ATOM 15 C8 A B 553 -1.107 96.415 98.212 1.00 51.64 C
ATOM 16 N7 A B 553 -0.901 97.559 98.822 1.00 52.03 N
ATOM 17 C5 A B 553 0.468 97.757 98.709 1.00 52.24 C
ATOM 18 C6 A B 553 1.330 98.809 99.135 1.00 52.52 C
ATOM 19 N6 A B 553 0.913 99.919 99.756 1.00 51.41 N
ATOM 20 N1 A B 553 2.646 98.677 98.883 1.00 51.65 N
ATOM 21 C2 A B 553 3.063 97.582 98.234 1.00 52.29 C
ATOM 22 N3 A B 553 2.358 96.546 97.769 1.00 52.44 N
ATOM 23 C4 A B 553 1.054 96.698 98.041 1.00 52.22 C
ATOM 24 P A B 554 -0.703 90.796 99.778 1.00 53.18 P
ATOM 25 OP1 A B 554 -0.828 89.324 99.559 1.00 51.89 O
ATOM 26 OP2 A B 554 -1.746 91.522 100.547 1.00 52.64 O
ATOM 27 O5' A B 554 0.695 91.129 100.481 1.00 52.51 O
TER

Atoms:
C4: (9.429,95.511,96.300)
N3: (8.411,96.338,96.729)
OP1: (6.774,88.185,96.138)
OP2: (8.891,89.534,95.777)
C2: (7.148,95.971,97.103)
C1': (5.565,94.207,97.449)
C3': (4.864,92.743,95.772)
O5': (6.760,90.640,96.511)
O4': (5.630,92.885,97.955)
C5': (5.468,90.628,97.110)
P: (7.634,89.318,96.508)
C4': (4.864,92.009,97.101)
C2': (4.688,94.188,96.206)
O2': (3.366,94.533,96.542)
N1: (6.912,94.632,97.070)
O4: (10.411,96.015,95.760)
O2: (6.289,96.774,97.420)
C6: (7.891,93.734,96.681)
C5: (9.106,94.119,96.304)
O3': (3.814,92.314,94.923)
OP1: (-5.559,92.563,97.975)
OP2: (-5.115,94.476,99.610)
C3': (-0.713,92.754,98.022)
C1': (0.169,94.628,96.907)
C5': (-2.975,92.910,96.856)
O4': (-1.086,94.321,96.324)
C8: (-1.107,96.415,98.212)
O2': (1.410,92.560,96.863)
C6: (1.330,98.809,99.135)
C5: (0.468,97.757,98.709)
C4: (1.054,96.698,98.041)
P: (-4.949,93.868,98.270)
C4': (-1.480,92.986,96.729)
C2': (0.624,93.396,97.696)
C2: (3.063,97.582,98.234)
N1: (2.646,98.677,98.883)
N3: (2.358,96.546,97.769)
N6: (0.913,99.919,99.756)
N7: (-0.901,97.559,98.822)
N9: (0.028,95.852,97.697)
O5': (-3.406,93.700,97.970)
O3': (-0.585,91.362,98.277)
Image (generated by PyMOL):
PyMOL image
show in jmol